EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAMXG00000004786 (Gene tree)
Gene ID
103041693
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Minus strand
Length
12382 bases
Position
chr3:41564724-41577105
Accession
103041693
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000047734CPSF73-100_CPF11718.81.9e-5611
ENSAMXP00000028554CPSF73-100_CPF11718.82.9e-5012
ENSAMXP00000028554CPSF73-100_CPF11718.82.9e-5022
ENSAMXP00000004902CPSF73-100_CPF11718.82.8e-3811
ENSAMXP00000028554Beta-CaspPF10996.88.4e-3411
ENSAMXP00000004902Beta-CaspPF10996.88.6e-3411
ENSAMXP00000047734Beta-CaspPF10996.89.8e-3411
ENSAMXP00000004902Lactamase_BPF00753.271.6e-1811
ENSAMXP00000047734Lactamase_BPF00753.271.8e-1811
ENSAMXP00000028554Lactamase_BPF00753.274.3e-0811
ENSAMXP00000028554RMMBLPF07521.121.1e-2111
ENSAMXP00000004902RMMBLPF07521.121.3e-2111
ENSAMXP00000047734RMMBLPF07521.121.4e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000043814-1869-ENSAMXP00000028554622 (aa)--
ENSAMXT00000040443-4849XM_007235251ENSAMXP00000047734690 (aa)XP_007235313UPI0003CD52D1
ENSAMXT00000004902-1974-ENSAMXP00000004902657 (aa)-W5KBE1
Gene Model
Click here to download ENSAMXG00000004786's gene model file
Pathways
Pathway IDPathway NameSource
amex03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000004786's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAMXG00000004786cpsf37437.425ENSAMXG00000038758ints118237.425
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000004786cpsf39888.235ENSG00000119203CPSF3100100.000Homo_sapiens
ENSAMXG00000004786cpsf39987.355ENSAPOG00000022087cpsf39988.964Acanthochromis_polyacanthus
ENSAMXG00000004786cpsf37798.228ENSAPOG00000012241CPSF39198.228Acanthochromis_polyacanthus
ENSAMXG00000004786cpsf39888.382ENSAMEG00000008493CPSF39988.382Ailuropoda_melanoleuca
ENSAMXG00000004786cpsf39985.016ENSACIG00000009846cpsf39985.016Amphilophus_citrinellus
ENSAMXG00000004786cpsf310086.970ENSACIG00000023663CPSF310086.970Amphilophus_citrinellus
ENSAMXG00000004786cpsf39987.355ENSAOCG00000022056cpsf39693.000Amphiprion_ocellaris
ENSAMXG00000004786cpsf310089.565ENSAOCG00000010077CPSF310089.565Amphiprion_ocellaris
ENSAMXG00000004786cpsf310089.565ENSAPEG00000021167CPSF310089.565Amphiprion_percula
ENSAMXG00000004786cpsf39987.500ENSAPEG00000019526cpsf39989.041Amphiprion_percula
ENSAMXG00000004786cpsf39987.355ENSATEG00000003959cpsf39987.355Anabas_testudineus
ENSAMXG00000004786cpsf310086.647ENSATEG00000014525CPSF310086.647Anabas_testudineus
ENSAMXG00000004786cpsf39787.481ENSAPLG00000006941CPSF39887.481Anas_platyrhynchos
ENSAMXG00000004786cpsf39983.175ENSACAG00000001759CPSF39985.512Anolis_carolinensis
ENSAMXG00000004786cpsf39883.676ENSANAG00000031254CPSF39984.108Aotus_nancymaae
ENSAMXG00000004786cpsf310087.127ENSACLG00000018846CPSF310087.127Astatotilapia_calliptera
ENSAMXG00000004786cpsf39985.032ENSACLG00000014484cpsf39986.898Astatotilapia_calliptera
ENSAMXG00000004786cpsf39888.382ENSBTAG00000019735CPSF39988.382Bos_taurus
ENSAMXG00000004786cpsf38659.868WBGene00013460cpsf-38659.868Caenorhabditis_elegans
ENSAMXG00000004786cpsf39888.088ENSCJAG00000006276CPSF39988.088Callithrix_jacchus
ENSAMXG00000004786cpsf39888.382ENSCAFG00000003375CPSF39588.382Canis_familiaris
ENSAMXG00000004786cpsf38989.935ENSCAFG00020026799CPSF39989.935Canis_lupus_dingo
ENSAMXG00000004786cpsf39888.382ENSCHIG00000013973CPSF39988.382Capra_hircus
ENSAMXG00000004786cpsf39888.235ENSTSYG00000002967CPSF39988.235Carlito_syrichta
ENSAMXG00000004786cpsf39985.056ENSCAPG00000013851CPSF39987.688Cavia_aperea
ENSAMXG00000004786cpsf39887.794ENSCPOG00000011299CPSF39987.794Cavia_porcellus
ENSAMXG00000004786cpsf39888.088ENSCCAG00000036730CPSF39988.088Cebus_capucinus
ENSAMXG00000004786cpsf39886.176ENSCATG00000014770CPSF39992.388Cercocebus_atys
ENSAMXG00000004786cpsf39887.647ENSCLAG00000002727CPSF39987.647Chinchilla_lanigera
ENSAMXG00000004786cpsf39880.294ENSCSAG00000007125CPSF39980.294Chlorocebus_sabaeus
ENSAMXG00000004786cpsf385100.000ENSCHOG00000000180CPSF38563.620Choloepus_hoffmanni
ENSAMXG00000004786cpsf39987.971ENSCPBG00000014074CPSF39987.971Chrysemys_picta_bellii
ENSAMXG00000004786cpsf39867.686ENSCING00000007214-9867.686Ciona_intestinalis
ENSAMXG00000004786cpsf39878.363ENSCANG00000034435CPSF39978.363Colobus_angolensis_palliatus
ENSAMXG00000004786cpsf39887.794ENSCGRG00001013134Cpsf39987.794Cricetulus_griseus_chok1gshd
ENSAMXG00000004786cpsf39887.794ENSCGRG00000018319Cpsf39987.794Cricetulus_griseus_crigri
ENSAMXG00000004786cpsf310088.133ENSCSEG00000002021CPSF310088.253Cynoglossus_semilaevis
ENSAMXG00000004786cpsf310089.710ENSCVAG00000015067CPSF310089.710Cyprinodon_variegatus
ENSAMXG00000004786cpsf310091.594ENSDARG00000027649cpsf310091.594Danio_rerio
ENSAMXG00000004786cpsf39887.078ENSDNOG00000008940CPSF39587.078Dasypus_novemcinctus
ENSAMXG00000004786cpsf39488.889ENSDORG00000014263Cpsf39988.889Dipodomys_ordii
ENSAMXG00000004786cpsf39965.839FBgn0261065Cpsf739965.839Drosophila_melanogaster
ENSAMXG00000004786cpsf39476.543ENSETEG00000003893CPSF39976.543Echinops_telfairi
ENSAMXG00000004786cpsf39975.070ENSEBUG00000009018cpsf39975.493Eptatretus_burgeri
ENSAMXG00000004786cpsf39888.382ENSEASG00005003970CPSF39988.382Equus_asinus_asinus
ENSAMXG00000004786cpsf39888.382ENSECAG00000019911CPSF39692.074Equus_caballus
ENSAMXG00000004786cpsf39873.529ENSEEUG00000015422CPSF39973.529Erinaceus_europaeus
ENSAMXG00000004786cpsf39991.715ENSELUG00000013775cpsf39991.715Esox_lucius
ENSAMXG00000004786cpsf39888.382ENSFCAG00000007852CPSF39988.382Felis_catus
ENSAMXG00000004786cpsf39984.738ENSFALG00000006572CPSF39987.616Ficedula_albicollis
ENSAMXG00000004786cpsf39887.187ENSFDAG00000006317CPSF39987.187Fukomys_damarensis
ENSAMXG00000004786cpsf39986.192ENSFHEG00000014774cpsf39986.192Fundulus_heteroclitus
ENSAMXG00000004786cpsf36367.397ENSFHEG00000012186CPSF310068.780Fundulus_heteroclitus
ENSAMXG00000004786cpsf310087.681ENSGMOG00000003157cpsf310087.681Gadus_morhua
ENSAMXG00000004786cpsf39987.064ENSGALG00000016424CPSF39987.064Gallus_gallus
ENSAMXG00000004786cpsf310088.986ENSGAFG00000008016CPSF310088.986Gambusia_affinis
ENSAMXG00000004786cpsf310084.992ENSGAFG00000019449cpsf310084.992Gambusia_affinis
ENSAMXG00000004786cpsf37382.013ENSGAGG00000025583CPSF39384.368Gopherus_agassizii
ENSAMXG00000004786cpsf39985.374ENSGGOG00000001757CPSF39198.065Gorilla_gorilla
ENSAMXG00000004786cpsf36382.090ENSHBUG00000014332CPSF310082.090Haplochromis_burtoni
ENSAMXG00000004786cpsf39986.773ENSHBUG00000001188cpsf39986.773Haplochromis_burtoni
ENSAMXG00000004786cpsf39887.187ENSHGLG00000000666CPSF39887.187Heterocephalus_glaber_female
ENSAMXG00000004786cpsf39887.187ENSHGLG00100007765CPSF39887.187Heterocephalus_glaber_male
ENSAMXG00000004786cpsf39986.792ENSHCOG00000007251cpsf39986.792Hippocampus_comes
ENSAMXG00000004786cpsf39987.808ENSHCOG00000015957CPSF39987.808Hippocampus_comes
ENSAMXG00000004786cpsf310092.754ENSIPUG00000023488cpsf310092.754Ictalurus_punctatus
ENSAMXG00000004786cpsf39888.235ENSSTOG00000004476CPSF39988.235Ictidomys_tridecemlineatus
ENSAMXG00000004786cpsf39887.353ENSJJAG00000023415Cpsf39987.353Jaculus_jaculus
ENSAMXG00000004786cpsf39986.628ENSKMAG00000002806cpsf39986.628Kryptolebias_marmoratus
ENSAMXG00000004786cpsf310089.275ENSKMAG00000007317CPSF310089.275Kryptolebias_marmoratus
ENSAMXG00000004786cpsf39590.563ENSLBEG00000013492CPSF39990.563Labrus_bergylta
ENSAMXG00000004786cpsf35881.471ENSLBEG00000015018-9981.471Labrus_bergylta
ENSAMXG00000004786cpsf39980.959ENSLBEG00000020569cpsf39680.959Labrus_bergylta
ENSAMXG00000004786cpsf310081.476ENSLACG00000008308CPSF310081.476Latimeria_chalumnae
ENSAMXG00000004786cpsf310089.322ENSLOCG00000016823cpsf310089.322Lepisosteus_oculatus
ENSAMXG00000004786cpsf39886.892ENSLAFG00000009467CPSF39986.892Loxodonta_africana
ENSAMXG00000004786cpsf39888.088ENSMFAG00000001339CPSF39495.208Macaca_fascicularis
ENSAMXG00000004786cpsf39985.215ENSMMUG00000018038CPSF39295.208Macaca_mulatta
ENSAMXG00000004786cpsf39993.467ENSMNEG00000039447CPSF39997.600Macaca_nemestrina
ENSAMXG00000004786cpsf39888.235ENSMLEG00000026825CPSF39297.854Mandrillus_leucophaeus
ENSAMXG00000004786cpsf39986.483ENSMAMG00000003076cpsf39986.483Mastacembelus_armatus
ENSAMXG00000004786cpsf310087.224ENSMAMG00000008835CPSF310087.224Mastacembelus_armatus
ENSAMXG00000004786cpsf310089.420ENSMZEG00005006258CPSF310089.420Maylandia_zebra
ENSAMXG00000004786cpsf39986.773ENSMZEG00005014358cpsf39986.773Maylandia_zebra
ENSAMXG00000004786cpsf39984.579ENSMGAG00000013995CPSF39987.387Meleagris_gallopavo
ENSAMXG00000004786cpsf35877.600ENSMAUG00000000166Cpsf39978.667Mesocricetus_auratus
ENSAMXG00000004786cpsf39883.578ENSMICG00000002363CPSF39983.578Microcebus_murinus
ENSAMXG00000004786cpsf39983.225ENSMOCG00000020067Cpsf39984.118Microtus_ochrogaster
ENSAMXG00000004786cpsf37880.142ENSMMOG00000011923CPSF38580.142Mola_mola
ENSAMXG00000004786cpsf39982.496ENSMMOG00000018212CPSF39882.609Mola_mola
ENSAMXG00000004786cpsf39886.900ENSMODG00000014703CPSF39986.900Monodelphis_domestica
ENSAMXG00000004786cpsf39987.355ENSMALG00000016416cpsf39987.355Monopterus_albus
ENSAMXG00000004786cpsf39684.039ENSMALG00000011474CPSF310084.243Monopterus_albus
ENSAMXG00000004786cpsf39887.941MGP_CAROLIEiJ_G0017640Cpsf39987.941Mus_caroli
ENSAMXG00000004786cpsf39887.941ENSMUSG00000054309Cpsf39697.881Mus_musculus
ENSAMXG00000004786cpsf39887.794MGP_PahariEiJ_G0029397Cpsf39987.794Mus_pahari
ENSAMXG00000004786cpsf39887.941MGP_SPRETEiJ_G0018481Cpsf39987.941Mus_spretus
ENSAMXG00000004786cpsf39887.923ENSMPUG00000013213CPSF39987.923Mustela_putorius_furo
ENSAMXG00000004786cpsf39887.959ENSMLUG00000010636CPSF39987.959Myotis_lucifugus
ENSAMXG00000004786cpsf39887.794ENSNGAG00000019836Cpsf39987.794Nannospalax_galili
ENSAMXG00000004786cpsf310087.127ENSNBRG00000010525CPSF310087.127Neolamprologus_brichardi
ENSAMXG00000004786cpsf39986.773ENSNBRG00000004770cpsf39986.773Neolamprologus_brichardi
ENSAMXG00000004786cpsf39888.088ENSNLEG00000013359CPSF39198.065Nomascus_leucogenys
ENSAMXG00000004786cpsf39856.471ENSMEUG00000013117-9956.471Notamacropus_eugenii
ENSAMXG00000004786cpsf39879.676ENSOPRG00000008902CPSF39979.676Ochotona_princeps
ENSAMXG00000004786cpsf39888.088ENSODEG00000003129CPSF39988.088Octodon_degus
ENSAMXG00000004786cpsf39986.773ENSONIG00000018812cpsf39986.773Oreochromis_niloticus
ENSAMXG00000004786cpsf38884.369ENSOANG00000008577CPSF39985.968Ornithorhynchus_anatinus
ENSAMXG00000004786cpsf39888.235ENSOCUG00000003728CPSF39988.235Oryctolagus_cuniculus
ENSAMXG00000004786cpsf39985.756ENSORLG00000018854cpsf39985.756Oryzias_latipes
ENSAMXG00000004786cpsf39985.610ENSORLG00020013331cpsf39985.610Oryzias_latipes_hni
ENSAMXG00000004786cpsf39985.756ENSORLG00015011017cpsf39985.756Oryzias_latipes_hsok
ENSAMXG00000004786cpsf39986.192ENSOMEG00000010647cpsf39586.192Oryzias_melastigma
ENSAMXG00000004786cpsf39878.088ENSOGAG00000001680CPSF39978.088Otolemur_garnettii
ENSAMXG00000004786cpsf39888.382ENSOARG00000015073CPSF39988.382Ovis_aries
ENSAMXG00000004786cpsf39888.235ENSPPAG00000042457CPSF39198.065Pan_paniscus
ENSAMXG00000004786cpsf39888.088ENSPPRG00000016790CPSF39988.088Panthera_pardus
ENSAMXG00000004786cpsf39888.218ENSPTIG00000003920CPSF39988.218Panthera_tigris_altaica
ENSAMXG00000004786cpsf39888.235ENSPTRG00000011638CPSF39198.065Pan_troglodytes
ENSAMXG00000004786cpsf39888.088ENSPANG00000016798CPSF39495.208Papio_anubis
ENSAMXG00000004786cpsf310091.304ENSPKIG00000023646cpsf310091.304Paramormyrops_kingsleyae
ENSAMXG00000004786cpsf39886.765ENSPSIG00000016144CPSF39986.765Pelodiscus_sinensis
ENSAMXG00000004786cpsf310082.958ENSPMGG00000006141-10082.958Periophthalmus_magnuspinnatus
ENSAMXG00000004786cpsf36379.551ENSPMGG00000015311CPSF310080.741Periophthalmus_magnuspinnatus
ENSAMXG00000004786cpsf39887.500ENSPEMG00000017668Cpsf39987.500Peromyscus_maniculatus_bairdii
ENSAMXG00000004786cpsf37891.068ENSPMAG00000004841cpsf310089.358Petromyzon_marinus
ENSAMXG00000004786cpsf39984.579ENSPCIG00000009823CPSF39888.190Phascolarctos_cinereus
ENSAMXG00000004786cpsf310088.696ENSPFOG00000010418-10088.696Poecilia_formosa
ENSAMXG00000004786cpsf39986.647ENSPFOG00000015922cpsf39986.647Poecilia_formosa
ENSAMXG00000004786cpsf39986.647ENSPLAG00000000882cpsf39986.647Poecilia_latipinna
ENSAMXG00000004786cpsf36380.741ENSPLAG00000021300-10082.469Poecilia_latipinna
ENSAMXG00000004786cpsf39986.792ENSPMEG00000018309cpsf39986.792Poecilia_mexicana
ENSAMXG00000004786cpsf39985.714ENSPREG00000014875cpsf39985.714Poecilia_reticulata
ENSAMXG00000004786cpsf310083.333ENSPREG00000004482CPSF310083.333Poecilia_reticulata
ENSAMXG00000004786cpsf39883.971ENSPPYG00000012666CPSF39983.971Pongo_abelii
ENSAMXG00000004786cpsf38268.750ENSPCAG00000015042CPSF38966.414Procavia_capensis
ENSAMXG00000004786cpsf38689.964ENSPCOG00000023016CPSF39789.964Propithecus_coquereli
ENSAMXG00000004786cpsf39888.218ENSPVAG00000005324CPSF39988.218Pteropus_vampyrus
ENSAMXG00000004786cpsf38893.431ENSPNYG00000021047CPSF39193.431Pundamilia_nyererei
ENSAMXG00000004786cpsf39986.773ENSPNYG00000004405cpsf39986.773Pundamilia_nyererei
ENSAMXG00000004786cpsf310096.087ENSPNAG00000023060cpsf310096.087Pygocentrus_nattereri
ENSAMXG00000004786cpsf39887.923ENSRNOG00000052418Cpsf39987.923Rattus_norvegicus
ENSAMXG00000004786cpsf39883.235ENSRBIG00000041615CPSF39984.211Rhinopithecus_bieti
ENSAMXG00000004786cpsf39888.235ENSRROG00000033792CPSF39988.235Rhinopithecus_roxellana
ENSAMXG00000004786cpsf39140.489YLR277CYSH19440.489Saccharomyces_cerevisiae
ENSAMXG00000004786cpsf39981.558ENSSBOG00000027263CPSF39784.535Saimiri_boliviensis_boliviensis
ENSAMXG00000004786cpsf39887.794ENSSHAG00000007024CPSF39987.794Sarcophilus_harrisii
ENSAMXG00000004786cpsf310091.304ENSSFOG00015002108cpsf310091.325Scleropages_formosus
ENSAMXG00000004786cpsf39588.654ENSSMAG00000020534CPSF39788.654Scophthalmus_maximus
ENSAMXG00000004786cpsf310089.275ENSSDUG00000018498CPSF310089.275Seriola_dumerili
ENSAMXG00000004786cpsf39987.936ENSSDUG00000002828cpsf39787.936Seriola_dumerili
ENSAMXG00000004786cpsf39987.936ENSSLDG00000008469cpsf39393.167Seriola_lalandi_dorsalis
ENSAMXG00000004786cpsf310089.275ENSSLDG00000005234CPSF310089.275Seriola_lalandi_dorsalis
ENSAMXG00000004786cpsf39183.074ENSSARG00000005186CPSF39085.009Sorex_araneus
ENSAMXG00000004786cpsf39685.373ENSSPUG00000015525CPSF39785.373Sphenodon_punctatus
ENSAMXG00000004786cpsf310089.275ENSSPAG00000002906CPSF310089.275Stegastes_partitus
ENSAMXG00000004786cpsf39987.209ENSSPAG00000018579cpsf39987.209Stegastes_partitus
ENSAMXG00000004786cpsf39888.382ENSSSCG00000020799CPSF39988.382Sus_scrofa
ENSAMXG00000004786cpsf39888.088ENSTGUG00000013016CPSF39988.088Taeniopygia_guttata
ENSAMXG00000004786cpsf36374.687ENSTRUG00000013905CPSF310079.310Takifugu_rubripes
ENSAMXG00000004786cpsf39986.192ENSTRUG00000007030cpsf39886.192Takifugu_rubripes
ENSAMXG00000004786cpsf38491.713ENSTBEG00000002707CPSF38491.713Tupaia_belangeri
ENSAMXG00000004786cpsf38774.696ENSTTRG00000000861CPSF38774.696Tursiops_truncatus
ENSAMXG00000004786cpsf39588.991ENSUAMG00000007535CPSF39488.991Ursus_americanus
ENSAMXG00000004786cpsf39985.533ENSUMAG00000003676CPSF39987.926Ursus_maritimus
ENSAMXG00000004786cpsf39287.539ENSVPAG00000008041CPSF310087.539Vicugna_pacos
ENSAMXG00000004786cpsf39888.382ENSVVUG00000002194CPSF39988.382Vulpes_vulpes
ENSAMXG00000004786cpsf39986.067ENSXETG00000008263cpsf39986.067Xenopus_tropicalis
ENSAMXG00000004786cpsf35878.763ENSXCOG00000000957-8780.645Xiphophorus_couchianus
ENSAMXG00000004786cpsf39986.502ENSXCOG00000019695cpsf39986.502Xiphophorus_couchianus
ENSAMXG00000004786cpsf310086.232ENSXMAG00000009784cpsf310086.232Xiphophorus_maculatus
ENSAMXG00000004786cpsf310088.986ENSXMAG00000027291CPSF310088.986Xiphophorus_maculatus

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