EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000005441 (Gene tree)
Gene ID: 103022349
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 2050 bases
Position: chr6:29964238-29966287
Accession: 103022349
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000005579	LSM	PF01423.22	1.5e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000005579	-	402	XM_007247114	ENSAMXP00000005579	133 (aa)	XP_007247176	W5KDB8

Gene Model

Click here to download ENSAMXG00000005441's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000005441's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000005441	lsm1	56	33.333	ENSAMXG00000042902	lsm8	76	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000005441	lsm1	100	86.466	ENSG00000175324	LSM1	100	86.466	Homo_sapiens
ENSAMXG00000005441	lsm1	100	81.955	ENSAPOG00000010833	lsm1	100	81.955	Acanthochromis_polyacanthus
ENSAMXG00000005441	lsm1	100	86.466	ENSAMEG00000011141	LSM1	100	86.466	Ailuropoda_melanoleuca
ENSAMXG00000005441	lsm1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSAMXG00000005441	lsm1	100	81.955	ENSAOCG00000017096	lsm1	100	81.955	Amphiprion_ocellaris
ENSAMXG00000005441	lsm1	100	81.955	ENSAOCG00000017997	-	100	81.955	Amphiprion_ocellaris
ENSAMXG00000005441	lsm1	100	81.955	ENSAPEG00000011669	lsm1	100	81.955	Amphiprion_percula
ENSAMXG00000005441	lsm1	100	83.459	ENSATEG00000022266	lsm1	100	83.459	Anabas_testudineus
ENSAMXG00000005441	lsm1	100	86.466	ENSANAG00000027785	LSM1	100	86.466	Aotus_nancymaae
ENSAMXG00000005441	lsm1	100	83.459	ENSACLG00000011400	lsm1	100	83.459	Astatotilapia_calliptera
ENSAMXG00000005441	lsm1	100	85.714	ENSBTAG00000001612	LSM1	100	85.714	Bos_taurus
ENSAMXG00000005441	lsm1	87	50.847	WBGene00003076	lsm-1	90	50.847	Caenorhabditis_elegans
ENSAMXG00000005441	lsm1	100	85.714	ENSCJAG00000048015	LSM1	100	85.714	Callithrix_jacchus
ENSAMXG00000005441	lsm1	100	86.466	ENSCAFG00000006113	LSM1	100	86.466	Canis_familiaris
ENSAMXG00000005441	lsm1	100	86.466	ENSCAFG00020001822	LSM1	100	86.466	Canis_lupus_dingo
ENSAMXG00000005441	lsm1	100	86.466	ENSCHIG00000013194	LSM1	100	86.466	Capra_hircus
ENSAMXG00000005441	lsm1	100	86.466	ENSTSYG00000010394	LSM1	100	86.466	Carlito_syrichta
ENSAMXG00000005441	lsm1	100	86.466	ENSCPOG00000032671	LSM1	100	86.466	Cavia_porcellus
ENSAMXG00000005441	lsm1	100	86.466	ENSCCAG00000037171	LSM1	100	86.466	Cebus_capucinus
ENSAMXG00000005441	lsm1	100	86.466	ENSCATG00000020377	LSM1	100	86.466	Cercocebus_atys
ENSAMXG00000005441	lsm1	100	84.962	ENSCLAG00000001137	LSM1	100	84.962	Chinchilla_lanigera
ENSAMXG00000005441	lsm1	100	86.466	ENSCSAG00000015485	LSM1	100	86.466	Chlorocebus_sabaeus
ENSAMXG00000005441	lsm1	100	85.714	ENSCHOG00000006030	LSM1	100	85.714	Choloepus_hoffmanni
ENSAMXG00000005441	lsm1	95	81.890	ENSCPBG00000006569	LSM1	86	81.890	Chrysemys_picta_bellii
ENSAMXG00000005441	lsm1	100	68.421	ENSCING00000013536	-	100	68.421	Ciona_intestinalis
ENSAMXG00000005441	lsm1	100	86.466	ENSCANG00000019173	LSM1	100	86.466	Colobus_angolensis_palliatus
ENSAMXG00000005441	lsm1	80	74.775	ENSCGRG00001002259	-	97	74.775	Cricetulus_griseus_chok1gshd
ENSAMXG00000005441	lsm1	100	85.714	ENSCGRG00001024560	-	100	85.714	Cricetulus_griseus_chok1gshd
ENSAMXG00000005441	lsm1	80	74.775	ENSCGRG00000013603	-	97	74.775	Cricetulus_griseus_crigri
ENSAMXG00000005441	lsm1	100	85.714	ENSCGRG00000006554	-	100	85.714	Cricetulus_griseus_crigri
ENSAMXG00000005441	lsm1	100	81.955	ENSCSEG00000008319	lsm1	92	81.955	Cynoglossus_semilaevis
ENSAMXG00000005441	lsm1	100	82.707	ENSCSEG00000010570	lsm1	92	82.707	Cynoglossus_semilaevis
ENSAMXG00000005441	lsm1	100	84.211	ENSCVAG00000003871	lsm1	100	84.211	Cyprinodon_variegatus
ENSAMXG00000005441	lsm1	100	97.744	ENSDARG00000043177	lsm1	100	97.744	Danio_rerio
ENSAMXG00000005441	lsm1	89	67.227	ENSDNOG00000046620	-	100	67.227	Dasypus_novemcinctus
ENSAMXG00000005441	lsm1	99	82.576	ENSDNOG00000030989	-	99	82.576	Dasypus_novemcinctus
ENSAMXG00000005441	lsm1	100	85.714	ENSDNOG00000032911	-	100	85.714	Dasypus_novemcinctus
ENSAMXG00000005441	lsm1	100	86.466	ENSDNOG00000046387	-	100	86.466	Dasypus_novemcinctus
ENSAMXG00000005441	lsm1	100	86.466	ENSDORG00000028172	Lsm1	100	86.466	Dipodomys_ordii
ENSAMXG00000005441	lsm1	100	57.895	FBgn0261067	LSm1	97	57.895	Drosophila_melanogaster
ENSAMXG00000005441	lsm1	100	84.962	ENSEASG00005016677	LSM1	100	84.962	Equus_asinus_asinus
ENSAMXG00000005441	lsm1	100	84.962	ENSECAG00000010461	LSM1	100	84.962	Equus_caballus
ENSAMXG00000005441	lsm1	72	81.250	ENSEEUG00000015181	LSM1	97	81.250	Erinaceus_europaeus
ENSAMXG00000005441	lsm1	100	84.211	ENSELUG00000002322	lsm1	100	84.211	Esox_lucius
ENSAMXG00000005441	lsm1	100	75.940	ENSELUG00000023374	lsm1	100	75.940	Esox_lucius
ENSAMXG00000005441	lsm1	100	86.466	ENSFCAG00000039335	LSM1	100	86.466	Felis_catus
ENSAMXG00000005441	lsm1	89	86.441	ENSFALG00000006723	LSM1	100	86.441	Ficedula_albicollis
ENSAMXG00000005441	lsm1	100	86.466	ENSFDAG00000007658	LSM1	100	86.466	Fukomys_damarensis
ENSAMXG00000005441	lsm1	100	84.211	ENSFHEG00000009556	lsm1	100	84.211	Fundulus_heteroclitus
ENSAMXG00000005441	lsm1	100	83.459	ENSGMOG00000016651	lsm1	98	83.459	Gadus_morhua
ENSAMXG00000005441	lsm1	100	86.466	ENSGALG00000003245	LSM1	100	86.466	Gallus_gallus
ENSAMXG00000005441	lsm1	100	84.211	ENSGAFG00000011355	lsm1	100	84.211	Gambusia_affinis
ENSAMXG00000005441	lsm1	100	83.459	ENSGACG00000011763	lsm1	98	83.459	Gasterosteus_aculeatus
ENSAMXG00000005441	lsm1	100	88.722	ENSGAGG00000024065	LSM1	100	88.722	Gopherus_agassizii
ENSAMXG00000005441	lsm1	100	86.466	ENSGGOG00000022658	LSM1	100	86.466	Gorilla_gorilla
ENSAMXG00000005441	lsm1	100	83.459	ENSHBUG00000010897	lsm1	100	83.459	Haplochromis_burtoni
ENSAMXG00000005441	lsm1	100	86.466	ENSHGLG00000005711	LSM1	100	86.466	Heterocephalus_glaber_female
ENSAMXG00000005441	lsm1	100	66.917	ENSHGLG00000017574	-	100	66.917	Heterocephalus_glaber_female
ENSAMXG00000005441	lsm1	100	86.466	ENSHGLG00100017660	LSM1	100	86.466	Heterocephalus_glaber_male
ENSAMXG00000005441	lsm1	100	66.917	ENSHGLG00100012152	-	100	66.917	Heterocephalus_glaber_male
ENSAMXG00000005441	lsm1	100	81.955	ENSHCOG00000017233	lsm1	100	81.955	Hippocampus_comes
ENSAMXG00000005441	lsm1	100	96.992	ENSIPUG00000002312	LSM1	100	96.992	Ictalurus_punctatus
ENSAMXG00000005441	lsm1	58	96.104	ENSSTOG00000026870	LSM1	94	96.104	Ictidomys_tridecemlineatus
ENSAMXG00000005441	lsm1	100	84.962	ENSJJAG00000014605	-	100	84.962	Jaculus_jaculus
ENSAMXG00000005441	lsm1	100	83.459	ENSKMAG00000003016	lsm1	100	83.459	Kryptolebias_marmoratus
ENSAMXG00000005441	lsm1	100	83.459	ENSLBEG00000022352	lsm1	100	83.459	Labrus_bergylta
ENSAMXG00000005441	lsm1	90	81.667	ENSLACG00000010947	LSM1	99	81.667	Latimeria_chalumnae
ENSAMXG00000005441	lsm1	100	86.466	ENSLOCG00000015149	lsm1	100	86.466	Lepisosteus_oculatus
ENSAMXG00000005441	lsm1	100	86.466	ENSLAFG00000003534	LSM1	100	86.466	Loxodonta_africana
ENSAMXG00000005441	lsm1	100	86.466	ENSMFAG00000032661	LSM1	100	86.466	Macaca_fascicularis
ENSAMXG00000005441	lsm1	100	86.466	ENSMLEG00000034535	LSM1	100	86.466	Mandrillus_leucophaeus
ENSAMXG00000005441	lsm1	100	84.211	ENSMAMG00000007464	lsm1	100	84.211	Mastacembelus_armatus
ENSAMXG00000005441	lsm1	100	83.459	ENSMZEG00005010321	lsm1	100	83.459	Maylandia_zebra
ENSAMXG00000005441	lsm1	100	86.466	ENSMGAG00000002125	LSM1	100	86.466	Meleagris_gallopavo
ENSAMXG00000005441	lsm1	100	86.466	ENSMICG00000030726	LSM1	100	86.466	Microcebus_murinus
ENSAMXG00000005441	lsm1	100	85.714	ENSMOCG00000022817	Lsm1	100	85.714	Microtus_ochrogaster
ENSAMXG00000005441	lsm1	100	82.707	ENSMMOG00000015466	lsm1	100	82.707	Mola_mola
ENSAMXG00000005441	lsm1	100	87.970	ENSMODG00000010732	-	100	87.970	Monodelphis_domestica
ENSAMXG00000005441	lsm1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSAMXG00000005441	lsm1	100	84.211	MGP_CAROLIEiJ_G0030930	Lsm1	100	84.211	Mus_caroli
ENSAMXG00000005441	lsm1	100	84.211	ENSMUSG00000037296	Lsm1	91	94.872	Mus_musculus
ENSAMXG00000005441	lsm1	100	84.211	MGP_PahariEiJ_G0021400	Lsm1	100	84.211	Mus_pahari
ENSAMXG00000005441	lsm1	100	84.211	MGP_SPRETEiJ_G0032049	Lsm1	100	84.211	Mus_spretus
ENSAMXG00000005441	lsm1	100	87.218	ENSMPUG00000009883	LSM1	100	87.218	Mustela_putorius_furo
ENSAMXG00000005441	lsm1	100	86.466	ENSMLUG00000003734	LSM1	100	86.466	Myotis_lucifugus
ENSAMXG00000005441	lsm1	100	85.714	ENSNGAG00000003753	Lsm1	100	85.714	Nannospalax_galili
ENSAMXG00000005441	lsm1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSAMXG00000005441	lsm1	100	86.466	ENSNLEG00000029390	LSM1	100	86.466	Nomascus_leucogenys
ENSAMXG00000005441	lsm1	100	87.970	ENSMEUG00000014077	LSM1	100	87.970	Notamacropus_eugenii
ENSAMXG00000005441	lsm1	88	82.051	ENSOPRG00000000333	LSM1	100	82.051	Ochotona_princeps
ENSAMXG00000005441	lsm1	100	86.466	ENSODEG00000004834	LSM1	100	86.466	Octodon_degus
ENSAMXG00000005441	lsm1	100	83.459	ENSONIG00000010782	lsm1	100	83.459	Oreochromis_niloticus
ENSAMXG00000005441	lsm1	100	87.970	ENSOANG00000003256	LSM1	100	87.970	Ornithorhynchus_anatinus
ENSAMXG00000005441	lsm1	100	86.466	ENSOCUG00000015399	LSM1	100	86.466	Oryctolagus_cuniculus
ENSAMXG00000005441	lsm1	100	84.962	ENSORLG00000030288	lsm1	100	84.962	Oryzias_latipes
ENSAMXG00000005441	lsm1	100	86.466	ENSORLG00020006213	-	86	86.466	Oryzias_latipes_hni
ENSAMXG00000005441	lsm1	100	84.962	ENSORLG00020003941	lsm1	100	84.962	Oryzias_latipes_hni
ENSAMXG00000005441	lsm1	100	84.962	ENSORLG00015018350	lsm1	100	84.962	Oryzias_latipes_hsok
ENSAMXG00000005441	lsm1	100	83.459	ENSOMEG00000012454	lsm1	100	83.459	Oryzias_melastigma
ENSAMXG00000005441	lsm1	100	86.466	ENSOGAG00000015161	LSM1	100	86.466	Otolemur_garnettii
ENSAMXG00000005441	lsm1	100	86.466	ENSOARG00000001317	LSM1	100	86.466	Ovis_aries
ENSAMXG00000005441	lsm1	100	86.466	ENSPPAG00000032279	LSM1	100	86.466	Pan_paniscus
ENSAMXG00000005441	lsm1	100	86.466	ENSPPRG00000014172	-	100	86.466	Panthera_pardus
ENSAMXG00000005441	lsm1	100	86.466	ENSPTIG00000010289	LSM1	100	86.466	Panthera_tigris_altaica
ENSAMXG00000005441	lsm1	100	86.466	ENSPTRG00000020169	LSM1	100	86.466	Pan_troglodytes
ENSAMXG00000005441	lsm1	100	86.466	ENSPANG00000008814	LSM1	100	86.466	Papio_anubis
ENSAMXG00000005441	lsm1	100	84.211	ENSPKIG00000001839	lsm1	100	84.211	Paramormyrops_kingsleyae
ENSAMXG00000005441	lsm1	100	80.451	ENSPKIG00000019409	LSM1	99	80.451	Paramormyrops_kingsleyae
ENSAMXG00000005441	lsm1	97	82.946	ENSPSIG00000012563	LSM1	98	82.946	Pelodiscus_sinensis
ENSAMXG00000005441	lsm1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSAMXG00000005441	lsm1	85	75.221	ENSPMAG00000002671	lsm1	100	75.221	Petromyzon_marinus
ENSAMXG00000005441	lsm1	100	86.466	ENSPCIG00000008880	LSM1	100	86.466	Phascolarctos_cinereus
ENSAMXG00000005441	lsm1	100	84.211	ENSPFOG00000016029	lsm1	100	84.211	Poecilia_formosa
ENSAMXG00000005441	lsm1	100	84.211	ENSPLAG00000007879	lsm1	100	84.211	Poecilia_latipinna
ENSAMXG00000005441	lsm1	100	84.211	ENSPMEG00000023550	lsm1	100	84.211	Poecilia_mexicana
ENSAMXG00000005441	lsm1	100	84.211	ENSPREG00000009574	lsm1	100	84.211	Poecilia_reticulata
ENSAMXG00000005441	lsm1	100	86.466	ENSPPYG00000018521	LSM1	100	86.466	Pongo_abelii
ENSAMXG00000005441	lsm1	100	86.466	ENSPCOG00000020901	-	100	86.466	Propithecus_coquereli
ENSAMXG00000005441	lsm1	100	86.466	ENSPVAG00000006016	LSM1	100	86.466	Pteropus_vampyrus
ENSAMXG00000005441	lsm1	100	83.459	ENSPNYG00000018067	lsm1	100	83.459	Pundamilia_nyererei
ENSAMXG00000005441	lsm1	100	99.248	ENSPNAG00000013707	lsm1	100	99.248	Pygocentrus_nattereri
ENSAMXG00000005441	lsm1	100	84.962	ENSRNOG00000015375	Lsm1	100	84.962	Rattus_norvegicus
ENSAMXG00000005441	lsm1	100	86.466	ENSRBIG00000027449	LSM1	100	86.466	Rhinopithecus_bieti
ENSAMXG00000005441	lsm1	100	86.466	ENSRROG00000036074	LSM1	100	86.466	Rhinopithecus_roxellana
ENSAMXG00000005441	lsm1	83	47.009	YJL124C	LSM1	67	47.009	Saccharomyces_cerevisiae
ENSAMXG00000005441	lsm1	100	87.970	ENSSHAG00000017260	LSM1	100	87.970	Sarcophilus_harrisii
ENSAMXG00000005441	lsm1	100	83.459	ENSSFOG00015019528	lsm1	100	83.459	Scleropages_formosus
ENSAMXG00000005441	lsm1	100	83.459	ENSSMAG00000004930	lsm1	100	83.459	Scophthalmus_maximus
ENSAMXG00000005441	lsm1	100	81.955	ENSSDUG00000021823	lsm1	100	81.955	Seriola_dumerili
ENSAMXG00000005441	lsm1	100	81.955	ENSSLDG00000012154	lsm1	100	81.955	Seriola_lalandi_dorsalis
ENSAMXG00000005441	lsm1	100	88.722	ENSSPUG00000014878	LSM1	100	88.722	Sphenodon_punctatus
ENSAMXG00000005441	lsm1	100	82.707	ENSSPAG00000020548	lsm1	100	82.707	Stegastes_partitus
ENSAMXG00000005441	lsm1	100	86.466	ENSSSCG00000039058	LSM1	100	86.466	Sus_scrofa
ENSAMXG00000005441	lsm1	100	87.970	ENSTGUG00000004793	LSM1	100	87.970	Taeniopygia_guttata
ENSAMXG00000005441	lsm1	100	86.466	ENSTRUG00000025239	lsm1	100	86.466	Takifugu_rubripes
ENSAMXG00000005441	lsm1	100	84.211	ENSTNIG00000004055	lsm1	100	84.211	Tetraodon_nigroviridis
ENSAMXG00000005441	lsm1	88	82.906	ENSTBEG00000015884	LSM1	100	82.906	Tupaia_belangeri
ENSAMXG00000005441	lsm1	100	86.466	ENSTTRG00000004482	LSM1	100	86.466	Tursiops_truncatus
ENSAMXG00000005441	lsm1	100	86.466	ENSUAMG00000004103	LSM1	100	86.466	Ursus_americanus
ENSAMXG00000005441	lsm1	100	86.466	ENSUMAG00000009132	LSM1	100	86.466	Ursus_maritimus
ENSAMXG00000005441	lsm1	58	94.805	ENSVPAG00000011593	LSM1	100	94.805	Vicugna_pacos
ENSAMXG00000005441	lsm1	61	67.901	ENSVVUG00000014880	-	86	67.901	Vulpes_vulpes
ENSAMXG00000005441	lsm1	100	86.466	ENSVVUG00000020191	LSM1	100	86.466	Vulpes_vulpes
ENSAMXG00000005441	lsm1	100	83.212	ENSXETG00000009004	lsm1	100	83.212	Xenopus_tropicalis
ENSAMXG00000005441	lsm1	100	84.211	ENSXCOG00000015631	lsm1	100	84.211	Xiphophorus_couchianus
ENSAMXG00000005441	lsm1	100	84.211	ENSXMAG00000026637	lsm1	100	84.211	Xiphophorus_maculatus