EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000005458 (Gene tree)
Gene ID: -
Gene Symbol: pdcd11
Alias: cb680|im:7148359|sb:cb680|wu:fc68c10
Full Name: programmed cell death 11
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 29272 bases
Position: chr12:16388656-16417927
Accession: 103038416
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000005589	S1	PF00575.23	1.4e-53	1	4
ENSAMXP00000005589	S1	PF00575.23	1.4e-53	2	4
ENSAMXP00000005589	S1	PF00575.23	1.4e-53	3	4
ENSAMXP00000005589	S1	PF00575.23	1.4e-53	4	4
ENSAMXP00000039371	S1	PF00575.23	7.1e-42	1	2
ENSAMXP00000039371	S1	PF00575.23	7.1e-42	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000005589	-	4563	XM_022674769	ENSAMXP00000005589	1521 (aa)	XP_022530490	W5KDC8
ENSAMXT00000040537	-	2643	-	ENSAMXP00000039371	880 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000005458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000005458's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000005458	pdcd11	100	40.558	ENSG00000148843	PDCD11	99	40.558	Homo_sapiens
ENSAMXG00000005458	pdcd11	98	51.991	ENSAPOG00000015629	pdcd11	99	49.229	Acanthochromis_polyacanthus
ENSAMXG00000005458	pdcd11	99	41.160	ENSAMEG00000017935	PDCD11	99	41.470	Ailuropoda_melanoleuca
ENSAMXG00000005458	pdcd11	94	50.718	ENSACIG00000006458	-	98	50.508	Amphilophus_citrinellus
ENSAMXG00000005458	pdcd11	100	48.875	ENSAOCG00000015287	pdcd11	99	48.985	Amphiprion_ocellaris
ENSAMXG00000005458	pdcd11	97	52.059	ENSAPEG00000020240	pdcd11	97	50.302	Amphiprion_percula
ENSAMXG00000005458	pdcd11	100	49.929	ENSATEG00000021043	pdcd11	99	50.071	Anabas_testudineus
ENSAMXG00000005458	pdcd11	99	43.060	ENSAPLG00000010301	PDCD11	98	41.033	Anas_platyrhynchos
ENSAMXG00000005458	pdcd11	99	41.854	ENSACAG00000004796	PDCD11	96	41.854	Anolis_carolinensis
ENSAMXG00000005458	pdcd11	100	40.448	ENSANAG00000034576	PDCD11	99	40.538	Aotus_nancymaae
ENSAMXG00000005458	pdcd11	100	73.701	ENSACLG00000018236	pdcd11	92	73.701	Astatotilapia_calliptera
ENSAMXG00000005458	pdcd11	100	40.670	ENSBTAG00000009715	PDCD11	99	40.670	Bos_taurus
ENSAMXG00000005458	pdcd11	100	40.269	ENSCJAG00000018257	PDCD11	99	40.269	Callithrix_jacchus
ENSAMXG00000005458	pdcd11	99	41.235	ENSCAFG00000010411	PDCD11	99	41.235	Canis_familiaris
ENSAMXG00000005458	pdcd11	100	41.123	ENSCAFG00020010369	PDCD11	99	41.235	Canis_lupus_dingo
ENSAMXG00000005458	pdcd11	99	40.851	ENSCHIG00000025218	PDCD11	99	40.851	Capra_hircus
ENSAMXG00000005458	pdcd11	99	40.616	ENSTSYG00000033423	PDCD11	98	40.336	Carlito_syrichta
ENSAMXG00000005458	pdcd11	97	45.274	ENSCAPG00000005386	PDCD11	92	45.771	Cavia_aperea
ENSAMXG00000005458	pdcd11	100	40.478	ENSCPOG00000010957	PDCD11	96	42.982	Cavia_porcellus
ENSAMXG00000005458	pdcd11	100	40.717	ENSCCAG00000018950	PDCD11	99	40.717	Cebus_capucinus
ENSAMXG00000005458	pdcd11	100	40.323	ENSCATG00000044331	PDCD11	99	40.466	Cercocebus_atys
ENSAMXG00000005458	pdcd11	99	41.507	ENSCLAG00000001029	PDCD11	98	40.604	Chinchilla_lanigera
ENSAMXG00000005458	pdcd11	100	40.523	ENSCSAG00000005346	PDCD11	99	40.523	Chlorocebus_sabaeus
ENSAMXG00000005458	pdcd11	73	70.543	ENSCHOG00000004796	PDCD11	61	70.543	Choloepus_hoffmanni
ENSAMXG00000005458	pdcd11	91	65.614	ENSCPBG00000024487	PDCD11	99	44.706	Chrysemys_picta_bellii
ENSAMXG00000005458	pdcd11	100	40.597	ENSCANG00000043300	PDCD11	99	40.597	Colobus_angolensis_palliatus
ENSAMXG00000005458	pdcd11	100	40.751	ENSCGRG00001006458	Pdcd11	99	40.214	Cricetulus_griseus_chok1gshd
ENSAMXG00000005458	pdcd11	100	40.617	ENSCGRG00000003583	Pdcd11	99	40.080	Cricetulus_griseus_crigri
ENSAMXG00000005458	pdcd11	98	51.200	ENSCSEG00000010739	pdcd11	99	47.841	Cynoglossus_semilaevis
ENSAMXG00000005458	pdcd11	99	46.572	ENSCVAG00000018903	pdcd11	99	46.572	Cyprinodon_variegatus
ENSAMXG00000005458	pdcd11	97	58.091	ENSDARG00000052480	pdcd11	99	49.519	Danio_rerio
ENSAMXG00000005458	pdcd11	100	40.334	ENSDNOG00000013838	PDCD11	93	65.584	Dasypus_novemcinctus
ENSAMXG00000005458	pdcd11	99	65.657	ENSDORG00000010420	Pdcd11	99	41.110	Dipodomys_ordii
ENSAMXG00000005458	pdcd11	64	34.568	FBgn0039182	CG5728	68	34.688	Drosophila_melanogaster
ENSAMXG00000005458	pdcd11	96	46.841	ENSETEG00000000813	PDCD11	91	46.405	Echinops_telfairi
ENSAMXG00000005458	pdcd11	70	49.310	ENSEBUG00000002358	-	89	49.310	Eptatretus_burgeri
ENSAMXG00000005458	pdcd11	97	42.395	ENSEASG00005015159	PDCD11	99	42.395	Equus_asinus_asinus
ENSAMXG00000005458	pdcd11	100	40.888	ENSECAG00000020507	PDCD11	99	40.888	Equus_caballus
ENSAMXG00000005458	pdcd11	94	43.636	ENSEEUG00000009245	PDCD11	87	42.188	Erinaceus_europaeus
ENSAMXG00000005458	pdcd11	97	54.408	ENSELUG00000004211	pdcd11	99	49.642	Esox_lucius
ENSAMXG00000005458	pdcd11	99	40.580	ENSFCAG00000002384	PDCD11	99	41.841	Felis_catus
ENSAMXG00000005458	pdcd11	100	40.470	ENSFALG00000008775	PDCD11	99	40.470	Ficedula_albicollis
ENSAMXG00000005458	pdcd11	100	39.694	ENSFDAG00000009532	PDCD11	99	39.694	Fukomys_damarensis
ENSAMXG00000005458	pdcd11	90	77.926	ENSFHEG00000022997	pdcd11	87	77.926	Fundulus_heteroclitus
ENSAMXG00000005458	pdcd11	96	48.244	ENSGMOG00000004186	pdcd11	94	46.981	Gadus_morhua
ENSAMXG00000005458	pdcd11	98	42.825	ENSGALG00000008265	PDCD11	99	39.820	Gallus_gallus
ENSAMXG00000005458	pdcd11	97	56.933	ENSGAFG00000012806	pdcd11	94	56.356	Gambusia_affinis
ENSAMXG00000005458	pdcd11	97	50.983	ENSGACG00000018233	pdcd11	76	76.333	Gasterosteus_aculeatus
ENSAMXG00000005458	pdcd11	97	44.543	ENSGAGG00000024314	PDCD11	97	44.543	Gopherus_agassizii
ENSAMXG00000005458	pdcd11	100	40.468	ENSGGOG00000011621	PDCD11	99	40.468	Gorilla_gorilla
ENSAMXG00000005458	pdcd11	97	53.510	ENSHBUG00000020226	pdcd11	99	50.430	Haplochromis_burtoni
ENSAMXG00000005458	pdcd11	100	40.018	ENSHGLG00000001462	PDCD11	98	40.018	Heterocephalus_glaber_female
ENSAMXG00000005458	pdcd11	100	40.018	ENSHGLG00100018779	PDCD11	98	40.018	Heterocephalus_glaber_male
ENSAMXG00000005458	pdcd11	97	50.518	ENSHCOG00000016006	pdcd11	99	46.806	Hippocampus_comes
ENSAMXG00000005458	pdcd11	98	61.866	ENSIPUG00000015102	pdcd11	99	59.544	Ictalurus_punctatus
ENSAMXG00000005458	pdcd11	100	40.629	ENSSTOG00000014553	PDCD11	98	41.587	Ictidomys_tridecemlineatus
ENSAMXG00000005458	pdcd11	100	41.806	ENSJJAG00000015523	Pdcd11	98	41.967	Jaculus_jaculus
ENSAMXG00000005458	pdcd11	95	50.643	ENSKMAG00000021182	pdcd11	99	49.557	Kryptolebias_marmoratus
ENSAMXG00000005458	pdcd11	96	49.941	ENSLBEG00000009990	-	98	49.366	Labrus_bergylta
ENSAMXG00000005458	pdcd11	100	48.860	ENSLOCG00000011818	pdcd11	99	48.860	Lepisosteus_oculatus
ENSAMXG00000005458	pdcd11	100	40.416	ENSLAFG00000008398	PDCD11	99	40.416	Loxodonta_africana
ENSAMXG00000005458	pdcd11	100	40.252	ENSMFAG00000044058	PDCD11	99	40.252	Macaca_fascicularis
ENSAMXG00000005458	pdcd11	100	40.252	ENSMMUG00000007058	PDCD11	99	40.252	Macaca_mulatta
ENSAMXG00000005458	pdcd11	100	40.126	ENSMNEG00000040726	PDCD11	99	40.269	Macaca_nemestrina
ENSAMXG00000005458	pdcd11	100	40.521	ENSMLEG00000040978	PDCD11	99	40.521	Mandrillus_leucophaeus
ENSAMXG00000005458	pdcd11	100	49.080	ENSMAMG00000009572	pdcd11	99	49.080	Mastacembelus_armatus
ENSAMXG00000005458	pdcd11	97	53.165	ENSMZEG00005008949	pdcd11	99	50.287	Maylandia_zebra
ENSAMXG00000005458	pdcd11	99	66.065	ENSMGAG00000010482	PDCD11	99	41.962	Meleagris_gallopavo
ENSAMXG00000005458	pdcd11	100	39.243	ENSMAUG00000014924	Pdcd11	99	39.380	Mesocricetus_auratus
ENSAMXG00000005458	pdcd11	100	40.868	ENSMICG00000012421	PDCD11	99	40.868	Microcebus_murinus
ENSAMXG00000005458	pdcd11	100	41.655	ENSMOCG00000021792	Pdcd11	97	65.696	Microtus_ochrogaster
ENSAMXG00000005458	pdcd11	96	52.804	ENSMMOG00000007572	pdcd11	98	52.291	Mola_mola
ENSAMXG00000005458	pdcd11	95	47.467	ENSMODG00000011077	PDCD11	91	44.992	Monodelphis_domestica
ENSAMXG00000005458	pdcd11	100	49.635	ENSMALG00000003859	pdcd11	98	52.208	Monopterus_albus
ENSAMXG00000005458	pdcd11	100	40.681	MGP_CAROLIEiJ_G0023050	Pdcd11	99	40.681	Mus_caroli
ENSAMXG00000005458	pdcd11	100	40.340	ENSMUSG00000025047	Pdcd11	99	40.519	Mus_musculus
ENSAMXG00000005458	pdcd11	100	40.538	MGP_PahariEiJ_G0014540	Pdcd11	99	40.681	Mus_pahari
ENSAMXG00000005458	pdcd11	100	40.412	MGP_SPRETEiJ_G0023971	Pdcd11	99	40.591	Mus_spretus
ENSAMXG00000005458	pdcd11	99	41.259	ENSMPUG00000016829	PDCD11	99	41.818	Mustela_putorius_furo
ENSAMXG00000005458	pdcd11	100	40.905	ENSMLUG00000004997	PDCD11	99	40.905	Myotis_lucifugus
ENSAMXG00000005458	pdcd11	99	64.286	ENSNGAG00000018143	Pdcd11	94	64.286	Nannospalax_galili
ENSAMXG00000005458	pdcd11	87	59.935	ENSNBRG00000021596	pdcd11	87	61.238	Neolamprologus_brichardi
ENSAMXG00000005458	pdcd11	100	38.399	ENSNLEG00000026700	PDCD11	99	38.399	Nomascus_leucogenys
ENSAMXG00000005458	pdcd11	69	67.556	ENSMEUG00000013719	-	56	67.556	Notamacropus_eugenii
ENSAMXG00000005458	pdcd11	100	40.714	ENSOPRG00000010593	PDCD11	97	40.714	Ochotona_princeps
ENSAMXG00000005458	pdcd11	99	40.828	ENSODEG00000008079	PDCD11	97	40.522	Octodon_degus
ENSAMXG00000005458	pdcd11	97	53.395	ENSONIG00000018835	pdcd11	99	50.573	Oreochromis_niloticus
ENSAMXG00000005458	pdcd11	100	40.398	ENSOANG00000001636	-	99	40.571	Ornithorhynchus_anatinus
ENSAMXG00000005458	pdcd11	100	40.253	ENSOCUG00000006312	PDCD11	97	40.434	Oryctolagus_cuniculus
ENSAMXG00000005458	pdcd11	91	52.222	ENSORLG00000012995	pdcd11	96	51.636	Oryzias_latipes
ENSAMXG00000005458	pdcd11	98	52.566	ENSORLG00020003642	pdcd11	99	49.209	Oryzias_latipes_hni
ENSAMXG00000005458	pdcd11	98	52.794	ENSORLG00015001618	pdcd11	99	49.385	Oryzias_latipes_hsok
ENSAMXG00000005458	pdcd11	73	50.746	ENSOMEG00000010904	pdcd11	97	50.746	Oryzias_melastigma
ENSAMXG00000005458	pdcd11	85	52.277	ENSOMEG00000010947	-	98	49.842	Oryzias_melastigma
ENSAMXG00000005458	pdcd11	100	40.831	ENSOGAG00000008683	PDCD11	99	40.921	Otolemur_garnettii
ENSAMXG00000005458	pdcd11	100	40.217	ENSOARG00000003719	PDCD11	99	40.217	Ovis_aries
ENSAMXG00000005458	pdcd11	100	39.084	ENSPPAG00000024593	PDCD11	99	39.084	Pan_paniscus
ENSAMXG00000005458	pdcd11	99	40.888	ENSPPRG00000015133	PDCD11	99	40.888	Panthera_pardus
ENSAMXG00000005458	pdcd11	99	40.942	ENSPTIG00000011433	PDCD11	99	40.798	Panthera_tigris_altaica
ENSAMXG00000005458	pdcd11	100	40.558	ENSPTRG00000002911	PDCD11	99	40.558	Pan_troglodytes
ENSAMXG00000005458	pdcd11	100	40.198	ENSPANG00000020959	PDCD11	99	40.341	Papio_anubis
ENSAMXG00000005458	pdcd11	99	58.836	ENSPKIG00000000973	pdcd11	94	58.969	Paramormyrops_kingsleyae
ENSAMXG00000005458	pdcd11	94	43.160	ENSPSIG00000005102	PDCD11	95	42.062	Pelodiscus_sinensis
ENSAMXG00000005458	pdcd11	87	71.279	ENSPMGG00000007289	pdcd11	99	70.757	Periophthalmus_magnuspinnatus
ENSAMXG00000005458	pdcd11	99	43.235	ENSPEMG00000010315	Pdcd11	99	65.372	Peromyscus_maniculatus_bairdii
ENSAMXG00000005458	pdcd11	97	57.616	ENSPMAG00000003098	pdcd11	95	36.835	Petromyzon_marinus
ENSAMXG00000005458	pdcd11	100	67.483	ENSPCIG00000001118	PDCD11	99	39.526	Phascolarctos_cinereus
ENSAMXG00000005458	pdcd11	97	51.564	ENSPFOG00000006012	pdcd11	99	47.933	Poecilia_formosa
ENSAMXG00000005458	pdcd11	99	51.645	ENSPLAG00000014494	pdcd11	98	51.351	Poecilia_latipinna
ENSAMXG00000005458	pdcd11	99	47.284	ENSPMEG00000018177	pdcd11	98	52.000	Poecilia_mexicana
ENSAMXG00000005458	pdcd11	96	51.696	ENSPREG00000000475	pdcd11	99	47.498	Poecilia_reticulata
ENSAMXG00000005458	pdcd11	100	41.058	ENSPPYG00000002621	PDCD11	99	41.304	Pongo_abelii
ENSAMXG00000005458	pdcd11	64	58.333	ENSPCAG00000011663	PDCD11	65	58.333	Procavia_capensis
ENSAMXG00000005458	pdcd11	100	37.191	ENSPCOG00000023327	PDCD11	99	37.191	Propithecus_coquereli
ENSAMXG00000005458	pdcd11	100	41.545	ENSPVAG00000004176	PDCD11	97	41.545	Pteropus_vampyrus
ENSAMXG00000005458	pdcd11	97	53.280	ENSPNYG00000003979	pdcd11	99	50.143	Pundamilia_nyererei
ENSAMXG00000005458	pdcd11	93	71.135	ENSPNAG00000017225	pdcd11	99	62.031	Pygocentrus_nattereri
ENSAMXG00000005458	pdcd11	100	40.018	ENSRNOG00000020304	Pdcd11	99	40.108	Rattus_norvegicus
ENSAMXG00000005458	pdcd11	100	40.521	ENSRBIG00000011889	PDCD11	99	40.378	Rhinopithecus_bieti
ENSAMXG00000005458	pdcd11	100	40.431	ENSRROG00000030483	PDCD11	99	40.431	Rhinopithecus_roxellana
ENSAMXG00000005458	pdcd11	83	45.038	YMR229C	-	87	41.042	Saccharomyces_cerevisiae
ENSAMXG00000005458	pdcd11	100	38.175	ENSSBOG00000030308	PDCD11	99	38.175	Saimiri_boliviensis_boliviensis
ENSAMXG00000005458	pdcd11	99	42.523	ENSSHAG00000018258	PDCD11	93	43.235	Sarcophilus_harrisii
ENSAMXG00000005458	pdcd11	99	53.515	ENSSFOG00015003881	pdcd11	99	49.268	Scleropages_formosus
ENSAMXG00000005458	pdcd11	87	79.000	ENSSMAG00000006612	pdcd11	99	50.712	Scophthalmus_maximus
ENSAMXG00000005458	pdcd11	94	52.461	ENSSDUG00000021302	pdcd11	99	53.356	Seriola_dumerili
ENSAMXG00000005458	pdcd11	94	53.389	ENSSLDG00000010228	pdcd11	98	50.887	Seriola_lalandi_dorsalis
ENSAMXG00000005458	pdcd11	80	74.000	ENSSARG00000002540	PDCD11	66	74.000	Sorex_araneus
ENSAMXG00000005458	pdcd11	96	52.582	ENSSPAG00000017558	pdcd11	99	49.124	Stegastes_partitus
ENSAMXG00000005458	pdcd11	100	40.580	ENSSSCG00000010599	PDCD11	99	40.580	Sus_scrofa
ENSAMXG00000005458	pdcd11	95	51.655	ENSTRUG00000014291	pdcd11	99	46.309	Takifugu_rubripes
ENSAMXG00000005458	pdcd11	98	50.679	ENSTNIG00000012085	pdcd11	99	47.427	Tetraodon_nigroviridis
ENSAMXG00000005458	pdcd11	96	65.753	ENSTBEG00000001893	PDCD11	94	63.961	Tupaia_belangeri
ENSAMXG00000005458	pdcd11	92	66.330	ENSTTRG00000003356	PDCD11	86	42.901	Tursiops_truncatus
ENSAMXG00000005458	pdcd11	100	42.210	ENSUAMG00000018015	PDCD11	99	41.413	Ursus_americanus
ENSAMXG00000005458	pdcd11	96	45.341	ENSUMAG00000023567	PDCD11	99	39.827	Ursus_maritimus
ENSAMXG00000005458	pdcd11	70	50.562	ENSVPAG00000007405	PDCD11	57	51.111	Vicugna_pacos
ENSAMXG00000005458	pdcd11	99	41.144	ENSVVUG00000004457	PDCD11	99	41.144	Vulpes_vulpes
ENSAMXG00000005458	pdcd11	99	67.577	ENSXETG00000009482	pdcd11	95	64.308	Xenopus_tropicalis
ENSAMXG00000005458	pdcd11	99	52.915	ENSXCOG00000012420	pdcd11	96	48.330	Xiphophorus_couchianus
ENSAMXG00000005458	pdcd11	92	75.080	ENSXMAG00000004638	pdcd11	96	59.553	Xiphophorus_maculatus