EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000004941 (Gene tree)
Gene ID: 103044240
Gene Symbol: rbck1
Alias: zgc:91964
Full Name: RANBP2-type and C3HC4-type zinc finger containing 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 35383 bases
Position: chrAPWO02002089.1:128102-163484
Accession: 103044240
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000005065	zf-RanBP	PF00641.18	2.1e-06	1	1
ENSAMXP00000032680	zf-RanBP	PF00641.18	2.2e-06	1	1
ENSAMXP00000036662	zf-RanBP	PF00641.18	2.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000005065	-	3271	XM_022664048	ENSAMXP00000005065	517 (aa)	XP_022519769	W5KBV4
ENSAMXT00000038229	-	3362	-	ENSAMXP00000032680	533 (aa)	-	-
ENSAMXT00000049624	-	3353	-	ENSAMXP00000036662	547 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000004941's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex04217	Necroptosis	KEGG
amex04621	NOD-like receptor signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000004941's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000004941	rbck1	89	60.317	ENSAMXG00000021016	shrprbck1r	76	43.548

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000004941	rbck1	98	58.301	ENSACLG00000020380	rbck1	98	58.447	Astatotilapia_calliptera
ENSAMXG00000004941	rbck1	98	58.708	ENSCVAG00000002649	rbck1	98	58.708	Cyprinodon_variegatus
ENSAMXG00000004941	rbck1	98	66.405	ENSELUG00000022786	rbck1	96	66.536	Esox_lucius
ENSAMXG00000004941	rbck1	98	61.765	ENSFHEG00000016918	rbck1	98	62.931	Fundulus_heteroclitus
ENSAMXG00000004941	rbck1	98	58.880	ENSHBUG00000008208	rbck1	98	58.835	Haplochromis_burtoni
ENSAMXG00000004941	rbck1	98	58.687	ENSMZEG00005005317	rbck1	98	58.641	Maylandia_zebra
ENSAMXG00000004941	rbck1	91	52.058	ENSNBRG00000006179	rbck1	99	52.174	Neolamprologus_brichardi
ENSAMXG00000004941	rbck1	98	58.835	ENSONIG00000006803	rbck1	99	58.984	Oreochromis_niloticus
ENSAMXG00000004941	rbck1	97	59.259	ENSPNYG00000012666	rbck1	99	58.984	Pundamilia_nyererei
ENSAMXG00000004941	rbck1	98	57.306	ENSSDUG00000023631	rbck1	98	58.077	Seriola_dumerili
ENSAMXG00000004941	rbck1	98	58.189	ENSSLDG00000008305	rbck1	98	58.189	Seriola_lalandi_dorsalis
ENSAMXG00000004941	rbck1	98	61.850	ENSSPAG00000009432	rbck1	99	61.464	Stegastes_partitus