EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000004589 (Gene tree)
Gene ID: 103035501
Gene Symbol: snrpd1
Alias: CHUNP6882|fk26a01|wu:fk26a01|zgc:86929
Full Name: small nuclear ribonucleoprotein D1 polypeptide
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 3940 bases
Position: chrAPWO02000146.1:213193-217132
Accession: 103035501
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000043984	LSM	PF01423.22	6e-19	1	1
ENSAMXP00000004695	LSM	PF01423.22	6.7e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000004695	-	1052	XM_007260680	ENSAMXP00000004695	119 (aa)	XP_007260742	W5KAT4
ENSAMXT00000040173	-	1553	-	ENSAMXP00000043984	124 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000004589's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000004589's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000004589	snrpd1	100	97.479	ENSG00000167088	SNRPD1	100	97.479	Homo_sapiens
ENSAMXG00000004589	snrpd1	100	99.160	ENSAPOG00000019446	snrpd1	65	99.160	Acanthochromis_polyacanthus
ENSAMXG00000004589	snrpd1	98	95.726	ENSAMEG00000002576	SNRPD1	100	95.726	Ailuropoda_melanoleuca
ENSAMXG00000004589	snrpd1	94	99.107	ENSACIG00000011263	snrpd1	100	99.107	Amphilophus_citrinellus
ENSAMXG00000004589	snrpd1	100	99.160	ENSAOCG00000007406	snrpd1	100	99.160	Amphiprion_ocellaris
ENSAMXG00000004589	snrpd1	100	94.958	ENSAPEG00000014961	snrpd1	100	94.958	Amphiprion_percula
ENSAMXG00000004589	snrpd1	94	99.107	ENSAPEG00000012539	SNRPD1	100	99.107	Amphiprion_percula
ENSAMXG00000004589	snrpd1	100	99.160	ENSATEG00000014399	snrpd1	100	99.160	Anabas_testudineus
ENSAMXG00000004589	snrpd1	97	97.391	ENSAPLG00000012256	SNRPD1	97	97.391	Anas_platyrhynchos
ENSAMXG00000004589	snrpd1	100	97.479	ENSACAG00000006364	SNRPD1	100	97.479	Anolis_carolinensis
ENSAMXG00000004589	snrpd1	100	97.479	ENSANAG00000025641	SNRPD1	100	97.479	Aotus_nancymaae
ENSAMXG00000004589	snrpd1	94	99.107	ENSACLG00000017406	snrpd1	100	99.107	Astatotilapia_calliptera
ENSAMXG00000004589	snrpd1	81	94.792	ENSBTAG00000012376	-	72	94.792	Bos_taurus
ENSAMXG00000004589	snrpd1	100	97.479	ENSBTAG00000008292	SNRPD1	100	97.479	Bos_taurus
ENSAMXG00000004589	snrpd1	79	91.489	ENSBTAG00000055316	-	81	91.489	Bos_taurus
ENSAMXG00000004589	snrpd1	94	93.750	ENSBTAG00000047266	-	94	93.750	Bos_taurus
ENSAMXG00000004589	snrpd1	74	78.409	WBGene00004916	snr-3	82	69.903	Caenorhabditis_elegans
ENSAMXG00000004589	snrpd1	100	97.479	ENSCJAG00000042955	SNRPD1	100	97.479	Callithrix_jacchus
ENSAMXG00000004589	snrpd1	100	97.479	ENSCAFG00000018247	SNRPD1	100	97.479	Canis_familiaris
ENSAMXG00000004589	snrpd1	80	96.842	ENSCAFG00020015914	SNRPD1	74	96.842	Canis_lupus_dingo
ENSAMXG00000004589	snrpd1	100	94.958	ENSCHIG00000005557	SNRPD1	100	94.958	Capra_hircus
ENSAMXG00000004589	snrpd1	100	97.479	ENSTSYG00000030028	SNRPD1	100	97.479	Carlito_syrichta
ENSAMXG00000004589	snrpd1	97	96.522	ENSCAPG00000008103	SNRPD1	99	96.522	Cavia_aperea
ENSAMXG00000004589	snrpd1	100	97.479	ENSCPOG00000004679	SNRPD1	100	97.479	Cavia_porcellus
ENSAMXG00000004589	snrpd1	100	97.479	ENSCCAG00000032658	SNRPD1	100	97.479	Cebus_capucinus
ENSAMXG00000004589	snrpd1	100	96.639	ENSCCAG00000020611	-	100	96.639	Cebus_capucinus
ENSAMXG00000004589	snrpd1	94	93.750	ENSCCAG00000016652	-	94	93.750	Cebus_capucinus
ENSAMXG00000004589	snrpd1	81	92.708	ENSCCAG00000005390	-	81	92.708	Cebus_capucinus
ENSAMXG00000004589	snrpd1	100	97.479	ENSCATG00000039978	SNRPD1	100	97.479	Cercocebus_atys
ENSAMXG00000004589	snrpd1	100	97.479	ENSCLAG00000008691	SNRPD1	100	97.479	Chinchilla_lanigera
ENSAMXG00000004589	snrpd1	100	97.479	ENSCSAG00000017654	SNRPD1	100	97.479	Chlorocebus_sabaeus
ENSAMXG00000004589	snrpd1	100	97.479	ENSCPBG00000023143	SNRPD1	100	97.479	Chrysemys_picta_bellii
ENSAMXG00000004589	snrpd1	72	84.884	ENSCING00000024100	-	84	74.286	Ciona_intestinalis
ENSAMXG00000004589	snrpd1	73	85.057	ENSCSAVG00000004578	-	78	78.351	Ciona_savignyi
ENSAMXG00000004589	snrpd1	100	97.479	ENSCGRG00001021055	-	100	97.479	Cricetulus_griseus_chok1gshd
ENSAMXG00000004589	snrpd1	81	72.917	ENSCGRG00001009945	-	94	67.619	Cricetulus_griseus_chok1gshd
ENSAMXG00000004589	snrpd1	81	72.917	ENSCGRG00000006224	-	94	67.619	Cricetulus_griseus_crigri
ENSAMXG00000004589	snrpd1	100	97.479	ENSCGRG00000000490	-	100	97.479	Cricetulus_griseus_crigri
ENSAMXG00000004589	snrpd1	100	97.479	ENSCSEG00000018141	snrpd1	100	97.479	Cynoglossus_semilaevis
ENSAMXG00000004589	snrpd1	100	99.160	ENSCVAG00000000534	snrpd1	100	99.160	Cyprinodon_variegatus
ENSAMXG00000004589	snrpd1	100	100.000	ENSDARG00000011648	snrpd1	100	100.000	Danio_rerio
ENSAMXG00000004589	snrpd1	100	97.479	ENSDNOG00000040310	SNRPD1	100	97.479	Dasypus_novemcinctus
ENSAMXG00000004589	snrpd1	100	97.479	ENSDORG00000008349	Snrpd1	100	97.479	Dipodomys_ordii
ENSAMXG00000004589	snrpd1	79	80.851	FBgn0261933	SmD1	85	73.585	Drosophila_melanogaster
ENSAMXG00000004589	snrpd1	74	96.591	ENSETEG00000011689	SNRPD1	74	96.591	Echinops_telfairi
ENSAMXG00000004589	snrpd1	94	92.857	ENSEBUG00000003170	snrpd1	96	91.753	Eptatretus_burgeri
ENSAMXG00000004589	snrpd1	94	97.321	ENSEASG00005002433	SNRPD1	100	97.321	Equus_asinus_asinus
ENSAMXG00000004589	snrpd1	94	97.321	ENSECAG00000014373	SNRPD1	100	97.321	Equus_caballus
ENSAMXG00000004589	snrpd1	75	96.629	ENSEEUG00000004987	SNRPD1	100	96.629	Erinaceus_europaeus
ENSAMXG00000004589	snrpd1	93	88.288	ENSELUG00000000088	snrpd1	79	98.936	Esox_lucius
ENSAMXG00000004589	snrpd1	100	97.479	ENSFCAG00000012352	SNRPD1	100	97.479	Felis_catus
ENSAMXG00000004589	snrpd1	94	97.321	ENSFALG00000002646	SNRPD1	100	97.321	Ficedula_albicollis
ENSAMXG00000004589	snrpd1	100	100.000	ENSGMOG00000015607	snrpd1	100	100.000	Gadus_morhua
ENSAMXG00000004589	snrpd1	100	97.479	ENSGALG00000041334	SNRPD1	100	97.479	Gallus_gallus
ENSAMXG00000004589	snrpd1	100	99.160	ENSGAFG00000011171	snrpd1	100	99.160	Gambusia_affinis
ENSAMXG00000004589	snrpd1	100	100.000	ENSGACG00000005201	SNRPD1	100	100.000	Gasterosteus_aculeatus
ENSAMXG00000004589	snrpd1	100	97.479	ENSGAGG00000011197	SNRPD1	100	97.479	Gopherus_agassizii
ENSAMXG00000004589	snrpd1	100	97.479	ENSGGOG00000041053	SNRPD1	100	97.479	Gorilla_gorilla
ENSAMXG00000004589	snrpd1	81	91.667	ENSGGOG00000026706	-	80	91.667	Gorilla_gorilla
ENSAMXG00000004589	snrpd1	100	99.160	ENSHBUG00000003236	snrpd1	100	99.160	Haplochromis_burtoni
ENSAMXG00000004589	snrpd1	100	97.479	ENSHGLG00000007152	SNRPD1	100	97.479	Heterocephalus_glaber_female
ENSAMXG00000004589	snrpd1	100	97.479	ENSHGLG00100008618	SNRPD1	100	97.479	Heterocephalus_glaber_male
ENSAMXG00000004589	snrpd1	100	99.160	ENSIPUG00000003576	snrpd1	100	99.160	Ictalurus_punctatus
ENSAMXG00000004589	snrpd1	100	97.479	ENSSTOG00000000485	SNRPD1	100	97.479	Ictidomys_tridecemlineatus
ENSAMXG00000004589	snrpd1	100	97.479	ENSJJAG00000017698	Snrpd1	100	97.479	Jaculus_jaculus
ENSAMXG00000004589	snrpd1	100	99.160	ENSKMAG00000005987	snrpd1	100	99.160	Kryptolebias_marmoratus
ENSAMXG00000004589	snrpd1	100	99.160	ENSLBEG00000003327	snrpd1	100	99.160	Labrus_bergylta
ENSAMXG00000004589	snrpd1	100	97.479	ENSLACG00000001955	SNRPD1	100	97.479	Latimeria_chalumnae
ENSAMXG00000004589	snrpd1	98	96.581	ENSLOCG00000002003	snrpd1	100	96.581	Lepisosteus_oculatus
ENSAMXG00000004589	snrpd1	93	95.495	ENSLAFG00000005819	SNRPD1	94	95.495	Loxodonta_africana
ENSAMXG00000004589	snrpd1	100	97.479	ENSMFAG00000042080	SNRPD1	100	97.479	Macaca_fascicularis
ENSAMXG00000004589	snrpd1	96	97.368	ENSMMUG00000003992	SNRPD1	97	97.368	Macaca_mulatta
ENSAMXG00000004589	snrpd1	100	97.479	ENSMNEG00000041296	SNRPD1	100	97.479	Macaca_nemestrina
ENSAMXG00000004589	snrpd1	100	97.479	ENSMLEG00000028659	SNRPD1	100	97.479	Mandrillus_leucophaeus
ENSAMXG00000004589	snrpd1	100	99.160	ENSMAMG00000012971	snrpd1	100	99.160	Mastacembelus_armatus
ENSAMXG00000004589	snrpd1	100	99.160	ENSMZEG00005004685	snrpd1	100	99.160	Maylandia_zebra
ENSAMXG00000004589	snrpd1	97	97.391	ENSMGAG00000011598	SNRPD1	95	97.391	Meleagris_gallopavo
ENSAMXG00000004589	snrpd1	81	80.208	ENSMAUG00000016467	-	86	80.208	Mesocricetus_auratus
ENSAMXG00000004589	snrpd1	81	80.208	ENSMAUG00000016502	-	86	80.208	Mesocricetus_auratus
ENSAMXG00000004589	snrpd1	95	81.356	ENSMAUG00000006829	-	76	81.356	Mesocricetus_auratus
ENSAMXG00000004589	snrpd1	100	97.479	ENSMICG00000044066	SNRPD1	100	97.479	Microcebus_murinus
ENSAMXG00000004589	snrpd1	100	97.479	ENSMOCG00000017367	Snrpd1	100	97.479	Microtus_ochrogaster
ENSAMXG00000004589	snrpd1	100	99.160	ENSMMOG00000019089	snrpd1	100	99.160	Mola_mola
ENSAMXG00000004589	snrpd1	100	97.479	ENSMODG00000021487	SNRPD1	100	97.479	Monodelphis_domestica
ENSAMXG00000004589	snrpd1	100	99.160	ENSMALG00000014459	snrpd1	100	99.160	Monopterus_albus
ENSAMXG00000004589	snrpd1	100	97.479	MGP_CAROLIEiJ_G0021994	Snrpd1	100	97.479	Mus_caroli
ENSAMXG00000004589	snrpd1	100	97.479	ENSMUSG00000002477	Snrpd1	100	97.479	Mus_musculus
ENSAMXG00000004589	snrpd1	100	97.479	MGP_PahariEiJ_G0018731	Snrpd1	100	97.479	Mus_pahari
ENSAMXG00000004589	snrpd1	100	97.479	MGP_SPRETEiJ_G0022910	Snrpd1	100	97.479	Mus_spretus
ENSAMXG00000004589	snrpd1	98	95.726	ENSMPUG00000005567	-	100	95.726	Mustela_putorius_furo
ENSAMXG00000004589	snrpd1	100	96.639	ENSMPUG00000020041	-	100	96.639	Mustela_putorius_furo
ENSAMXG00000004589	snrpd1	96	96.491	ENSMLUG00000009124	SNRPD1	88	96.491	Myotis_lucifugus
ENSAMXG00000004589	snrpd1	100	97.479	ENSNGAG00000023946	Snrpd1	100	97.479	Nannospalax_galili
ENSAMXG00000004589	snrpd1	79	98.936	ENSNBRG00000012119	snrpd1	78	98.936	Neolamprologus_brichardi
ENSAMXG00000004589	snrpd1	100	94.958	ENSNLEG00000031430	SNRPD1	100	94.958	Nomascus_leucogenys
ENSAMXG00000004589	snrpd1	100	97.479	ENSODEG00000005764	SNRPD1	100	97.479	Octodon_degus
ENSAMXG00000004589	snrpd1	100	99.160	ENSONIG00000002486	snrpd1	100	99.160	Oreochromis_niloticus
ENSAMXG00000004589	snrpd1	82	86.735	ENSOANG00000004638	-	82	86.735	Ornithorhynchus_anatinus
ENSAMXG00000004589	snrpd1	100	96.639	ENSOCUG00000014399	-	100	96.639	Oryctolagus_cuniculus
ENSAMXG00000004589	snrpd1	98	95.726	ENSOCUG00000023761	-	100	95.726	Oryctolagus_cuniculus
ENSAMXG00000004589	snrpd1	94	99.107	ENSORLG00000012516	snrpd1	100	99.107	Oryzias_latipes
ENSAMXG00000004589	snrpd1	100	99.160	ENSORLG00020005743	snrpd1	100	99.160	Oryzias_latipes_hni
ENSAMXG00000004589	snrpd1	100	99.160	ENSORLG00015013402	snrpd1	100	99.160	Oryzias_latipes_hsok
ENSAMXG00000004589	snrpd1	100	99.160	ENSOMEG00000011571	snrpd1	100	99.160	Oryzias_melastigma
ENSAMXG00000004589	snrpd1	100	94.118	ENSOGAG00000007833	SNRPD1	100	94.118	Otolemur_garnettii
ENSAMXG00000004589	snrpd1	100	92.437	ENSOARG00000003413	-	85	92.437	Ovis_aries
ENSAMXG00000004589	snrpd1	100	97.479	ENSPPAG00000042593	SNRPD1	100	97.479	Pan_paniscus
ENSAMXG00000004589	snrpd1	94	71.429	ENSPPRG00000005009	-	92	71.429	Panthera_pardus
ENSAMXG00000004589	snrpd1	100	97.479	ENSPPRG00000002399	SNRPD1	100	97.479	Panthera_pardus
ENSAMXG00000004589	snrpd1	96	97.368	ENSPTIG00000013206	SNRPD1	100	97.368	Panthera_tigris_altaica
ENSAMXG00000004589	snrpd1	100	97.479	ENSPTRG00000009909	SNRPD1	100	97.479	Pan_troglodytes
ENSAMXG00000004589	snrpd1	86	91.176	ENSPTRG00000050159	-	87	91.176	Pan_troglodytes
ENSAMXG00000004589	snrpd1	100	97.479	ENSPANG00000023478	SNRPD1	100	97.479	Papio_anubis
ENSAMXG00000004589	snrpd1	100	97.479	ENSPKIG00000003985	SNRPD1	100	97.479	Paramormyrops_kingsleyae
ENSAMXG00000004589	snrpd1	94	98.214	ENSPKIG00000021610	snrpd1	100	98.214	Paramormyrops_kingsleyae
ENSAMXG00000004589	snrpd1	100	99.160	ENSPMGG00000001862	snrpd1	100	99.160	Periophthalmus_magnuspinnatus
ENSAMXG00000004589	snrpd1	100	97.479	ENSPEMG00000014773	-	100	97.479	Peromyscus_maniculatus_bairdii
ENSAMXG00000004589	snrpd1	86	82.692	ENSPMAG00000003938	-	85	82.692	Petromyzon_marinus
ENSAMXG00000004589	snrpd1	100	97.479	ENSPCIG00000020320	SNRPD1	100	97.479	Phascolarctos_cinereus
ENSAMXG00000004589	snrpd1	100	94.118	ENSPFOG00000012448	SNRPD1	100	94.118	Poecilia_formosa
ENSAMXG00000004589	snrpd1	100	94.118	ENSPLAG00000006738	snrpd1	100	94.118	Poecilia_latipinna
ENSAMXG00000004589	snrpd1	100	94.118	ENSPMEG00000021942	snrpd1	100	94.118	Poecilia_mexicana
ENSAMXG00000004589	snrpd1	100	99.160	ENSPREG00000007094	snrpd1	100	99.160	Poecilia_reticulata
ENSAMXG00000004589	snrpd1	100	97.479	ENSPPYG00000025874	SNRPD1	100	97.479	Pongo_abelii
ENSAMXG00000004589	snrpd1	100	97.479	ENSPCOG00000013327	SNRPD1	100	97.479	Propithecus_coquereli
ENSAMXG00000004589	snrpd1	100	97.479	ENSPVAG00000005511	SNRPD1	80	97.479	Pteropus_vampyrus
ENSAMXG00000004589	snrpd1	100	99.160	ENSPNAG00000017824	snrpd1	100	99.160	Pygocentrus_nattereri
ENSAMXG00000004589	snrpd1	100	97.479	ENSRNOG00000013714	Snrpd1	100	97.479	Rattus_norvegicus
ENSAMXG00000004589	snrpd1	100	97.479	ENSRBIG00000022996	SNRPD1	100	97.479	Rhinopithecus_bieti
ENSAMXG00000004589	snrpd1	100	97.479	ENSRROG00000027640	SNRPD1	100	97.479	Rhinopithecus_roxellana
ENSAMXG00000004589	snrpd1	100	97.479	ENSSBOG00000020998	SNRPD1	100	97.479	Saimiri_boliviensis_boliviensis
ENSAMXG00000004589	snrpd1	100	97.479	ENSSHAG00000011791	SNRPD1	100	97.479	Sarcophilus_harrisii
ENSAMXG00000004589	snrpd1	100	98.319	ENSSFOG00015008809	-	100	98.319	Scleropages_formosus
ENSAMXG00000004589	snrpd1	100	98.319	ENSSFOG00015022253	-	100	98.319	Scleropages_formosus
ENSAMXG00000004589	snrpd1	100	98.319	ENSSMAG00000008765	snrpd1	100	98.319	Scophthalmus_maximus
ENSAMXG00000004589	snrpd1	97	97.414	ENSSDUG00000010521	snrpd1	98	97.414	Seriola_dumerili
ENSAMXG00000004589	snrpd1	100	99.160	ENSSLDG00000011858	snrpd1	100	99.160	Seriola_lalandi_dorsalis
ENSAMXG00000004589	snrpd1	56	97.015	ENSSARG00000004271	SNRPD1	100	97.015	Sorex_araneus
ENSAMXG00000004589	snrpd1	100	97.479	ENSSPUG00000002824	SNRPD1	100	97.479	Sphenodon_punctatus
ENSAMXG00000004589	snrpd1	94	99.107	ENSSPAG00000015229	snrpd1	100	99.107	Stegastes_partitus
ENSAMXG00000004589	snrpd1	100	97.479	ENSSSCG00000003701	SNRPD1	100	97.479	Sus_scrofa
ENSAMXG00000004589	snrpd1	97	97.391	ENSTGUG00000005095	SNRPD1	97	97.391	Taeniopygia_guttata
ENSAMXG00000004589	snrpd1	94	99.107	ENSTRUG00000008977	snrpd1	100	99.107	Takifugu_rubripes
ENSAMXG00000004589	snrpd1	81	94.792	ENSTNIG00000001224	snrpd1	92	94.792	Tetraodon_nigroviridis
ENSAMXG00000004589	snrpd1	74	96.591	ENSTBEG00000013776	SNRPD1	100	96.591	Tupaia_belangeri
ENSAMXG00000004589	snrpd1	97	97.391	ENSTTRG00000002654	SNRPD1	100	97.391	Tursiops_truncatus
ENSAMXG00000004589	snrpd1	96	97.368	ENSUAMG00000013431	SNRPD1	97	97.368	Ursus_americanus
ENSAMXG00000004589	snrpd1	100	97.479	ENSUMAG00000019740	SNRPD1	100	97.479	Ursus_maritimus
ENSAMXG00000004589	snrpd1	100	97.479	ENSVPAG00000010056	SNRPD1	80	97.479	Vicugna_pacos
ENSAMXG00000004589	snrpd1	94	97.321	ENSVVUG00000004009	SNRPD1	100	97.321	Vulpes_vulpes
ENSAMXG00000004589	snrpd1	94	95.536	ENSXETG00000027354	snrpd1	94	95.536	Xenopus_tropicalis
ENSAMXG00000004589	snrpd1	100	99.160	ENSXCOG00000020108	snrpd1	100	99.160	Xiphophorus_couchianus
ENSAMXG00000004589	snrpd1	100	99.160	ENSXMAG00000003368	snrpd1	100	99.160	Xiphophorus_maculatus