EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000005132 (Gene tree)
Gene ID: 103021593
Gene Symbol: raver1
Alias: zgc:112236
Full Name: ribonucleoprotein%2C PTB binding 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 31176 bases
Position: chrAPWO02000086.1:1010385-1041560
Accession: 103021593
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000005265	RRM_1	PF00076.22	1.2e-28	1	2
ENSAMXP00000005265	RRM_1	PF00076.22	1.2e-28	2	2
ENSAMXP00000050451	RRM_1	PF00076.22	1.4e-28	1	2
ENSAMXP00000050451	RRM_1	PF00076.22	1.4e-28	2	2
ENSAMXP00000049779	RRM_1	PF00076.22	1.6e-28	1	2
ENSAMXP00000049779	RRM_1	PF00076.22	1.6e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000034668	-	6247	XM_022667182	ENSAMXP00000049779	744 (aa)	XP_022522903	-
ENSAMXT00000051168	-	6175	XM_022667180	ENSAMXP00000050451	720 (aa)	XP_022522901	UPI000BBDD25E
ENSAMXT00000005265	-	2061	-	ENSAMXP00000005265	686 (aa)	-	W5KCF4

Gene Model

Click here to download ENSAMXG00000005132's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000005132's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000005132	raver1	84	60.465	ENSAMXG00000010570	raver2	84	60.465

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000005132	raver1	96	51.425	ENSG00000161847	RAVER1	99	51.333	Homo_sapiens
ENSAMXG00000005132	raver1	92	70.118	ENSAPOG00000017267	raver1	83	71.111	Acanthochromis_polyacanthus
ENSAMXG00000005132	raver1	84	84.906	ENSAMEG00000011738	RAVER1	78	78.333	Ailuropoda_melanoleuca
ENSAMXG00000005132	raver1	97	64.979	ENSAOCG00000005128	raver1	94	67.448	Amphiprion_ocellaris
ENSAMXG00000005132	raver1	98	65.082	ENSAPEG00000010854	raver1	98	67.534	Amphiprion_percula
ENSAMXG00000005132	raver1	93	69.706	ENSATEG00000021004	raver1	91	69.118	Anabas_testudineus
ENSAMXG00000005132	raver1	82	49.287	ENSACAG00000008386	-	75	54.649	Anolis_carolinensis
ENSAMXG00000005132	raver1	84	84.906	ENSANAG00000028226	RAVER1	77	78.333	Aotus_nancymaae
ENSAMXG00000005132	raver1	100	66.528	ENSACLG00000018492	raver1	97	67.143	Astatotilapia_calliptera
ENSAMXG00000005132	raver1	83	84.906	ENSBTAG00000015721	RAVER1	82	78.333	Bos_taurus
ENSAMXG00000005132	raver1	75	56.239	ENSCJAG00000005671	RAVER1	97	51.265	Callithrix_jacchus
ENSAMXG00000005132	raver1	72	55.780	ENSCAFG00000017861	RAVER1	97	50.970	Canis_familiaris
ENSAMXG00000005132	raver1	72	55.780	ENSCAFG00020024449	RAVER1	99	50.970	Canis_lupus_dingo
ENSAMXG00000005132	raver1	86	85.714	ENSCHIG00000006718	RAVER1	79	85.714	Capra_hircus
ENSAMXG00000005132	raver1	57	84.906	ENSTSYG00000027107	RAVER1	62	78.333	Carlito_syrichta
ENSAMXG00000005132	raver1	73	84.906	ENSCAPG00000002269	RAVER1	77	78.333	Cavia_aperea
ENSAMXG00000005132	raver1	79	84.906	ENSCPOG00000001008	RAVER1	78	78.333	Cavia_porcellus
ENSAMXG00000005132	raver1	89	84.906	ENSCCAG00000031723	RAVER1	76	84.000	Cebus_capucinus
ENSAMXG00000005132	raver1	83	87.500	ENSCATG00000043863	RAVER1	75	87.500	Cercocebus_atys
ENSAMXG00000005132	raver1	93	51.366	ENSCLAG00000009336	RAVER1	80	58.025	Chinchilla_lanigera
ENSAMXG00000005132	raver1	85	84.906	ENSCSAG00000007317	RAVER1	67	78.333	Chlorocebus_sabaeus
ENSAMXG00000005132	raver1	99	52.196	ENSCPBG00000005349	-	96	52.603	Chrysemys_picta_bellii
ENSAMXG00000005132	raver1	83	87.500	ENSCANG00000008337	RAVER1	75	87.500	Colobus_angolensis_palliatus
ENSAMXG00000005132	raver1	81	75.000	ENSCGRG00001013260	-	79	80.000	Cricetulus_griseus_chok1gshd
ENSAMXG00000005132	raver1	81	75.000	ENSCGRG00000015138	-	79	80.000	Cricetulus_griseus_crigri
ENSAMXG00000005132	raver1	96	65.021	ENSCSEG00000021092	raver1	94	65.726	Cynoglossus_semilaevis
ENSAMXG00000005132	raver1	100	62.533	ENSCVAG00000013971	raver1	97	63.512	Cyprinodon_variegatus
ENSAMXG00000005132	raver1	98	74.211	ENSDARG00000052617	raver1	98	73.626	Danio_rerio
ENSAMXG00000005132	raver1	55	83.019	ENSDNOG00000035742	-	57	76.667	Dasypus_novemcinctus
ENSAMXG00000005132	raver1	85	72.222	ENSDORG00000010106	-	78	78.333	Dipodomys_ordii
ENSAMXG00000005132	raver1	57	66.751	ENSEASG00005010544	-	71	66.327	Equus_asinus_asinus
ENSAMXG00000005132	raver1	80	84.906	ENSECAG00000024966	RAVER1	78	78.333	Equus_caballus
ENSAMXG00000005132	raver1	99	67.150	ENSELUG00000023287	raver1	98	67.639	Esox_lucius
ENSAMXG00000005132	raver1	84	84.906	ENSFCAG00000009435	RAVER1	78	78.333	Felis_catus
ENSAMXG00000005132	raver1	78	84.906	ENSFDAG00000015113	RAVER1	77	78.333	Fukomys_damarensis
ENSAMXG00000005132	raver1	95	61.591	ENSGMOG00000003649	raver1	99	61.180	Gadus_morhua
ENSAMXG00000005132	raver1	70	40.816	ENSGALG00000050608	-	55	39.924	Gallus_gallus
ENSAMXG00000005132	raver1	100	64.048	ENSGAFG00000015944	raver1	97	65.437	Gambusia_affinis
ENSAMXG00000005132	raver1	93	59.167	ENSGACG00000013818	raver1	72	91.837	Gasterosteus_aculeatus
ENSAMXG00000005132	raver1	91	60.134	ENSGAGG00000011748	-	80	90.000	Gopherus_agassizii
ENSAMXG00000005132	raver1	96	51.425	ENSGGOG00000006015	RAVER1	97	51.333	Gorilla_gorilla
ENSAMXG00000005132	raver1	100	66.343	ENSHBUG00000021210	raver1	97	66.761	Haplochromis_burtoni
ENSAMXG00000005132	raver1	81	73.611	ENSHGLG00000015460	RAVER1	77	78.333	Heterocephalus_glaber_female
ENSAMXG00000005132	raver1	81	73.611	ENSHGLG00100000812	RAVER1	77	78.333	Heterocephalus_glaber_male
ENSAMXG00000005132	raver1	100	60.992	ENSHCOG00000000449	raver1	95	62.207	Hippocampus_comes
ENSAMXG00000005132	raver1	98	74.171	ENSIPUG00000013153	raver1	98	74.309	Ictalurus_punctatus
ENSAMXG00000005132	raver1	87	73.611	ENSSTOG00000003241	RAVER1	80	78.333	Ictidomys_tridecemlineatus
ENSAMXG00000005132	raver1	87	75.000	ENSJJAG00000018219	-	79	80.000	Jaculus_jaculus
ENSAMXG00000005132	raver1	100	64.926	ENSKMAG00000017355	raver1	90	68.796	Kryptolebias_marmoratus
ENSAMXG00000005132	raver1	92	64.834	ENSLBEG00000008268	raver1	93	65.030	Labrus_bergylta
ENSAMXG00000005132	raver1	88	49.644	ENSLACG00000005809	-	80	81.667	Latimeria_chalumnae
ENSAMXG00000005132	raver1	94	61.696	ENSLOCG00000007500	raver1	94	61.134	Lepisosteus_oculatus
ENSAMXG00000005132	raver1	95	49.211	ENSLAFG00000003664	-	99	50.738	Loxodonta_africana
ENSAMXG00000005132	raver1	86	56.343	ENSMFAG00000037977	RAVER1	77	78.333	Macaca_fascicularis
ENSAMXG00000005132	raver1	86	56.343	ENSMMUG00000014897	RAVER1	77	78.333	Macaca_mulatta
ENSAMXG00000005132	raver1	83	87.500	ENSMNEG00000028390	RAVER1	74	87.500	Macaca_nemestrina
ENSAMXG00000005132	raver1	83	87.500	ENSMLEG00000041959	RAVER1	75	87.500	Mandrillus_leucophaeus
ENSAMXG00000005132	raver1	98	67.534	ENSMAMG00000012059	raver1	98	68.219	Mastacembelus_armatus
ENSAMXG00000005132	raver1	100	65.422	ENSMZEG00005019002	raver1	98	66.712	Maylandia_zebra
ENSAMXG00000005132	raver1	81	75.000	ENSMAUG00000017948	-	76	80.000	Mesocricetus_auratus
ENSAMXG00000005132	raver1	97	50.875	ENSMICG00000010326	RAVER1	99	52.624	Microcebus_murinus
ENSAMXG00000005132	raver1	81	75.000	ENSMOCG00000015553	-	79	80.000	Microtus_ochrogaster
ENSAMXG00000005132	raver1	93	70.044	ENSMMOG00000012093	raver1	91	68.778	Mola_mola
ENSAMXG00000005132	raver1	94	50.850	ENSMODG00000005584	-	88	50.568	Monodelphis_domestica
ENSAMXG00000005132	raver1	100	65.020	ENSMALG00000016569	raver1	98	64.979	Monopterus_albus
ENSAMXG00000005132	raver1	81	75.000	MGP_CAROLIEiJ_G0031860	-	77	80.000	Mus_caroli
ENSAMXG00000005132	raver1	81	75.000	ENSMUSG00000010205	Raver1	77	80.000	Mus_musculus
ENSAMXG00000005132	raver1	81	75.000	MGP_PahariEiJ_G0014726	-	77	80.000	Mus_pahari
ENSAMXG00000005132	raver1	81	75.000	MGP_SPRETEiJ_G0032984	-	77	80.000	Mus_spretus
ENSAMXG00000005132	raver1	78	84.906	ENSMPUG00000006712	RAVER1	74	78.333	Mustela_putorius_furo
ENSAMXG00000005132	raver1	97	50.609	ENSMLUG00000012328	RAVER1	81	78.333	Myotis_lucifugus
ENSAMXG00000005132	raver1	81	72.222	ENSNGAG00000001260	-	80	78.333	Nannospalax_galili
ENSAMXG00000005132	raver1	100	59.574	ENSNBRG00000010139	raver1	97	60.218	Neolamprologus_brichardi
ENSAMXG00000005132	raver1	75	56.900	ENSNLEG00000012181	RAVER1	97	51.544	Nomascus_leucogenys
ENSAMXG00000005132	raver1	87	50.585	ENSMEUG00000003281	-	77	80.000	Notamacropus_eugenii
ENSAMXG00000005132	raver1	64	88.000	ENSODEG00000016260	RAVER1	81	66.667	Octodon_degus
ENSAMXG00000005132	raver1	93	68.398	ENSONIG00000001559	raver1	99	68.499	Oreochromis_niloticus
ENSAMXG00000005132	raver1	86	73.611	ENSOCUG00000020918	RAVER1	80	78.333	Oryctolagus_cuniculus
ENSAMXG00000005132	raver1	100	63.600	ENSORLG00000005458	raver1	93	66.476	Oryzias_latipes
ENSAMXG00000005132	raver1	100	64.037	ENSORLG00020004392	raver1	93	66.619	Oryzias_latipes_hni
ENSAMXG00000005132	raver1	100	63.600	ENSORLG00015017222	raver1	93	66.619	Oryzias_latipes_hsok
ENSAMXG00000005132	raver1	100	62.571	ENSOMEG00000023956	raver1	92	65.350	Oryzias_melastigma
ENSAMXG00000005132	raver1	87	78.333	ENSOGAG00000011071	RAVER1	75	78.333	Otolemur_garnettii
ENSAMXG00000005132	raver1	86	84.906	ENSOARG00000015886	RAVER1	78	78.333	Ovis_aries
ENSAMXG00000005132	raver1	96	51.425	ENSPPAG00000002611	RAVER1	97	51.333	Pan_paniscus
ENSAMXG00000005132	raver1	76	53.286	ENSPPRG00000009912	RAVER1	97	49.673	Panthera_pardus
ENSAMXG00000005132	raver1	96	51.425	ENSPTRG00000010466	RAVER1	97	51.333	Pan_troglodytes
ENSAMXG00000005132	raver1	83	87.500	ENSPANG00000004122	RAVER1	75	87.500	Papio_anubis
ENSAMXG00000005132	raver1	81	73.611	ENSPEMG00000016411	-	76	78.333	Peromyscus_maniculatus_bairdii
ENSAMXG00000005132	raver1	97	51.928	ENSPCIG00000018695	-	99	51.528	Phascolarctos_cinereus
ENSAMXG00000005132	raver1	100	63.212	ENSPFOG00000007016	raver1	97	64.542	Poecilia_formosa
ENSAMXG00000005132	raver1	100	62.158	ENSPLAG00000020793	raver1	97	64.095	Poecilia_latipinna
ENSAMXG00000005132	raver1	100	63.648	ENSPMEG00000011220	raver1	97	64.891	Poecilia_mexicana
ENSAMXG00000005132	raver1	100	64.045	ENSPREG00000006864	raver1	97	66.089	Poecilia_reticulata
ENSAMXG00000005132	raver1	87	79.661	ENSPPYG00000010514	RAVER1	68	78.333	Pongo_abelii
ENSAMXG00000005132	raver1	86	84.906	ENSPCOG00000026605	RAVER1	78	78.333	Propithecus_coquereli
ENSAMXG00000005132	raver1	82	84.906	ENSPVAG00000003689	RAVER1	81	78.333	Pteropus_vampyrus
ENSAMXG00000005132	raver1	100	64.835	ENSPNYG00000013284	raver1	97	65.211	Pundamilia_nyererei
ENSAMXG00000005132	raver1	98	80.384	ENSPNAG00000015476	raver1	98	79.424	Pygocentrus_nattereri
ENSAMXG00000005132	raver1	93	50.472	ENSRNOG00000020710	Raver1	76	80.000	Rattus_norvegicus
ENSAMXG00000005132	raver1	85	79.661	ENSRBIG00000034702	RAVER1	79	78.333	Rhinopithecus_bieti
ENSAMXG00000005132	raver1	96	52.078	ENSRROG00000031186	RAVER1	97	51.973	Rhinopithecus_roxellana
ENSAMXG00000005132	raver1	100	50.066	ENSSBOG00000023423	RAVER1	96	52.493	Saimiri_boliviensis_boliviensis
ENSAMXG00000005132	raver1	89	51.627	ENSSHAG00000008181	-	91	51.484	Sarcophilus_harrisii
ENSAMXG00000005132	raver1	93	71.512	ENSSMAG00000004546	raver1	90	71.176	Scophthalmus_maximus
ENSAMXG00000005132	raver1	99	67.806	ENSSDUG00000021063	raver1	98	69.098	Seriola_dumerili
ENSAMXG00000005132	raver1	99	66.798	ENSSLDG00000014505	raver1	98	69.041	Seriola_lalandi_dorsalis
ENSAMXG00000005132	raver1	99	66.275	ENSSPAG00000000688	raver1	98	68.356	Stegastes_partitus
ENSAMXG00000005132	raver1	85	79.661	ENSSSCG00000013650	-	86	78.333	Sus_scrofa
ENSAMXG00000005132	raver1	93	66.129	ENSTRUG00000025641	raver1	91	65.147	Takifugu_rubripes
ENSAMXG00000005132	raver1	86	84.906	ENSTTRG00000009552	RAVER1	81	78.333	Tursiops_truncatus
ENSAMXG00000005132	raver1	84	84.906	ENSUAMG00000020385	RAVER1	78	78.333	Ursus_americanus
ENSAMXG00000005132	raver1	72	55.780	ENSVVUG00000028976	RAVER1	97	50.970	Vulpes_vulpes
ENSAMXG00000005132	raver1	100	50.539	ENSXETG00000011622	raver1	96	50.423	Xenopus_tropicalis
ENSAMXG00000005132	raver1	100	64.714	ENSXCOG00000016368	raver1	97	66.120	Xiphophorus_couchianus
ENSAMXG00000005132	raver1	100	64.628	ENSXMAG00000000217	raver1	97	65.984	Xiphophorus_maculatus