EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000004294 (Gene tree)
Gene ID: 103026349
Gene Symbol: SRBD1
Alias: FLJ10379
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 172000 bases
Position: chr25:28045794-28217793
Accession: 103026349
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000038427	S1	PF00575.23	7.3e-10	1	1
ENSAMXP00000004409	S1	PF00575.23	7.7e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000004409	SRBD1-201	7167	-	ENSAMXP00000004409	1019 (aa)	-	W5K9Z8
ENSAMXT00000051457	SRBD1-202	7770	XM_022684965	ENSAMXP00000038427	993 (aa)	XP_022540686	UPI000BBDDB13

Gene Model

Click here to download ENSAMXG00000004294's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000004294's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000004294	SRBD1	93	56.184	ENSG00000068784	SRBD1	89	58.509	Homo_sapiens
ENSAMXG00000004294	SRBD1	100	65.889	ENSAPOG00000005103	si:ch211-117n7.8	100	64.873	Acanthochromis_polyacanthus
ENSAMXG00000004294	SRBD1	93	57.505	ENSAMEG00000005993	SRBD1	86	60.069	Ailuropoda_melanoleuca
ENSAMXG00000004294	SRBD1	97	66.333	ENSACIG00000009875	si:ch211-117n7.8	100	65.327	Amphilophus_citrinellus
ENSAMXG00000004294	SRBD1	100	64.551	ENSAOCG00000024718	si:ch211-117n7.8	100	64.062	Amphiprion_ocellaris
ENSAMXG00000004294	SRBD1	94	67.610	ENSAPEG00000002645	si:ch211-117n7.8	94	68.484	Amphiprion_percula
ENSAMXG00000004294	SRBD1	100	63.992	ENSATEG00000010844	si:ch211-117n7.8	100	63.343	Anabas_testudineus
ENSAMXG00000004294	SRBD1	94	58.021	ENSAPLG00000006313	SRBD1	86	61.387	Anas_platyrhynchos
ENSAMXG00000004294	SRBD1	93	55.797	ENSANAG00000025573	SRBD1	86	59.170	Aotus_nancymaae
ENSAMXG00000004294	SRBD1	100	64.120	ENSACLG00000024219	si:ch211-117n7.8	100	62.607	Astatotilapia_calliptera
ENSAMXG00000004294	SRBD1	93	56.095	ENSBTAG00000007508	SRBD1	89	56.726	Bos_taurus
ENSAMXG00000004294	SRBD1	93	56.062	ENSCJAG00000000727	SRBD1	86	59.285	Callithrix_jacchus
ENSAMXG00000004294	SRBD1	93	56.844	ENSCAFG00000002554	SRBD1	88	58.713	Canis_familiaris
ENSAMXG00000004294	SRBD1	93	53.575	ENSCAFG00020026284	SRBD1	99	60.681	Canis_lupus_dingo
ENSAMXG00000004294	SRBD1	93	55.785	ENSCHIG00000016535	SRBD1	89	58.278	Capra_hircus
ENSAMXG00000004294	SRBD1	93	56.790	ENSTSYG00000012797	SRBD1	88	59.393	Carlito_syrichta
ENSAMXG00000004294	SRBD1	93	57.495	ENSCPOG00000004773	SRBD1	86	61.164	Cavia_porcellus
ENSAMXG00000004294	SRBD1	93	56.211	ENSCCAG00000025589	SRBD1	85	60.375	Cebus_capucinus
ENSAMXG00000004294	SRBD1	93	56.269	ENSCATG00000039530	SRBD1	89	58.509	Cercocebus_atys
ENSAMXG00000004294	SRBD1	93	58.316	ENSCLAG00000008623	SRBD1	85	62.143	Chinchilla_lanigera
ENSAMXG00000004294	SRBD1	93	56.166	ENSCSAG00000013350	SRBD1	87	59.565	Chlorocebus_sabaeus
ENSAMXG00000004294	SRBD1	81	70.000	ENSCHOG00000003805	SRBD1	72	70.000	Choloepus_hoffmanni
ENSAMXG00000004294	SRBD1	84	61.385	ENSCPBG00000005677	SRBD1	86	61.385	Chrysemys_picta_bellii
ENSAMXG00000004294	SRBD1	78	39.924	ENSCING00000005950	-	99	39.497	Ciona_intestinalis
ENSAMXG00000004294	SRBD1	79	43.110	ENSCSAVG00000000861	-	99	43.110	Ciona_savignyi
ENSAMXG00000004294	SRBD1	93	56.508	ENSCANG00000016307	SRBD1	87	59.336	Colobus_angolensis_palliatus
ENSAMXG00000004294	SRBD1	93	56.794	ENSCGRG00001000513	Srbd1	86	60.517	Cricetulus_griseus_chok1gshd
ENSAMXG00000004294	SRBD1	93	56.794	ENSCGRG00000002283	Srbd1	86	60.517	Cricetulus_griseus_crigri
ENSAMXG00000004294	SRBD1	99	62.463	ENSCSEG00000000856	si:ch211-117n7.8	99	62.363	Cynoglossus_semilaevis
ENSAMXG00000004294	SRBD1	89	67.320	ENSCVAG00000020212	si:ch211-117n7.8	94	67.654	Cyprinodon_variegatus
ENSAMXG00000004294	SRBD1	92	56.760	ENSDNOG00000018686	SRBD1	85	59.977	Dasypus_novemcinctus
ENSAMXG00000004294	SRBD1	92	56.408	ENSDORG00000010468	Srbd1	90	58.804	Dipodomys_ordii
ENSAMXG00000004294	SRBD1	79	36.020	FBgn0051156	CG31156	79	36.524	Drosophila_melanogaster
ENSAMXG00000004294	SRBD1	84	61.091	ENSETEG00000000739	SRBD1	79	61.091	Echinops_telfairi
ENSAMXG00000004294	SRBD1	72	50.069	ENSEBUG00000008902	si:ch211-117n7.8	96	49.861	Eptatretus_burgeri
ENSAMXG00000004294	SRBD1	93	55.324	ENSEASG00005003132	SRBD1	98	58.647	Equus_asinus_asinus
ENSAMXG00000004294	SRBD1	93	56.889	ENSECAG00000013865	SRBD1	89	58.142	Equus_caballus
ENSAMXG00000004294	SRBD1	100	69.415	ENSELUG00000012592	si:ch211-117n7.8	100	68.780	Esox_lucius
ENSAMXG00000004294	SRBD1	93	56.426	ENSFCAG00000005101	SRBD1	85	60.233	Felis_catus
ENSAMXG00000004294	SRBD1	99	57.057	ENSFALG00000012966	SRBD1	99	56.956	Ficedula_albicollis
ENSAMXG00000004294	SRBD1	93	58.140	ENSFDAG00000016670	SRBD1	95	58.505	Fukomys_damarensis
ENSAMXG00000004294	SRBD1	100	64.626	ENSFHEG00000019480	si:ch211-117n7.8	100	63.875	Fundulus_heteroclitus
ENSAMXG00000004294	SRBD1	50	67.606	ENSGMOG00000018010	-	100	67.606	Gadus_morhua
ENSAMXG00000004294	SRBD1	93	58.038	ENSGALG00000009990	SRBD1	97	57.172	Gallus_gallus
ENSAMXG00000004294	SRBD1	100	63.941	ENSGAFG00000019664	si:ch211-117n7.8	100	62.512	Gambusia_affinis
ENSAMXG00000004294	SRBD1	62	72.397	ENSGACG00000010794	si:ch211-117n7.8	100	72.240	Gasterosteus_aculeatus
ENSAMXG00000004294	SRBD1	83	61.684	ENSGAGG00000006166	SRBD1	99	61.356	Gopherus_agassizii
ENSAMXG00000004294	SRBD1	93	56.050	ENSGGOG00000005910	SRBD1	89	59.516	Gorilla_gorilla
ENSAMXG00000004294	SRBD1	97	57.787	ENSHBUG00000013207	si:ch211-117n7.8	99	56.762	Haplochromis_burtoni
ENSAMXG00000004294	SRBD1	93	57.492	ENSHGLG00000018153	-	92	58.480	Heterocephalus_glaber_female
ENSAMXG00000004294	SRBD1	93	57.705	ENSHGLG00100015183	-	92	58.590	Heterocephalus_glaber_male
ENSAMXG00000004294	SRBD1	99	79.276	ENSIPUG00000009661	srbd1	99	79.577	Ictalurus_punctatus
ENSAMXG00000004294	SRBD1	93	58.501	ENSSTOG00000005898	SRBD1	90	59.867	Ictidomys_tridecemlineatus
ENSAMXG00000004294	SRBD1	93	54.869	ENSJJAG00000022244	Srbd1	86	58.148	Jaculus_jaculus
ENSAMXG00000004294	SRBD1	99	64.532	ENSKMAG00000003473	si:ch211-117n7.8	99	62.874	Kryptolebias_marmoratus
ENSAMXG00000004294	SRBD1	100	65.298	ENSLBEG00000027518	si:ch211-117n7.8	100	64.579	Labrus_bergylta
ENSAMXG00000004294	SRBD1	84	61.196	ENSLACG00000009790	SRBD1	100	60.727	Latimeria_chalumnae
ENSAMXG00000004294	SRBD1	93	67.895	ENSLOCG00000016360	si:ch211-117n7.8	99	64.723	Lepisosteus_oculatus
ENSAMXG00000004294	SRBD1	93	56.166	ENSMFAG00000042026	SRBD1	87	59.565	Macaca_fascicularis
ENSAMXG00000004294	SRBD1	93	56.360	ENSMMUG00000003490	SRBD1	87	59.565	Macaca_mulatta
ENSAMXG00000004294	SRBD1	93	54.715	ENSMNEG00000034701	SRBD1	87	57.961	Macaca_nemestrina
ENSAMXG00000004294	SRBD1	93	56.373	ENSMLEG00000000745	SRBD1	87	59.679	Mandrillus_leucophaeus
ENSAMXG00000004294	SRBD1	100	63.439	ENSMAMG00000021921	si:ch211-117n7.8	100	63.340	Mastacembelus_armatus
ENSAMXG00000004294	SRBD1	100	64.120	ENSMZEG00005027369	si:ch211-117n7.8	100	62.607	Maylandia_zebra
ENSAMXG00000004294	SRBD1	80	60.124	ENSMGAG00000010273	SRBD1	100	59.876	Meleagris_gallopavo
ENSAMXG00000004294	SRBD1	79	59.413	ENSMAUG00000013916	Srbd1	95	59.503	Mesocricetus_auratus
ENSAMXG00000004294	SRBD1	93	56.604	ENSMICG00000007835	SRBD1	86	59.516	Microcebus_murinus
ENSAMXG00000004294	SRBD1	97	55.102	ENSMOCG00000018716	Srbd1	88	59.132	Microtus_ochrogaster
ENSAMXG00000004294	SRBD1	97	64.718	ENSMMOG00000007507	si:ch211-117n7.8	100	63.934	Mola_mola
ENSAMXG00000004294	SRBD1	100	63.168	ENSMALG00000001562	si:ch211-117n7.8	100	62.451	Monopterus_albus
ENSAMXG00000004294	SRBD1	94	56.277	MGP_CAROLIEiJ_G0021934	Srbd1	99	61.513	Mus_caroli
ENSAMXG00000004294	SRBD1	93	56.092	ENSMUSG00000024135	Srbd1	99	58.273	Mus_musculus
ENSAMXG00000004294	SRBD1	85	59.835	MGP_PahariEiJ_G0020924	Srbd1	86	59.812	Mus_pahari
ENSAMXG00000004294	SRBD1	93	56.105	MGP_SPRETEiJ_G0022850	Srbd1	85	60.617	Mus_spretus
ENSAMXG00000004294	SRBD1	93	57.306	ENSMLUG00000007039	SRBD1	87	59.729	Myotis_lucifugus
ENSAMXG00000004294	SRBD1	93	55.453	ENSNGAG00000011893	Srbd1	92	56.217	Nannospalax_galili
ENSAMXG00000004294	SRBD1	97	64.476	ENSNBRG00000012873	si:ch211-117n7.8	99	63.701	Neolamprologus_brichardi
ENSAMXG00000004294	SRBD1	93	56.004	ENSNLEG00000016877	SRBD1	86	59.285	Nomascus_leucogenys
ENSAMXG00000004294	SRBD1	93	57.281	ENSODEG00000012095	SRBD1	92	58.000	Octodon_degus
ENSAMXG00000004294	SRBD1	100	63.733	ENSONIG00000000945	si:ch211-117n7.8	100	70.784	Oreochromis_niloticus
ENSAMXG00000004294	SRBD1	94	57.128	ENSOCUG00000015385	SRBD1	91	58.443	Oryctolagus_cuniculus
ENSAMXG00000004294	SRBD1	100	59.768	ENSORLG00000004427	si:ch211-117n7.8	100	59.381	Oryzias_latipes
ENSAMXG00000004294	SRBD1	100	62.561	ENSORLG00020012792	si:ch211-117n7.8	100	61.680	Oryzias_latipes_hni
ENSAMXG00000004294	SRBD1	100	62.233	ENSORLG00015018598	si:ch211-117n7.8	100	61.063	Oryzias_latipes_hsok
ENSAMXG00000004294	SRBD1	99	63.627	ENSOMEG00000012229	si:ch211-117n7.8	99	68.561	Oryzias_melastigma
ENSAMXG00000004294	SRBD1	94	53.711	ENSOGAG00000001076	SRBD1	86	57.822	Otolemur_garnettii
ENSAMXG00000004294	SRBD1	93	52.642	ENSOARG00000005958	SRBD1	85	56.869	Ovis_aries
ENSAMXG00000004294	SRBD1	93	55.870	ENSPPAG00000038442	SRBD1	86	59.516	Pan_paniscus
ENSAMXG00000004294	SRBD1	93	56.695	ENSPPRG00000003449	SRBD1	85	60.303	Panthera_pardus
ENSAMXG00000004294	SRBD1	93	56.590	ENSPTIG00000012495	SRBD1	85	60.303	Panthera_tigris_altaica
ENSAMXG00000004294	SRBD1	93	55.975	ENSPTRG00000011889	SRBD1	86	59.631	Pan_troglodytes
ENSAMXG00000004294	SRBD1	93	56.269	ENSPANG00000008063	SRBD1	87	59.679	Papio_anubis
ENSAMXG00000004294	SRBD1	99	66.163	ENSPKIG00000021973	si:ch211-117n7.8	99	65.962	Paramormyrops_kingsleyae
ENSAMXG00000004294	SRBD1	85	60.484	ENSPSIG00000008992	SRBD1	87	60.369	Pelodiscus_sinensis
ENSAMXG00000004294	SRBD1	84	69.376	ENSPMGG00000013348	si:ch211-117n7.8	94	65.514	Periophthalmus_magnuspinnatus
ENSAMXG00000004294	SRBD1	98	53.571	ENSPEMG00000020684	Srbd1	86	59.060	Peromyscus_maniculatus_bairdii
ENSAMXG00000004294	SRBD1	100	64.654	ENSPFOG00000010650	si:ch211-117n7.8	100	62.369	Poecilia_formosa
ENSAMXG00000004294	SRBD1	100	64.557	ENSPLAG00000002141	si:ch211-117n7.8	100	62.273	Poecilia_latipinna
ENSAMXG00000004294	SRBD1	100	64.557	ENSPMEG00000018537	si:ch211-117n7.8	100	62.273	Poecilia_mexicana
ENSAMXG00000004294	SRBD1	100	64.427	ENSPREG00000003258	si:ch211-117n7.8	100	62.977	Poecilia_reticulata
ENSAMXG00000004294	SRBD1	93	52.465	ENSPPYG00000012444	SRBD1	87	55.091	Pongo_abelii
ENSAMXG00000004294	SRBD1	76	56.308	ENSPCAG00000005629	SRBD1	80	56.175	Procavia_capensis
ENSAMXG00000004294	SRBD1	93	48.697	ENSPCOG00000017669	SRBD1	85	50.803	Propithecus_coquereli
ENSAMXG00000004294	SRBD1	93	49.690	ENSPVAG00000001782	SRBD1	89	50.780	Pteropus_vampyrus
ENSAMXG00000004294	SRBD1	97	62.948	ENSPNYG00000000508	si:ch211-117n7.8	99	62.129	Pundamilia_nyererei
ENSAMXG00000004294	SRBD1	100	82.477	ENSPNAG00000013492	SRBD1	100	82.477	Pygocentrus_nattereri
ENSAMXG00000004294	SRBD1	85	60.424	ENSRNOG00000014720	Srbd1	85	60.306	Rattus_norvegicus
ENSAMXG00000004294	SRBD1	93	55.843	ENSRBIG00000033486	SRBD1	87	59.221	Rhinopithecus_bieti
ENSAMXG00000004294	SRBD1	93	55.843	ENSRROG00000041599	SRBD1	87	59.221	Rhinopithecus_roxellana
ENSAMXG00000004294	SRBD1	93	55.946	ENSSBOG00000024982	SRBD1	87	58.992	Saimiri_boliviensis_boliviensis
ENSAMXG00000004294	SRBD1	93	68.348	ENSSFOG00015001128	si:ch211-117n7.8	94	71.247	Scleropages_formosus
ENSAMXG00000004294	SRBD1	99	63.434	ENSSMAG00000018256	si:ch211-117n7.8	99	61.759	Scophthalmus_maximus
ENSAMXG00000004294	SRBD1	93	66.187	ENSSLDG00000023189	si:ch211-117n7.8	99	63.807	Seriola_lalandi_dorsalis
ENSAMXG00000004294	SRBD1	93	53.340	ENSSARG00000009740	SRBD1	94	52.853	Sorex_araneus
ENSAMXG00000004294	SRBD1	84	62.708	ENSSPUG00000010475	SRBD1	99	59.511	Sphenodon_punctatus
ENSAMXG00000004294	SRBD1	93	66.165	ENSSPAG00000008092	-	99	62.849	Stegastes_partitus
ENSAMXG00000004294	SRBD1	93	56.849	ENSSSCG00000008445	SRBD1	92	56.977	Sus_scrofa
ENSAMXG00000004294	SRBD1	83	62.307	ENSTGUG00000003878	SRBD1	100	62.217	Taeniopygia_guttata
ENSAMXG00000004294	SRBD1	99	61.845	ENSTRUG00000007080	si:ch211-117n7.8	98	67.151	Takifugu_rubripes
ENSAMXG00000004294	SRBD1	97	61.368	ENSTNIG00000007464	si:ch211-117n7.8	84	67.133	Tetraodon_nigroviridis
ENSAMXG00000004294	SRBD1	74	80.851	ENSTBEG00000004556	SRBD1	67	80.851	Tupaia_belangeri
ENSAMXG00000004294	SRBD1	86	58.974	ENSTTRG00000011871	SRBD1	76	61.806	Tursiops_truncatus
ENSAMXG00000004294	SRBD1	93	56.962	ENSUAMG00000008126	SRBD1	97	56.884	Ursus_americanus
ENSAMXG00000004294	SRBD1	93	56.813	ENSUMAG00000012902	SRBD1	85	60.393	Ursus_maritimus
ENSAMXG00000004294	SRBD1	84	60.727	ENSVPAG00000006825	SRBD1	93	60.492	Vicugna_pacos
ENSAMXG00000004294	SRBD1	93	56.751	ENSVVUG00000005389	SRBD1	86	60.393	Vulpes_vulpes
ENSAMXG00000004294	SRBD1	98	47.206	ENSXETG00000002760	srbd1	98	46.435	Xenopus_tropicalis
ENSAMXG00000004294	SRBD1	100	64.195	ENSXMAG00000016861	si:ch211-117n7.8	100	63.056	Xiphophorus_maculatus