EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000005382 (Gene tree)
Gene ID: 103044926
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 13676 bases
Position: chr6:30128535-30142210
Accession: 103044926
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000039069	PRP21_like_P	PF12230.8	3.6e-52	1	1
ENSAMXP00000005512	PRP21_like_P	PF12230.8	3.6e-52	1	1
ENSAMXP00000005512	Surp	PF01805.20	7.2e-46	1	2
ENSAMXP00000005512	Surp	PF01805.20	7.2e-46	2	2
ENSAMXP00000039069	Surp	PF01805.20	7.4e-46	1	2
ENSAMXP00000039069	Surp	PF01805.20	7.4e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000005512	-	2358	-	ENSAMXP00000005512	785 (aa)	-	W5KD51
ENSAMXT00000030931	-	4583	XM_007247101	ENSAMXP00000039069	786 (aa)	XP_007247163	UPI0003CD3975

Gene Model

Click here to download ENSAMXG00000005382's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000005382's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000005382	sf3a1	99	84.833	ENSG00000099995	SF3A1	99	83.439	Homo_sapiens
ENSAMXG00000005382	sf3a1	99	90.064	ENSAPOG00000020465	sf3a1	99	89.809	Acanthochromis_polyacanthus
ENSAMXG00000005382	sf3a1	98	84.864	ENSAMEG00000007737	SF3A1	99	83.523	Ailuropoda_melanoleuca
ENSAMXG00000005382	sf3a1	99	88.917	ENSACIG00000020672	sf3a1	99	88.662	Amphilophus_citrinellus
ENSAMXG00000005382	sf3a1	99	90.064	ENSAOCG00000003060	sf3a1	99	89.809	Amphiprion_ocellaris
ENSAMXG00000005382	sf3a1	99	89.936	ENSAPEG00000010735	sf3a1	99	89.682	Amphiprion_percula
ENSAMXG00000005382	sf3a1	98	89.610	ENSATEG00000021201	sf3a1	97	89.351	Anabas_testudineus
ENSAMXG00000005382	sf3a1	97	84.625	ENSAPLG00000009057	SF3A1	99	83.700	Anas_platyrhynchos
ENSAMXG00000005382	sf3a1	100	81.118	ENSACAG00000009415	SF3A1	99	80.497	Anolis_carolinensis
ENSAMXG00000005382	sf3a1	99	84.041	ENSANAG00000032045	SF3A1	99	83.186	Aotus_nancymaae
ENSAMXG00000005382	sf3a1	99	88.535	ENSACLG00000012622	sf3a1	99	87.898	Astatotilapia_calliptera
ENSAMXG00000005382	sf3a1	99	84.170	ENSBTAG00000003390	SF3A1	99	83.312	Bos_taurus
ENSAMXG00000005382	sf3a1	84	43.470	WBGene00004188	prp-21	59	50.000	Caenorhabditis_elegans
ENSAMXG00000005382	sf3a1	99	84.170	ENSCJAG00000010370	SF3A1	99	83.312	Callithrix_jacchus
ENSAMXG00000005382	sf3a1	99	84.170	ENSCAFG00000012559	SF3A1	99	83.312	Canis_familiaris
ENSAMXG00000005382	sf3a1	99	84.170	ENSCAFG00020000838	SF3A1	99	83.312	Canis_lupus_dingo
ENSAMXG00000005382	sf3a1	99	84.041	ENSCHIG00000018642	SF3A1	99	83.186	Capra_hircus
ENSAMXG00000005382	sf3a1	98	84.735	ENSTSYG00000004739	SF3A1	99	83.186	Carlito_syrichta
ENSAMXG00000005382	sf3a1	95	68.809	ENSCAPG00000015414	SF3A1	98	68.659	Cavia_aperea
ENSAMXG00000005382	sf3a1	99	84.685	ENSCPOG00000014589	SF3A1	99	83.609	Cavia_porcellus
ENSAMXG00000005382	sf3a1	99	84.041	ENSCCAG00000032006	SF3A1	99	83.186	Cebus_capucinus
ENSAMXG00000005382	sf3a1	99	84.299	ENSCATG00000029241	SF3A1	99	83.439	Cercocebus_atys
ENSAMXG00000005382	sf3a1	99	84.467	ENSCLAG00000006508	SF3A1	99	83.312	Chinchilla_lanigera
ENSAMXG00000005382	sf3a1	99	84.319	ENSCSAG00000009470	SF3A1	99	83.439	Chlorocebus_sabaeus
ENSAMXG00000005382	sf3a1	59	89.811	ENSCHOG00000005201	SF3A1	63	88.433	Choloepus_hoffmanni
ENSAMXG00000005382	sf3a1	100	82.719	ENSCPBG00000007595	SF3A1	99	82.084	Chrysemys_picta_bellii
ENSAMXG00000005382	sf3a1	92	63.158	ENSCSAVG00000005608	-	92	65.398	Ciona_savignyi
ENSAMXG00000005382	sf3a1	99	84.319	ENSCANG00000033564	SF3A1	99	83.439	Colobus_angolensis_palliatus
ENSAMXG00000005382	sf3a1	97	85.452	ENSCGRG00001008933	Sf3a1	99	83.312	Cricetulus_griseus_chok1gshd
ENSAMXG00000005382	sf3a1	97	85.452	ENSCGRG00000006127	Sf3a1	99	83.312	Cricetulus_griseus_crigri
ENSAMXG00000005382	sf3a1	99	88.183	ENSCSEG00000010792	sf3a1	99	87.802	Cynoglossus_semilaevis
ENSAMXG00000005382	sf3a1	99	87.150	ENSCVAG00000004560	sf3a1	99	86.514	Cyprinodon_variegatus
ENSAMXG00000005382	sf3a1	99	91.327	ENSDARG00000041887	sf3a1	99	90.561	Danio_rerio
ENSAMXG00000005382	sf3a1	98	84.884	ENSDNOG00000010629	SF3A1	98	83.525	Dasypus_novemcinctus
ENSAMXG00000005382	sf3a1	99	84.556	ENSDORG00000005613	Sf3a1	99	83.186	Dipodomys_ordii
ENSAMXG00000005382	sf3a1	85	83.857	ENSETEG00000017194	SF3A1	95	84.006	Echinops_telfairi
ENSAMXG00000005382	sf3a1	99	66.872	ENSEBUG00000001285	sf3a1	96	68.227	Eptatretus_burgeri
ENSAMXG00000005382	sf3a1	99	84.170	ENSEASG00005010254	SF3A1	99	83.312	Equus_asinus_asinus
ENSAMXG00000005382	sf3a1	99	84.170	ENSECAG00000023962	SF3A1	99	83.312	Equus_caballus
ENSAMXG00000005382	sf3a1	74	91.803	ENSEEUG00000003159	SF3A1	82	91.803	Erinaceus_europaeus
ENSAMXG00000005382	sf3a1	99	86.294	ENSELUG00000022578	sf3a1	99	86.548	Esox_lucius
ENSAMXG00000005382	sf3a1	99	84.299	ENSFCAG00000011932	SF3A1	99	83.439	Felis_catus
ENSAMXG00000005382	sf3a1	97	83.816	ENSFALG00000006944	SF3A1	97	83.791	Ficedula_albicollis
ENSAMXG00000005382	sf3a1	98	84.864	ENSFDAG00000009560	SF3A1	99	83.312	Fukomys_damarensis
ENSAMXG00000005382	sf3a1	99	87.786	ENSFHEG00000010866	sf3a1	99	87.532	Fundulus_heteroclitus
ENSAMXG00000005382	sf3a1	99	87.277	ENSGMOG00000016024	sf3a1	99	86.896	Gadus_morhua
ENSAMXG00000005382	sf3a1	97	84.737	ENSGALG00000007937	SF3A1	97	84.204	Gallus_gallus
ENSAMXG00000005382	sf3a1	99	87.405	ENSGAFG00000009111	sf3a1	99	86.896	Gambusia_affinis
ENSAMXG00000005382	sf3a1	99	86.473	ENSGACG00000011893	sf3a1	99	85.461	Gasterosteus_aculeatus
ENSAMXG00000005382	sf3a1	96	82.095	ENSGAGG00000000762	SF3A1	99	81.565	Gopherus_agassizii
ENSAMXG00000005382	sf3a1	99	84.833	ENSGGOG00000012631	SF3A1	99	83.439	Gorilla_gorilla
ENSAMXG00000005382	sf3a1	99	88.535	ENSHBUG00000015795	sf3a1	99	87.898	Haplochromis_burtoni
ENSAMXG00000005382	sf3a1	99	84.170	ENSHGLG00000007907	SF3A1	99	83.609	Heterocephalus_glaber_female
ENSAMXG00000005382	sf3a1	99	84.170	ENSHGLG00100013799	SF3A1	99	83.609	Heterocephalus_glaber_male
ENSAMXG00000005382	sf3a1	99	86.369	ENSHCOG00000015423	sf3a1	99	84.841	Hippocampus_comes
ENSAMXG00000005382	sf3a1	98	91.602	ENSIPUG00000002470	sf3a1	99	91.473	Ictalurus_punctatus
ENSAMXG00000005382	sf3a1	98	85.195	ENSSTOG00000013892	SF3A1	99	83.312	Ictidomys_tridecemlineatus
ENSAMXG00000005382	sf3a1	99	84.556	ENSJJAG00000022566	Sf3a1	99	82.636	Jaculus_jaculus
ENSAMXG00000005382	sf3a1	99	88.153	ENSKMAG00000002400	sf3a1	99	87.898	Kryptolebias_marmoratus
ENSAMXG00000005382	sf3a1	99	88.408	ENSLBEG00000022974	sf3a1	99	87.516	Labrus_bergylta
ENSAMXG00000005382	sf3a1	99	82.911	ENSLACG00000003565	SF3A1	99	81.772	Latimeria_chalumnae
ENSAMXG00000005382	sf3a1	99	88.408	ENSLOCG00000008251	sf3a1	99	88.535	Lepisosteus_oculatus
ENSAMXG00000005382	sf3a1	98	84.735	ENSLAFG00000000448	SF3A1	99	83.059	Loxodonta_africana
ENSAMXG00000005382	sf3a1	99	55.949	ENSLAFG00000026032	-	98	55.038	Loxodonta_africana
ENSAMXG00000005382	sf3a1	99	84.190	ENSMFAG00000031979	SF3A1	99	83.312	Macaca_fascicularis
ENSAMXG00000005382	sf3a1	99	84.190	ENSMMUG00000005547	SF3A1	99	83.312	Macaca_mulatta
ENSAMXG00000005382	sf3a1	99	84.062	ENSMNEG00000037229	SF3A1	99	83.186	Macaca_nemestrina
ENSAMXG00000005382	sf3a1	99	84.319	ENSMLEG00000041908	SF3A1	99	83.439	Mandrillus_leucophaeus
ENSAMXG00000005382	sf3a1	99	88.903	ENSMAMG00000006460	sf3a1	96	89.535	Mastacembelus_armatus
ENSAMXG00000005382	sf3a1	99	88.535	ENSMZEG00005009633	sf3a1	99	87.898	Maylandia_zebra
ENSAMXG00000005382	sf3a1	97	84.737	ENSMGAG00000001330	SF3A1	99	83.808	Meleagris_gallopavo
ENSAMXG00000005382	sf3a1	94	81.140	ENSMAUG00000020317	Sf3a1	94	81.199	Mesocricetus_auratus
ENSAMXG00000005382	sf3a1	99	84.170	ENSMICG00000010038	SF3A1	99	82.554	Microcebus_murinus
ENSAMXG00000005382	sf3a1	99	84.041	ENSMOCG00000008438	Sf3a1	99	83.186	Microtus_ochrogaster
ENSAMXG00000005382	sf3a1	99	87.134	ENSMMOG00000015588	sf3a1	98	87.261	Mola_mola
ENSAMXG00000005382	sf3a1	99	84.427	ENSMODG00000009270	SF3A1	99	83.418	Monodelphis_domestica
ENSAMXG00000005382	sf3a1	99	89.327	ENSMALG00000000148	sf3a1	99	89.688	Monopterus_albus
ENSAMXG00000005382	sf3a1	98	84.605	MGP_CAROLIEiJ_G0016029	Sf3a1	99	83.439	Mus_caroli
ENSAMXG00000005382	sf3a1	98	84.605	ENSMUSG00000002129	Sf3a1	99	83.439	Mus_musculus
ENSAMXG00000005382	sf3a1	98	84.347	MGP_PahariEiJ_G0016862	Sf3a1	99	82.003	Mus_pahari
ENSAMXG00000005382	sf3a1	98	84.605	MGP_SPRETEiJ_G0016870	Sf3a1	99	83.439	Mus_spretus
ENSAMXG00000005382	sf3a1	99	84.299	ENSMPUG00000013144	SF3A1	99	83.439	Mustela_putorius_furo
ENSAMXG00000005382	sf3a1	99	84.190	ENSMLUG00000002139	SF3A1	99	83.312	Myotis_lucifugus
ENSAMXG00000005382	sf3a1	98	85.584	ENSNGAG00000016977	Sf3a1	99	83.186	Nannospalax_galili
ENSAMXG00000005382	sf3a1	99	88.310	ENSNBRG00000016642	sf3a1	99	87.675	Neolamprologus_brichardi
ENSAMXG00000005382	sf3a1	99	84.319	ENSNLEG00000003686	SF3A1	99	83.439	Nomascus_leucogenys
ENSAMXG00000005382	sf3a1	94	77.446	ENSMEUG00000008741	SF3A1	99	75.165	Notamacropus_eugenii
ENSAMXG00000005382	sf3a1	98	84.864	ENSOPRG00000016636	SF3A1	99	83.842	Ochotona_princeps
ENSAMXG00000005382	sf3a1	99	84.447	ENSODEG00000002571	SF3A1	99	83.565	Octodon_degus
ENSAMXG00000005382	sf3a1	99	88.790	ENSONIG00000010848	sf3a1	99	88.153	Oreochromis_niloticus
ENSAMXG00000005382	sf3a1	99	84.299	ENSOCUG00000007633	SF3A1	99	83.376	Oryctolagus_cuniculus
ENSAMXG00000005382	sf3a1	96	87.483	ENSORLG00000013050	sf3a1	99	87.084	Oryzias_latipes
ENSAMXG00000005382	sf3a1	96	87.617	ENSORLG00020003236	sf3a1	94	87.217	Oryzias_latipes_hni
ENSAMXG00000005382	sf3a1	99	87.245	ENSORLG00015017411	sf3a1	99	87.117	Oryzias_latipes_hsok
ENSAMXG00000005382	sf3a1	99	88.265	ENSOMEG00000013362	sf3a1	99	87.755	Oryzias_melastigma
ENSAMXG00000005382	sf3a1	98	84.994	ENSOGAG00000012931	SF3A1	99	83.439	Otolemur_garnettii
ENSAMXG00000005382	sf3a1	99	83.097	ENSOARG00000006849	SF3A1	99	81.496	Ovis_aries
ENSAMXG00000005382	sf3a1	99	83.548	ENSPPAG00000041790	SF3A1	99	82.554	Pan_paniscus
ENSAMXG00000005382	sf3a1	99	84.299	ENSPPRG00000004391	SF3A1	99	83.439	Panthera_pardus
ENSAMXG00000005382	sf3a1	98	84.864	ENSPTIG00000000844	SF3A1	99	84.735	Panthera_tigris_altaica
ENSAMXG00000005382	sf3a1	99	84.833	ENSPTRG00000014240	SF3A1	99	83.439	Pan_troglodytes
ENSAMXG00000005382	sf3a1	99	84.319	ENSPANG00000020772	SF3A1	99	83.439	Papio_anubis
ENSAMXG00000005382	sf3a1	83	92.308	ENSPSIG00000012803	SF3A1	99	92.308	Pelodiscus_sinensis
ENSAMXG00000005382	sf3a1	97	87.287	ENSPMGG00000023096	sf3a1	100	86.458	Periophthalmus_magnuspinnatus
ENSAMXG00000005382	sf3a1	97	85.321	ENSPEMG00000009494	Sf3a1	99	83.186	Peromyscus_maniculatus_bairdii
ENSAMXG00000005382	sf3a1	65	82.524	ENSPMAG00000007139	-	91	78.403	Petromyzon_marinus
ENSAMXG00000005382	sf3a1	99	84.170	ENSPCIG00000022692	SF3A1	99	83.038	Phascolarctos_cinereus
ENSAMXG00000005382	sf3a1	99	78.344	ENSPFOG00000016768	sf3a1	99	78.344	Poecilia_formosa
ENSAMXG00000005382	sf3a1	99	87.913	ENSPLAG00000017268	sf3a1	99	87.786	Poecilia_latipinna
ENSAMXG00000005382	sf3a1	96	88.006	ENSPMEG00000019811	sf3a1	99	87.706	Poecilia_mexicana
ENSAMXG00000005382	sf3a1	99	88.168	ENSPREG00000010347	sf3a1	99	87.913	Poecilia_reticulata
ENSAMXG00000005382	sf3a1	99	84.319	ENSPPYG00000011707	SF3A1	99	83.439	Pongo_abelii
ENSAMXG00000005382	sf3a1	58	82.645	ENSPCAG00000003266	SF3A1	56	82.645	Procavia_capensis
ENSAMXG00000005382	sf3a1	99	84.170	ENSPCOG00000026630	SF3A1	99	82.554	Propithecus_coquereli
ENSAMXG00000005382	sf3a1	95	84.605	ENSPVAG00000017719	SF3A1	94	84.605	Pteropus_vampyrus
ENSAMXG00000005382	sf3a1	99	88.535	ENSPNYG00000018706	sf3a1	99	87.898	Pundamilia_nyererei
ENSAMXG00000005382	sf3a1	100	95.547	ENSPNAG00000003721	sf3a1	100	95.547	Pygocentrus_nattereri
ENSAMXG00000005382	sf3a1	99	84.062	ENSRNOG00000005218	Sf3a1	99	83.059	Rattus_norvegicus
ENSAMXG00000005382	sf3a1	99	84.319	ENSRBIG00000032167	SF3A1	99	83.439	Rhinopithecus_bieti
ENSAMXG00000005382	sf3a1	99	84.319	ENSRROG00000044908	SF3A1	99	83.439	Rhinopithecus_roxellana
ENSAMXG00000005382	sf3a1	94	84.959	ENSSBOG00000021960	SF3A1	98	85.307	Saimiri_boliviensis_boliviensis
ENSAMXG00000005382	sf3a1	98	82.705	ENSSHAG00000003666	SF3A1	99	81.330	Sarcophilus_harrisii
ENSAMXG00000005382	sf3a1	99	90.331	ENSSFOG00015004579	sf3a1	99	90.458	Scleropages_formosus
ENSAMXG00000005382	sf3a1	97	88.351	ENSSMAG00000004275	sf3a1	99	87.006	Scophthalmus_maximus
ENSAMXG00000005382	sf3a1	99	89.809	ENSSDUG00000022219	sf3a1	99	89.172	Seriola_dumerili
ENSAMXG00000005382	sf3a1	99	89.809	ENSSLDG00000012642	sf3a1	99	89.172	Seriola_lalandi_dorsalis
ENSAMXG00000005382	sf3a1	98	82.147	ENSSARG00000005960	SF3A1	100	80.952	Sorex_araneus
ENSAMXG00000005382	sf3a1	97	83.766	ENSSPUG00000018863	SF3A1	99	81.132	Sphenodon_punctatus
ENSAMXG00000005382	sf3a1	99	89.936	ENSSPAG00000011856	sf3a1	99	89.299	Stegastes_partitus
ENSAMXG00000005382	sf3a1	99	84.299	ENSSSCG00000010002	SF3A1	99	83.312	Sus_scrofa
ENSAMXG00000005382	sf3a1	97	84.646	ENSTGUG00000010547	SF3A1	99	83.721	Taeniopygia_guttata
ENSAMXG00000005382	sf3a1	99	86.752	ENSTRUG00000006118	sf3a1	99	84.459	Takifugu_rubripes
ENSAMXG00000005382	sf3a1	58	86.296	ENSTNIG00000005713	sf3a1	88	91.743	Tetraodon_nigroviridis
ENSAMXG00000005382	sf3a1	99	77.735	ENSTBEG00000012771	SF3A1	99	76.991	Tupaia_belangeri
ENSAMXG00000005382	sf3a1	99	84.299	ENSTTRG00000001535	SF3A1	99	83.565	Tursiops_truncatus
ENSAMXG00000005382	sf3a1	99	82.843	ENSUAMG00000006750	SF3A1	98	82.714	Ursus_americanus
ENSAMXG00000005382	sf3a1	99	84.596	ENSUMAG00000016665	SF3A1	99	83.825	Ursus_maritimus
ENSAMXG00000005382	sf3a1	99	84.170	ENSVVUG00000003075	SF3A1	99	83.312	Vulpes_vulpes
ENSAMXG00000005382	sf3a1	97	82.176	ENSXETG00000016144	sf3a1	95	84.490	Xenopus_tropicalis
ENSAMXG00000005382	sf3a1	99	87.150	ENSXCOG00000015653	sf3a1	99	86.641	Xiphophorus_couchianus
ENSAMXG00000005382	sf3a1	99	87.405	ENSXMAG00000002753	sf3a1	99	86.896	Xiphophorus_maculatus