EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000004260 (Gene tree)
Gene ID: 103028919
Gene Symbol: hbs1l
Alias: wu:fc23c07|zgc:55400
Full Name: HBS1 like translational GTPase
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 59484 bases
Position: chr15:3864832-3924315
Accession: 103028919
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000004385	GTP_EFTU	PF00009.27	8.5e-47	1	1
ENSAMXP00000038277	GTP_EFTU	PF00009.27	8.9e-47	1	1
ENSAMXP00000048281	GTP_EFTU	PF00009.27	7.4e-45	1	1
ENSAMXP00000048281	MMR_HSR1	PF01926.23	9.4e-07	1	1
ENSAMXP00000048281	GTP_EFTU_D2	PF03144.25	9e-11	1	1
ENSAMXP00000004385	GTP_EFTU_D2	PF03144.25	1.5e-09	1	1
ENSAMXP00000038277	GTP_EFTU_D2	PF03144.25	1.6e-09	1	1
ENSAMXP00000004385	GTP_EFTU_D3	PF03143.17	3.3e-28	1	1
ENSAMXP00000038277	GTP_EFTU_D3	PF03143.17	4.5e-28	1	1
ENSAMXP00000048281	GTP_EFTU_D3	PF03143.17	1.9e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000033523	-	3945	-	ENSAMXP00000038277	690 (aa)	-	-
ENSAMXT00000042622	-	1746	-	ENSAMXP00000048281	581 (aa)	-	-
ENSAMXT00000004385	-	2366	XM_007257841	ENSAMXP00000004385	674 (aa)	XP_007257903	W5K9X4

Gene Model

Click here to download ENSAMXG00000004260's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000004260's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000004260	hbs1l	72	40.509	ENSAMXG00000004487	EEF1A1	96	40.431
ENSAMXG00000004260	hbs1l	73	39.726	ENSAMXG00000002728	si:dkey-37o8.1	95	40.092
ENSAMXG00000004260	hbs1l	72	40.662	ENSAMXG00000008638	gspt1	77	39.486
ENSAMXG00000004260	hbs1l	73	41.514	ENSAMXG00000029743	-	95	41.553
ENSAMXG00000004260	hbs1l	72	41.135	ENSAMXG00000002781	gspt1l	63	41.135
ENSAMXG00000004260	hbs1l	72	40.741	ENSAMXG00000020651	eef1a1b	94	40.783
ENSAMXG00000004260	hbs1l	72	40.046	ENSAMXG00000002854	eef1a2	94	40.092

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000004260	hbs1l	97	77.321	ENSG00000112339	HBS1L	95	86.957	Homo_sapiens
ENSAMXG00000004260	hbs1l	81	90.349	ENSAPOG00000013169	hbs1l	91	90.349	Acanthochromis_polyacanthus
ENSAMXG00000004260	hbs1l	97	79.035	ENSAMEG00000009749	HBS1L	99	73.160	Ailuropoda_melanoleuca
ENSAMXG00000004260	hbs1l	90	85.579	ENSACIG00000017087	hbs1l	91	86.015	Amphilophus_citrinellus
ENSAMXG00000004260	hbs1l	97	84.270	ENSAPEG00000008320	hbs1l	100	79.226	Amphiprion_percula
ENSAMXG00000004260	hbs1l	97	85.821	ENSATEG00000004459	hbs1l	100	79.437	Anabas_testudineus
ENSAMXG00000004260	hbs1l	94	78.253	ENSAPLG00000007791	HBS1L	100	72.182	Anas_platyrhynchos
ENSAMXG00000004260	hbs1l	97	77.634	ENSACAG00000010120	HBS1L	100	71.902	Anolis_carolinensis
ENSAMXG00000004260	hbs1l	97	79.259	ENSANAG00000038076	HBS1L	99	79.259	Aotus_nancymaae
ENSAMXG00000004260	hbs1l	99	84.615	ENSACLG00000010469	hbs1l	100	79.712	Astatotilapia_calliptera
ENSAMXG00000004260	hbs1l	96	80.000	ENSBTAG00000020174	HBS1L	100	72.806	Bos_taurus
ENSAMXG00000004260	hbs1l	80	48.354	WBGene00010622	K07A12.4	99	43.261	Caenorhabditis_elegans
ENSAMXG00000004260	hbs1l	99	78.182	ENSCJAG00000007678	HBS1L	99	79.190	Callithrix_jacchus
ENSAMXG00000004260	hbs1l	97	78.108	ENSCAFG00000000226	HBS1L	100	72.622	Canis_familiaris
ENSAMXG00000004260	hbs1l	97	78.108	ENSCAFG00020021904	HBS1L	100	72.622	Canis_lupus_dingo
ENSAMXG00000004260	hbs1l	96	79.619	ENSCHIG00000010299	HBS1L	100	72.518	Capra_hircus
ENSAMXG00000004260	hbs1l	97	78.889	ENSTSYG00000007089	HBS1L	99	74.554	Carlito_syrichta
ENSAMXG00000004260	hbs1l	96	71.120	ENSCPOG00000007015	HBS1L	99	64.793	Cavia_porcellus
ENSAMXG00000004260	hbs1l	99	77.091	ENSCCAG00000033863	HBS1L	99	78.269	Cebus_capucinus
ENSAMXG00000004260	hbs1l	97	79.592	ENSCATG00000043042	HBS1L	100	73.487	Cercocebus_atys
ENSAMXG00000004260	hbs1l	96	78.667	ENSCLAG00000004937	HBS1L	100	71.470	Chinchilla_lanigera
ENSAMXG00000004260	hbs1l	97	79.630	ENSCSAG00000016791	HBS1L	100	73.381	Chlorocebus_sabaeus
ENSAMXG00000004260	hbs1l	95	62.295	ENSCHOG00000001852	HBS1L	99	57.840	Choloepus_hoffmanni
ENSAMXG00000004260	hbs1l	97	79.035	ENSCPBG00000017635	HBS1L	100	73.055	Chrysemys_picta_bellii
ENSAMXG00000004260	hbs1l	99	48.808	ENSCING00000005592	-	99	47.434	Ciona_intestinalis
ENSAMXG00000004260	hbs1l	94	59.623	ENSCSAVG00000002297	-	99	59.259	Ciona_savignyi
ENSAMXG00000004260	hbs1l	97	79.221	ENSCANG00000031208	HBS1L	97	79.035	Colobus_angolensis_palliatus
ENSAMXG00000004260	hbs1l	96	80.189	ENSCGRG00001024531	Hbs1l	100	72.701	Cricetulus_griseus_chok1gshd
ENSAMXG00000004260	hbs1l	96	80.189	ENSCGRG00000017361	Hbs1l	100	72.701	Cricetulus_griseus_crigri
ENSAMXG00000004260	hbs1l	97	85.553	ENSCSEG00000002794	hbs1l	94	80.000	Cynoglossus_semilaevis
ENSAMXG00000004260	hbs1l	97	83.333	ENSCVAG00000001462	hbs1l	100	76.869	Cyprinodon_variegatus
ENSAMXG00000004260	hbs1l	100	87.135	ENSDARG00000036778	hbs1l	100	86.880	Danio_rerio
ENSAMXG00000004260	hbs1l	97	80.189	ENSDORG00000005958	Hbs1l	100	72.583	Dipodomys_ordii
ENSAMXG00000004260	hbs1l	99	46.901	FBgn0042712	HBS1	100	47.795	Drosophila_melanogaster
ENSAMXG00000004260	hbs1l	97	78.571	ENSETEG00000000913	HBS1L	100	67.194	Echinops_telfairi
ENSAMXG00000004260	hbs1l	96	68.440	ENSEBUG00000010759	hbs1l	100	64.309	Eptatretus_burgeri
ENSAMXG00000004260	hbs1l	97	77.215	ENSEASG00005011148	HBS1L	100	72.701	Equus_asinus_asinus
ENSAMXG00000004260	hbs1l	97	77.034	ENSECAG00000004470	HBS1L	100	72.557	Equus_caballus
ENSAMXG00000004260	hbs1l	100	67.672	ENSEEUG00000013582	HBS1L	100	67.001	Erinaceus_europaeus
ENSAMXG00000004260	hbs1l	88	72.549	ENSELUG00000006444	hbs1l	96	77.019	Esox_lucius
ENSAMXG00000004260	hbs1l	97	78.479	ENSFCAG00000001810	HBS1L	100	80.230	Felis_catus
ENSAMXG00000004260	hbs1l	89	77.695	ENSFALG00000011898	HBS1L	100	73.256	Ficedula_albicollis
ENSAMXG00000004260	hbs1l	96	79.198	ENSFDAG00000011841	HBS1L	100	71.470	Fukomys_damarensis
ENSAMXG00000004260	hbs1l	97	83.396	ENSFHEG00000006942	hbs1l	100	76.869	Fundulus_heteroclitus
ENSAMXG00000004260	hbs1l	96	82.739	ENSGMOG00000011843	hbs1l	100	77.939	Gadus_morhua
ENSAMXG00000004260	hbs1l	97	78.810	ENSGALG00000013962	HBS1L	100	73.487	Gallus_gallus
ENSAMXG00000004260	hbs1l	97	84.701	ENSGAFG00000004157	hbs1l	100	78.420	Gambusia_affinis
ENSAMXG00000004260	hbs1l	97	82.657	ENSGACG00000011035	hbs1l	100	78.613	Gasterosteus_aculeatus
ENSAMXG00000004260	hbs1l	97	78.850	ENSGAGG00000002033	HBS1L	100	72.662	Gopherus_agassizii
ENSAMXG00000004260	hbs1l	97	71.184	ENSGGOG00000034956	-	95	84.211	Gorilla_gorilla
ENSAMXG00000004260	hbs1l	99	84.803	ENSHBUG00000013424	hbs1l	100	79.856	Haplochromis_burtoni
ENSAMXG00000004260	hbs1l	97	74.956	ENSHGLG00000000516	HBS1L	100	71.284	Heterocephalus_glaber_female
ENSAMXG00000004260	hbs1l	97	74.956	ENSHGLG00100003550	HBS1L	100	71.284	Heterocephalus_glaber_male
ENSAMXG00000004260	hbs1l	97	83.333	ENSHCOG00000007581	hbs1l	93	76.062	Hippocampus_comes
ENSAMXG00000004260	hbs1l	100	89.971	ENSIPUG00000010748	hbs1l	100	89.971	Ictalurus_punctatus
ENSAMXG00000004260	hbs1l	97	79.174	ENSSTOG00000007551	HBS1L	100	72.557	Ictidomys_tridecemlineatus
ENSAMXG00000004260	hbs1l	95	69.048	ENSJJAG00000012660	-	100	57.143	Jaculus_jaculus
ENSAMXG00000004260	hbs1l	97	88.889	ENSJJAG00000017024	-	85	88.889	Jaculus_jaculus
ENSAMXG00000004260	hbs1l	97	85.094	ENSKMAG00000012130	hbs1l	100	82.873	Kryptolebias_marmoratus
ENSAMXG00000004260	hbs1l	99	84.230	ENSLBEG00000002784	hbs1l	100	78.490	Labrus_bergylta
ENSAMXG00000004260	hbs1l	82	79.150	ENSLACG00000004528	HBS1L	100	79.150	Latimeria_chalumnae
ENSAMXG00000004260	hbs1l	97	85.714	ENSLOCG00000016221	hbs1l	100	75.352	Lepisosteus_oculatus
ENSAMXG00000004260	hbs1l	97	78.571	ENSLAFG00000007835	HBS1L	100	70.402	Loxodonta_africana
ENSAMXG00000004260	hbs1l	97	79.406	ENSMFAG00000003766	HBS1L	99	75.041	Macaca_fascicularis
ENSAMXG00000004260	hbs1l	97	75.041	ENSMMUG00000004802	HBS1L	99	78.571	Macaca_mulatta
ENSAMXG00000004260	hbs1l	97	79.406	ENSMNEG00000043942	HBS1L	99	75.041	Macaca_nemestrina
ENSAMXG00000004260	hbs1l	97	79.406	ENSMLEG00000043218	HBS1L	97	75.041	Mandrillus_leucophaeus
ENSAMXG00000004260	hbs1l	98	83.241	ENSMAMG00000016498	hbs1l	99	83.549	Mastacembelus_armatus
ENSAMXG00000004260	hbs1l	89	85.797	ENSMZEG00005024018	-	90	86.042	Maylandia_zebra
ENSAMXG00000004260	hbs1l	97	85.988	ENSMZEG00005015575	hbs1l	100	79.712	Maylandia_zebra
ENSAMXG00000004260	hbs1l	96	78.625	ENSMGAG00000013065	HBS1L	99	72.052	Meleagris_gallopavo
ENSAMXG00000004260	hbs1l	96	80.114	ENSMAUG00000001077	Hbs1l	100	72.478	Mesocricetus_auratus
ENSAMXG00000004260	hbs1l	100	61.119	ENSMICG00000030043	-	96	82.796	Microcebus_murinus
ENSAMXG00000004260	hbs1l	97	70.315	ENSMICG00000001533	-	99	70.315	Microcebus_murinus
ENSAMXG00000004260	hbs1l	96	80.000	ENSMOCG00000023038	Hbs1l	100	72.414	Microtus_ochrogaster
ENSAMXG00000004260	hbs1l	97	79.573	ENSMMOG00000015507	hbs1l	99	80.488	Mola_mola
ENSAMXG00000004260	hbs1l	97	76.283	ENSMODG00000017499	HBS1L	100	72.583	Monodelphis_domestica
ENSAMXG00000004260	hbs1l	97	84.515	ENSMALG00000010768	hbs1l	99	79.870	Monopterus_albus
ENSAMXG00000004260	hbs1l	96	78.868	MGP_CAROLIEiJ_G0015162	Hbs1l	100	71.162	Mus_caroli
ENSAMXG00000004260	hbs1l	96	79.699	ENSMUSG00000019977	Hbs1l	100	90.323	Mus_musculus
ENSAMXG00000004260	hbs1l	96	79.135	MGP_PahariEiJ_G0023782	Hbs1l	100	71.674	Mus_pahari
ENSAMXG00000004260	hbs1l	96	79.699	MGP_SPRETEiJ_G0015970	Hbs1l	100	72.103	Mus_spretus
ENSAMXG00000004260	hbs1l	97	77.231	ENSMPUG00000014810	HBS1L	100	72.478	Mustela_putorius_furo
ENSAMXG00000004260	hbs1l	97	76.951	ENSMLUG00000010618	HBS1L	100	72.270	Myotis_lucifugus
ENSAMXG00000004260	hbs1l	95	79.017	ENSNGAG00000015184	Hbs1l	100	71.367	Nannospalax_galili
ENSAMXG00000004260	hbs1l	97	86.180	ENSNBRG00000020095	hbs1l	100	85.795	Neolamprologus_brichardi
ENSAMXG00000004260	hbs1l	97	78.850	ENSNLEG00000014721	HBS1L	99	74.595	Nomascus_leucogenys
ENSAMXG00000004260	hbs1l	81	84.772	ENSMEUG00000003907	HBS1L	81	84.772	Notamacropus_eugenii
ENSAMXG00000004260	hbs1l	81	82.203	ENSOPRG00000013595	HBS1L	75	82.645	Ochotona_princeps
ENSAMXG00000004260	hbs1l	97	78.868	ENSODEG00000008959	HBS1L	100	71.239	Octodon_degus
ENSAMXG00000004260	hbs1l	97	85.413	ENSONIG00000000460	hbs1l	100	78.963	Oreochromis_niloticus
ENSAMXG00000004260	hbs1l	97	80.000	ENSOANG00000002684	-	99	73.235	Ornithorhynchus_anatinus
ENSAMXG00000004260	hbs1l	97	75.472	ENSOCUG00000011619	HBS1L	99	70.820	Oryctolagus_cuniculus
ENSAMXG00000004260	hbs1l	97	82.090	ENSORLG00000016559	hbs1l	100	75.710	Oryzias_latipes
ENSAMXG00000004260	hbs1l	97	81.903	ENSORLG00020003827	hbs1l	100	75.248	Oryzias_latipes_hni
ENSAMXG00000004260	hbs1l	97	81.903	ENSORLG00015023105	hbs1l	100	75.248	Oryzias_latipes_hsok
ENSAMXG00000004260	hbs1l	97	83.178	ENSOMEG00000016715	hbs1l	100	76.629	Oryzias_melastigma
ENSAMXG00000004260	hbs1l	97	79.473	ENSOGAG00000012604	HBS1L	100	72.478	Otolemur_garnettii
ENSAMXG00000004260	hbs1l	96	79.810	ENSOARG00000014798	-	99	72.727	Ovis_aries
ENSAMXG00000004260	hbs1l	96	79.619	ENSOARG00000005671	-	100	72.374	Ovis_aries
ENSAMXG00000004260	hbs1l	97	77.500	ENSPPAG00000029900	HBS1L	97	79.221	Pan_paniscus
ENSAMXG00000004260	hbs1l	97	78.519	ENSPPRG00000005285	HBS1L	99	74.110	Panthera_pardus
ENSAMXG00000004260	hbs1l	97	78.519	ENSPTIG00000015803	HBS1L	99	74.110	Panthera_tigris_altaica
ENSAMXG00000004260	hbs1l	97	77.500	ENSPTRG00000018630	HBS1L	97	79.221	Pan_troglodytes
ENSAMXG00000004260	hbs1l	97	79.592	ENSPANG00000007075	HBS1L	100	73.487	Papio_anubis
ENSAMXG00000004260	hbs1l	100	78.696	ENSPKIG00000023171	hbs1l	98	82.476	Paramormyrops_kingsleyae
ENSAMXG00000004260	hbs1l	81	76.573	ENSPSIG00000016467	HBS1L	97	70.167	Pelodiscus_sinensis
ENSAMXG00000004260	hbs1l	95	91.667	ENSPMGG00000018051	hbs1l	97	87.302	Periophthalmus_magnuspinnatus
ENSAMXG00000004260	hbs1l	96	80.566	ENSPEMG00000014369	Hbs1l	100	72.557	Peromyscus_maniculatus_bairdii
ENSAMXG00000004260	hbs1l	95	71.429	ENSPMAG00000002516	hbs1l	100	63.977	Petromyzon_marinus
ENSAMXG00000004260	hbs1l	97	84.142	ENSPFOG00000021764	hbs1l	100	78.187	Poecilia_formosa
ENSAMXG00000004260	hbs1l	97	84.328	ENSPLAG00000006193	hbs1l	100	78.551	Poecilia_latipinna
ENSAMXG00000004260	hbs1l	99	83.333	ENSPMEG00000000925	hbs1l	100	78.409	Poecilia_mexicana
ENSAMXG00000004260	hbs1l	97	83.769	ENSPREG00000011270	hbs1l	100	77.574	Poecilia_reticulata
ENSAMXG00000004260	hbs1l	97	79.035	ENSPPYG00000017027	HBS1L	100	72.190	Pongo_abelii
ENSAMXG00000004260	hbs1l	89	78.004	ENSPCAG00000007002	HBS1L	79	78.004	Procavia_capensis
ENSAMXG00000004260	hbs1l	87	77.290	ENSPVAG00000015229	HBS1L	85	77.419	Pteropus_vampyrus
ENSAMXG00000004260	hbs1l	97	85.797	ENSPNYG00000013360	hbs1l	100	79.568	Pundamilia_nyererei
ENSAMXG00000004260	hbs1l	100	92.962	ENSPNAG00000026721	hbs1l	100	92.962	Pygocentrus_nattereri
ENSAMXG00000004260	hbs1l	96	79.057	ENSRNOG00000014531	Hbs1l	100	71.593	Rattus_norvegicus
ENSAMXG00000004260	hbs1l	97	79.592	ENSRBIG00000004484	HBS1L	100	73.343	Rhinopithecus_bieti
ENSAMXG00000004260	hbs1l	97	79.592	ENSRROG00000026176	HBS1L	100	73.199	Rhinopithecus_roxellana
ENSAMXG00000004260	hbs1l	73	38.202	YKR084C	-	73	38.341	Saccharomyces_cerevisiae
ENSAMXG00000004260	hbs1l	97	70.000	ENSSBOG00000016930	-	98	79.787	Saimiri_boliviensis_boliviensis
ENSAMXG00000004260	hbs1l	97	79.074	ENSSBOG00000019696	-	96	79.630	Saimiri_boliviensis_boliviensis
ENSAMXG00000004260	hbs1l	97	78.571	ENSSHAG00000013509	HBS1L	100	72.818	Sarcophilus_harrisii
ENSAMXG00000004260	hbs1l	97	83.269	ENSSFOG00015017544	hbs1l	96	79.643	Scleropages_formosus
ENSAMXG00000004260	hbs1l	97	85.249	ENSSMAG00000010621	hbs1l	100	78.161	Scophthalmus_maximus
ENSAMXG00000004260	hbs1l	97	86.007	ENSSDUG00000012974	hbs1l	100	80.282	Seriola_dumerili
ENSAMXG00000004260	hbs1l	97	85.634	ENSSLDG00000004960	hbs1l	100	79.577	Seriola_lalandi_dorsalis
ENSAMXG00000004260	hbs1l	94	79.735	ENSSARG00000006747	HBS1L	100	71.344	Sorex_araneus
ENSAMXG00000004260	hbs1l	97	76.994	ENSSPUG00000012389	HBS1L	99	71.387	Sphenodon_punctatus
ENSAMXG00000004260	hbs1l	94	81.312	ENSSSCG00000004169	HBS1L	98	74.809	Sus_scrofa
ENSAMXG00000004260	hbs1l	97	78.625	ENSTGUG00000011507	HBS1L	99	72.832	Taeniopygia_guttata
ENSAMXG00000004260	hbs1l	97	85.714	ENSTRUG00000016128	hbs1l	89	94.595	Takifugu_rubripes
ENSAMXG00000004260	hbs1l	95	85.714	ENSTNIG00000016320	hbs1l	99	78.003	Tetraodon_nigroviridis
ENSAMXG00000004260	hbs1l	94	88.889	ENSTBEG00000009950	HBS1L	83	88.889	Tupaia_belangeri
ENSAMXG00000004260	hbs1l	97	77.455	ENSTTRG00000003715	HBS1L	99	72.334	Tursiops_truncatus
ENSAMXG00000004260	hbs1l	97	77.960	ENSUAMG00000001064	HBS1L	100	73.343	Ursus_americanus
ENSAMXG00000004260	hbs1l	97	78.559	ENSUMAG00000024395	HBS1L	100	78.860	Ursus_maritimus
ENSAMXG00000004260	hbs1l	97	78.479	ENSVPAG00000006280	HBS1L	87	82.143	Vicugna_pacos
ENSAMXG00000004260	hbs1l	97	78.293	ENSVVUG00000000295	HBS1L	100	72.478	Vulpes_vulpes
ENSAMXG00000004260	hbs1l	97	79.065	ENSXETG00000003726	hbs1l	100	73.043	Xenopus_tropicalis
ENSAMXG00000004260	hbs1l	97	84.730	ENSXCOG00000005323	hbs1l	100	79.565	Xiphophorus_couchianus
ENSAMXG00000004260	hbs1l	97	84.888	ENSXMAG00000004359	hbs1l	100	78.561	Xiphophorus_maculatus