EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000005361 (Gene tree)
Gene ID: 103033486
Gene Symbol: sbds
Alias: zgc:56700
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 4414 bases
Position: chr17:5222083-5226496
Accession: 103033486
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000005495	SBDS	PF01172.18	6.3e-34	1	1
ENSAMXP00000005495	SBDS_C	PF09377.10	8.1e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000005495	-	1012	XM_022678747	ENSAMXP00000005495	250 (aa)	XP_022534468	W5KD34

Gene Model

Click here to download ENSAMXG00000005361's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000005361's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000005361	sbds	100	84.400	ENSG00000126524	SBDS	100	84.400	Homo_sapiens
ENSAMXG00000005361	sbds	99	91.165	ENSAPOG00000014285	sbds	100	91.165	Acanthochromis_polyacanthus
ENSAMXG00000005361	sbds	100	84.800	ENSAMEG00000018167	SBDS	100	84.800	Ailuropoda_melanoleuca
ENSAMXG00000005361	sbds	99	89.286	ENSACIG00000007308	sbds	100	89.286	Amphilophus_citrinellus
ENSAMXG00000005361	sbds	99	90.361	ENSAOCG00000016770	sbds	100	90.361	Amphiprion_ocellaris
ENSAMXG00000005361	sbds	99	90.763	ENSAPEG00000015897	sbds	100	90.763	Amphiprion_percula
ENSAMXG00000005361	sbds	99	89.960	ENSATEG00000006901	sbds	100	89.960	Anabas_testudineus
ENSAMXG00000005361	sbds	92	79.221	ENSANAG00000024342	-	97	79.221	Aotus_nancymaae
ENSAMXG00000005361	sbds	83	84.058	ENSANAG00000037501	-	100	84.058	Aotus_nancymaae
ENSAMXG00000005361	sbds	99	91.165	ENSACLG00000018750	sbds	100	91.165	Astatotilapia_calliptera
ENSAMXG00000005361	sbds	100	84.400	ENSBTAG00000004051	SBDS	100	84.400	Bos_taurus
ENSAMXG00000005361	sbds	98	58.130	WBGene00021063	sbds-1	97	58.130	Caenorhabditis_elegans
ENSAMXG00000005361	sbds	100	84.400	ENSCJAG00000041007	SBDS	100	84.400	Callithrix_jacchus
ENSAMXG00000005361	sbds	100	83.730	ENSCAFG00000010797	SBDS	100	83.730	Canis_familiaris
ENSAMXG00000005361	sbds	100	84.800	ENSCAFG00020005357	SBDS	100	84.800	Canis_lupus_dingo
ENSAMXG00000005361	sbds	100	84.400	ENSCHIG00000026854	SBDS	100	84.400	Capra_hircus
ENSAMXG00000005361	sbds	100	84.400	ENSTSYG00000033822	SBDS	100	84.400	Carlito_syrichta
ENSAMXG00000005361	sbds	66	84.756	ENSCAPG00000006634	SBDS	100	84.756	Cavia_aperea
ENSAMXG00000005361	sbds	100	85.200	ENSCPOG00000036143	SBDS	100	85.200	Cavia_porcellus
ENSAMXG00000005361	sbds	100	84.400	ENSCCAG00000020671	SBDS	100	84.400	Cebus_capucinus
ENSAMXG00000005361	sbds	100	84.400	ENSCATG00000039026	SBDS	100	84.400	Cercocebus_atys
ENSAMXG00000005361	sbds	100	85.600	ENSCLAG00000005721	-	100	85.600	Chinchilla_lanigera
ENSAMXG00000005361	sbds	99	60.484	ENSCLAG00000002113	-	99	60.484	Chinchilla_lanigera
ENSAMXG00000005361	sbds	100	84.400	ENSCSAG00000018275	SBDS	100	84.400	Chlorocebus_sabaeus
ENSAMXG00000005361	sbds	100	79.600	ENSCHOG00000003795	SBDS	100	79.600	Choloepus_hoffmanni
ENSAMXG00000005361	sbds	100	87.200	ENSCPBG00000014893	SBDS	100	87.200	Chrysemys_picta_bellii
ENSAMXG00000005361	sbds	99	68.952	ENSCSAVG00000011811	-	99	68.952	Ciona_savignyi
ENSAMXG00000005361	sbds	100	84.000	ENSCANG00000032368	SBDS	100	84.000	Colobus_angolensis_palliatus
ENSAMXG00000005361	sbds	66	83.537	ENSCGRG00001019886	Sbds	100	83.537	Cricetulus_griseus_chok1gshd
ENSAMXG00000005361	sbds	83	84.058	ENSCGRG00000009211	Sbds	100	84.058	Cricetulus_griseus_crigri
ENSAMXG00000005361	sbds	99	89.157	ENSCSEG00000005798	sbds	100	89.157	Cynoglossus_semilaevis
ENSAMXG00000005361	sbds	99	87.149	ENSCVAG00000001053	sbds	100	87.149	Cyprinodon_variegatus
ENSAMXG00000005361	sbds	100	91.200	ENSDARG00000027803	sbds	100	91.200	Danio_rerio
ENSAMXG00000005361	sbds	100	84.400	ENSDNOG00000041174	SBDS	100	84.400	Dasypus_novemcinctus
ENSAMXG00000005361	sbds	100	85.600	ENSDORG00000026218	Sbds	100	85.600	Dipodomys_ordii
ENSAMXG00000005361	sbds	90	60.088	FBgn0035714	CG8549	98	59.919	Drosophila_melanogaster
ENSAMXG00000005361	sbds	93	59.227	ENSEBUG00000015780	sbds	100	59.227	Eptatretus_burgeri
ENSAMXG00000005361	sbds	100	84.400	ENSEASG00005008821	SBDS	100	84.400	Equus_asinus_asinus
ENSAMXG00000005361	sbds	100	84.400	ENSECAG00000008202	SBDS	100	84.400	Equus_caballus
ENSAMXG00000005361	sbds	83	66.346	ENSEEUG00000004768	SBDS	100	66.346	Erinaceus_europaeus
ENSAMXG00000005361	sbds	100	88.800	ENSELUG00000008382	sbds	100	88.800	Esox_lucius
ENSAMXG00000005361	sbds	100	84.400	ENSFCAG00000022142	SBDS	100	84.400	Felis_catus
ENSAMXG00000005361	sbds	100	88.000	ENSFALG00000013808	SBDS	100	88.000	Ficedula_albicollis
ENSAMXG00000005361	sbds	100	85.200	ENSFDAG00000018947	-	100	85.200	Fukomys_damarensis
ENSAMXG00000005361	sbds	99	84.337	ENSFHEG00000000708	sbds	100	84.337	Fundulus_heteroclitus
ENSAMXG00000005361	sbds	100	87.600	ENSGMOG00000018356	sbds	99	87.600	Gadus_morhua
ENSAMXG00000005361	sbds	100	86.400	ENSGALG00000027989	SBDS	100	86.400	Gallus_gallus
ENSAMXG00000005361	sbds	92	83.043	ENSGAFG00000014204	sbds	100	83.043	Gambusia_affinis
ENSAMXG00000005361	sbds	99	88.353	ENSGACG00000012697	sbds	100	88.353	Gasterosteus_aculeatus
ENSAMXG00000005361	sbds	86	87.850	ENSGAGG00000022402	SBDS	100	87.850	Gopherus_agassizii
ENSAMXG00000005361	sbds	96	66.390	ENSGGOG00000040023	-	92	66.390	Gorilla_gorilla
ENSAMXG00000005361	sbds	99	91.165	ENSHBUG00000002660	sbds	100	91.165	Haplochromis_burtoni
ENSAMXG00000005361	sbds	100	84.000	ENSHGLG00000009671	SBDS	100	84.000	Heterocephalus_glaber_female
ENSAMXG00000005361	sbds	100	84.000	ENSHGLG00100011332	SBDS	100	84.000	Heterocephalus_glaber_male
ENSAMXG00000005361	sbds	99	85.542	ENSHCOG00000018606	sbds	100	85.542	Hippocampus_comes
ENSAMXG00000005361	sbds	100	92.000	ENSIPUG00000006536	sbds	100	92.000	Ictalurus_punctatus
ENSAMXG00000005361	sbds	100	82.800	ENSJJAG00000012033	-	100	82.800	Jaculus_jaculus
ENSAMXG00000005361	sbds	100	60.870	ENSJJAG00000003934	-	100	60.870	Jaculus_jaculus
ENSAMXG00000005361	sbds	99	88.755	ENSKMAG00000018542	sbds	100	88.755	Kryptolebias_marmoratus
ENSAMXG00000005361	sbds	99	87.550	ENSLBEG00000016687	sbds	100	87.550	Labrus_bergylta
ENSAMXG00000005361	sbds	100	74.409	ENSLACG00000018916	SBDS	100	74.409	Latimeria_chalumnae
ENSAMXG00000005361	sbds	100	91.600	ENSLOCG00000004073	sbds	100	91.600	Lepisosteus_oculatus
ENSAMXG00000005361	sbds	100	84.800	ENSLAFG00000008763	SBDS	100	84.800	Loxodonta_africana
ENSAMXG00000005361	sbds	100	84.400	ENSMFAG00000032620	SBDS	100	84.400	Macaca_fascicularis
ENSAMXG00000005361	sbds	100	84.400	ENSMMUG00000045653	SBDS	100	84.400	Macaca_mulatta
ENSAMXG00000005361	sbds	100	84.400	ENSMNEG00000031523	SBDS	100	84.400	Macaca_nemestrina
ENSAMXG00000005361	sbds	100	67.323	ENSMLEG00000036826	SBDS	100	67.323	Mandrillus_leucophaeus
ENSAMXG00000005361	sbds	99	89.558	ENSMAMG00000016062	sbds	100	89.558	Mastacembelus_armatus
ENSAMXG00000005361	sbds	99	91.165	ENSMZEG00005024385	sbds	100	91.165	Maylandia_zebra
ENSAMXG00000005361	sbds	100	86.400	ENSMGAG00000002119	SBDS	100	86.400	Meleagris_gallopavo
ENSAMXG00000005361	sbds	99	69.076	ENSMAUG00000022214	-	100	69.076	Mesocricetus_auratus
ENSAMXG00000005361	sbds	100	84.400	ENSMICG00000014366	SBDS	100	84.400	Microcebus_murinus
ENSAMXG00000005361	sbds	100	84.800	ENSMOCG00000011739	Sbds	100	84.800	Microtus_ochrogaster
ENSAMXG00000005361	sbds	99	79.600	ENSMMOG00000005061	sbds	100	79.600	Mola_mola
ENSAMXG00000005361	sbds	100	85.600	ENSMODG00000006644	SBDS	100	85.600	Monodelphis_domestica
ENSAMXG00000005361	sbds	99	86.747	ENSMALG00000010219	sbds	100	86.747	Monopterus_albus
ENSAMXG00000005361	sbds	100	85.600	MGP_CAROLIEiJ_G0027800	Sbds	98	90.476	Mus_caroli
ENSAMXG00000005361	sbds	100	85.200	ENSMUSG00000025337	Sbds	98	90.476	Mus_musculus
ENSAMXG00000005361	sbds	100	85.600	MGP_PahariEiJ_G0024384	Sbds	98	90.476	Mus_pahari
ENSAMXG00000005361	sbds	100	85.200	MGP_SPRETEiJ_G0028798	Sbds	98	90.476	Mus_spretus
ENSAMXG00000005361	sbds	67	85.714	ENSMPUG00000016192	SBDS	97	85.714	Mustela_putorius_furo
ENSAMXG00000005361	sbds	73	81.868	ENSMLUG00000013575	SBDS	100	81.868	Myotis_lucifugus
ENSAMXG00000005361	sbds	100	85.600	ENSNGAG00000012093	Sbds	100	85.600	Nannospalax_galili
ENSAMXG00000005361	sbds	99	91.165	ENSNBRG00000017027	sbds	100	91.165	Neolamprologus_brichardi
ENSAMXG00000005361	sbds	100	84.400	ENSNLEG00000013288	SBDS	100	84.400	Nomascus_leucogenys
ENSAMXG00000005361	sbds	100	84.400	ENSOPRG00000008721	SBDS	100	84.400	Ochotona_princeps
ENSAMXG00000005361	sbds	99	67.068	ENSODEG00000001116	-	99	67.068	Octodon_degus
ENSAMXG00000005361	sbds	100	76.800	ENSODEG00000019253	-	84	76.800	Octodon_degus
ENSAMXG00000005361	sbds	99	65.863	ENSODEG00000000137	-	85	68.400	Octodon_degus
ENSAMXG00000005361	sbds	99	90.361	ENSONIG00000005874	sbds	100	90.361	Oreochromis_niloticus
ENSAMXG00000005361	sbds	83	83.092	ENSOANG00000007674	-	100	83.092	Ornithorhynchus_anatinus
ENSAMXG00000005361	sbds	100	85.600	ENSOCUG00000003170	SBDS	100	85.600	Oryctolagus_cuniculus
ENSAMXG00000005361	sbds	99	85.944	ENSORLG00000023489	sbds	100	85.944	Oryzias_latipes
ENSAMXG00000005361	sbds	99	85.944	ENSORLG00020019282	sbds	100	85.944	Oryzias_latipes_hni
ENSAMXG00000005361	sbds	99	85.944	ENSORLG00015008005	sbds	100	85.944	Oryzias_latipes_hsok
ENSAMXG00000005361	sbds	99	86.747	ENSOMEG00000022747	sbds	100	86.747	Oryzias_melastigma
ENSAMXG00000005361	sbds	100	84.800	ENSOGAG00000009011	-	100	84.800	Otolemur_garnettii
ENSAMXG00000005361	sbds	100	72.000	ENSOGAG00000015036	-	100	72.000	Otolemur_garnettii
ENSAMXG00000005361	sbds	100	84.400	ENSOARG00000010609	SBDS	100	84.400	Ovis_aries
ENSAMXG00000005361	sbds	100	83.600	ENSPPAG00000043889	-	100	83.600	Pan_paniscus
ENSAMXG00000005361	sbds	100	84.400	ENSPPRG00000002307	SBDS	100	84.400	Panthera_pardus
ENSAMXG00000005361	sbds	100	84.400	ENSPTIG00000021308	SBDS	100	84.400	Panthera_tigris_altaica
ENSAMXG00000005361	sbds	100	84.400	ENSPTRG00000019254	SBDS	100	84.400	Pan_troglodytes
ENSAMXG00000005361	sbds	100	71.200	ENSPTRG00000047744	-	100	71.200	Pan_troglodytes
ENSAMXG00000005361	sbds	100	71.200	ENSPTRG00000050835	-	100	71.200	Pan_troglodytes
ENSAMXG00000005361	sbds	87	81.567	ENSPTRG00000048174	-	96	81.567	Pan_troglodytes
ENSAMXG00000005361	sbds	100	84.400	ENSPANG00000004078	SBDS	100	84.400	Papio_anubis
ENSAMXG00000005361	sbds	100	94.000	ENSPKIG00000006489	sbds	100	94.000	Paramormyrops_kingsleyae
ENSAMXG00000005361	sbds	83	87.019	ENSPSIG00000014603	SBDS	100	87.019	Pelodiscus_sinensis
ENSAMXG00000005361	sbds	99	89.157	ENSPMGG00000004246	sbds	100	89.157	Periophthalmus_magnuspinnatus
ENSAMXG00000005361	sbds	100	85.600	ENSPEMG00000008728	Sbds	100	85.600	Peromyscus_maniculatus_bairdii
ENSAMXG00000005361	sbds	100	86.400	ENSPCIG00000029718	SBDS	100	86.400	Phascolarctos_cinereus
ENSAMXG00000005361	sbds	99	85.944	ENSPFOG00000015837	sbds	100	85.944	Poecilia_formosa
ENSAMXG00000005361	sbds	99	86.345	ENSPLAG00000003641	sbds	100	86.345	Poecilia_latipinna
ENSAMXG00000005361	sbds	99	85.944	ENSPMEG00000019483	sbds	100	85.944	Poecilia_mexicana
ENSAMXG00000005361	sbds	99	85.944	ENSPREG00000018758	sbds	100	85.944	Poecilia_reticulata
ENSAMXG00000005361	sbds	100	84.400	ENSPPYG00000017513	SBDS	100	84.400	Pongo_abelii
ENSAMXG00000005361	sbds	100	84.000	ENSPCOG00000021098	SBDS	100	84.000	Propithecus_coquereli
ENSAMXG00000005361	sbds	100	84.800	ENSPVAG00000009369	SBDS	100	84.800	Pteropus_vampyrus
ENSAMXG00000005361	sbds	99	90.763	ENSPNYG00000022403	sbds	100	90.763	Pundamilia_nyererei
ENSAMXG00000005361	sbds	100	94.000	ENSPNAG00000001120	sbds	100	94.000	Pygocentrus_nattereri
ENSAMXG00000005361	sbds	100	85.600	ENSRNOG00000000888	Sbds	100	85.600	Rattus_norvegicus
ENSAMXG00000005361	sbds	100	84.400	ENSRBIG00000035557	SBDS	100	84.400	Rhinopithecus_bieti
ENSAMXG00000005361	sbds	100	84.400	ENSRROG00000040842	-	100	84.400	Rhinopithecus_roxellana
ENSAMXG00000005361	sbds	100	68.400	ENSRROG00000041986	-	100	66.800	Rhinopithecus_roxellana
ENSAMXG00000005361	sbds	96	43.902	YLR022C	-	96	42.915	Saccharomyces_cerevisiae
ENSAMXG00000005361	sbds	93	82.328	ENSSBOG00000022460	SBDS	100	82.328	Saimiri_boliviensis_boliviensis
ENSAMXG00000005361	sbds	100	74.400	ENSSHAG00000010263	SBDS	100	74.400	Sarcophilus_harrisii
ENSAMXG00000005361	sbds	100	94.000	ENSSFOG00015001108	sbds	100	94.000	Scleropages_formosus
ENSAMXG00000005361	sbds	99	88.755	ENSSMAG00000020506	sbds	100	88.755	Scophthalmus_maximus
ENSAMXG00000005361	sbds	99	89.960	ENSSDUG00000001528	sbds	100	89.960	Seriola_dumerili
ENSAMXG00000005361	sbds	99	89.558	ENSSLDG00000003659	sbds	100	89.558	Seriola_lalandi_dorsalis
ENSAMXG00000005361	sbds	73	87.209	ENSSARG00000001899	-	73	87.209	Sorex_araneus
ENSAMXG00000005361	sbds	61	88.235	ENSSARG00000013132	-	100	88.235	Sorex_araneus
ENSAMXG00000005361	sbds	100	83.600	ENSSPUG00000002699	SBDS	100	83.600	Sphenodon_punctatus
ENSAMXG00000005361	sbds	99	90.763	ENSSPAG00000016419	sbds	100	83.600	Stegastes_partitus
ENSAMXG00000005361	sbds	100	84.400	ENSSSCG00000007732	SBDS	100	84.400	Sus_scrofa
ENSAMXG00000005361	sbds	66	88.485	ENSTGUG00000003426	SBDS	99	88.485	Taeniopygia_guttata
ENSAMXG00000005361	sbds	99	88.755	ENSTRUG00000021443	sbds	100	88.755	Takifugu_rubripes
ENSAMXG00000005361	sbds	99	89.960	ENSTNIG00000019000	sbds	100	89.960	Tetraodon_nigroviridis
ENSAMXG00000005361	sbds	83	71.154	ENSTBEG00000001178	SBDS	100	71.154	Tupaia_belangeri
ENSAMXG00000005361	sbds	100	66.400	ENSTTRG00000003921	SBDS	100	66.400	Tursiops_truncatus
ENSAMXG00000005361	sbds	100	84.800	ENSUAMG00000001326	SBDS	100	84.800	Ursus_americanus
ENSAMXG00000005361	sbds	100	84.800	ENSUMAG00000015353	SBDS	100	84.800	Ursus_maritimus
ENSAMXG00000005361	sbds	100	84.800	ENSVVUG00000016478	SBDS	100	84.800	Vulpes_vulpes
ENSAMXG00000005361	sbds	100	88.800	ENSXETG00000010093	sbds	100	88.800	Xenopus_tropicalis
ENSAMXG00000005361	sbds	99	77.912	ENSXCOG00000010639	sbds	100	77.912	Xiphophorus_couchianus
ENSAMXG00000005361	sbds	99	86.747	ENSXMAG00000006065	sbds	100	86.747	Xiphophorus_maculatus