EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000005684 (Gene tree)
Gene ID: 103030392
Gene Symbol: snrnp200
Alias: fb63a09|si:ch211-251j10.5|wu:fb63a09
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 34973 bases
Position: chr6:44586871-44621843
Accession: 103030392
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000005892	ResIII	PF04851.15	4.8e-26	1	2
ENSAMXP00000005892	ResIII	PF04851.15	4.8e-26	2	2
ENSAMXP00000005892	DEAD	PF00270.29	2.2e-53	1	2
ENSAMXP00000005892	DEAD	PF00270.29	2.2e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000005892	-	6408	XM_022670744	ENSAMXP00000005892	2135 (aa)	XP_022526465	W5KE81

Gene Model

Click here to download ENSAMXG00000005684's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000005684's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000005684	snrnp200	97	38.846	ENSAMXG00000001395	ascc3	96	39.493

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000005684	snrnp200	99	90.496	ENSG00000144028	SNRNP200	99	90.630	Homo_sapiens
ENSAMXG00000005684	snrnp200	99	94.734	ENSAPOG00000010223	snrnp200	99	94.734	Acanthochromis_polyacanthus
ENSAMXG00000005684	snrnp200	99	90.543	ENSAMEG00000008996	SNRNP200	99	90.653	Ailuropoda_melanoleuca
ENSAMXG00000005684	snrnp200	97	94.319	ENSACIG00000001764	snrnp200	98	94.370	Amphilophus_citrinellus
ENSAMXG00000005684	snrnp200	99	94.546	ENSAOCG00000024593	snrnp200	99	94.546	Amphiprion_ocellaris
ENSAMXG00000005684	snrnp200	97	93.783	ENSAPEG00000012554	snrnp200	99	93.834	Amphiprion_percula
ENSAMXG00000005684	snrnp200	99	94.781	ENSATEG00000022522	snrnp200	99	94.781	Anabas_testudineus
ENSAMXG00000005684	snrnp200	99	90.146	ENSAPLG00000004313	SNRNP200	99	90.208	Anas_platyrhynchos
ENSAMXG00000005684	snrnp200	99	89.756	ENSACAG00000000434	SNRNP200	100	89.756	Anolis_carolinensis
ENSAMXG00000005684	snrnp200	99	86.521	ENSANAG00000036625	SNRNP200	99	87.769	Aotus_nancymaae
ENSAMXG00000005684	snrnp200	99	94.311	ENSACLG00000011188	snrnp200	99	94.311	Astatotilapia_calliptera
ENSAMXG00000005684	snrnp200	99	90.403	ENSBTAG00000000848	SNRNP200	99	90.512	Bos_taurus
ENSAMXG00000005684	snrnp200	99	90.496	ENSCJAG00000007514	SNRNP200	99	90.606	Callithrix_jacchus
ENSAMXG00000005684	snrnp200	99	89.781	ENSCAFG00020019979	SNRNP200	99	91.564	Canis_lupus_dingo
ENSAMXG00000005684	snrnp200	99	90.449	ENSCHIG00000020611	SNRNP200	99	90.559	Capra_hircus
ENSAMXG00000005684	snrnp200	99	90.543	ENSTSYG00000010467	SNRNP200	99	90.653	Carlito_syrichta
ENSAMXG00000005684	snrnp200	99	90.033	ENSCAPG00000017234	SNRNP200	99	90.142	Cavia_aperea
ENSAMXG00000005684	snrnp200	99	90.356	ENSCPOG00000006776	SNRNP200	99	90.465	Cavia_porcellus
ENSAMXG00000005684	snrnp200	99	90.496	ENSCCAG00000033962	SNRNP200	99	90.606	Cebus_capucinus
ENSAMXG00000005684	snrnp200	99	90.496	ENSCATG00000015790	SNRNP200	99	90.606	Cercocebus_atys
ENSAMXG00000005684	snrnp200	99	90.309	ENSCLAG00000004116	SNRNP200	99	90.418	Chinchilla_lanigera
ENSAMXG00000005684	snrnp200	99	90.496	ENSCSAG00000017369	SNRNP200	99	90.606	Chlorocebus_sabaeus
ENSAMXG00000005684	snrnp200	73	94.488	ENSCHOG00000012981	-	58	94.488	Choloepus_hoffmanni
ENSAMXG00000005684	snrnp200	99	90.229	ENSCPBG00000022571	SNRNP200	99	92.500	Chrysemys_picta_bellii
ENSAMXG00000005684	snrnp200	99	75.828	ENSCING00000005082	-	99	75.972	Ciona_intestinalis
ENSAMXG00000005684	snrnp200	99	85.147	ENSCANG00000033932	SNRNP200	99	90.260	Colobus_angolensis_palliatus
ENSAMXG00000005684	snrnp200	99	90.496	ENSCGRG00001022610	Snrnp200	99	90.606	Cricetulus_griseus_chok1gshd
ENSAMXG00000005684	snrnp200	99	89.995	ENSCGRG00000016472	Snrnp200	99	90.103	Cricetulus_griseus_crigri
ENSAMXG00000005684	snrnp200	99	94.283	ENSCSEG00000016399	snrnp200	99	94.403	Cynoglossus_semilaevis
ENSAMXG00000005684	snrnp200	100	89.232	ENSCVAG00000017631	snrnp200	99	89.234	Cyprinodon_variegatus
ENSAMXG00000005684	snrnp200	100	95.878	ENSDARG00000077536	snrnp200	99	95.908	Danio_rerio
ENSAMXG00000005684	snrnp200	99	89.092	ENSDNOG00000011227	SNRNP200	99	89.197	Dasypus_novemcinctus
ENSAMXG00000005684	snrnp200	99	87.944	ENSDORG00000005861	Snrnp200	99	88.045	Dipodomys_ordii
ENSAMXG00000005684	snrnp200	100	73.591	FBgn0263599	l(3)72Ab	99	73.970	Drosophila_melanogaster
ENSAMXG00000005684	snrnp200	95	89.492	ENSETEG00000000162	SNRNP200	74	89.492	Echinops_telfairi
ENSAMXG00000005684	snrnp200	83	80.556	ENSEBUG00000016524	snrnp200	95	80.556	Eptatretus_burgeri
ENSAMXG00000005684	snrnp200	99	89.464	ENSEASG00005001884	SNRNP200	99	89.476	Equus_asinus_asinus
ENSAMXG00000005684	snrnp200	99	90.543	ENSECAG00000019675	SNRNP200	99	90.653	Equus_caballus
ENSAMXG00000005684	snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSAMXG00000005684	snrnp200	99	95.019	ENSELUG00000018948	snrnp200	99	95.019	Esox_lucius
ENSAMXG00000005684	snrnp200	99	90.590	ENSFCAG00000010699	SNRNP200	99	90.700	Felis_catus
ENSAMXG00000005684	snrnp200	93	87.500	ENSFALG00000001368	-	94	87.500	Ficedula_albicollis
ENSAMXG00000005684	snrnp200	99	90.309	ENSFDAG00000004683	SNRNP200	99	90.418	Fukomys_damarensis
ENSAMXG00000005684	snrnp200	100	91.386	ENSFHEG00000003786	snrnp200	99	91.443	Fundulus_heteroclitus
ENSAMXG00000005684	snrnp200	100	93.692	ENSGMOG00000004881	snrnp200	99	93.712	Gadus_morhua
ENSAMXG00000005684	snrnp200	100	91.573	ENSGAFG00000010807	snrnp200	99	91.631	Gambusia_affinis
ENSAMXG00000005684	snrnp200	100	94.162	ENSGACG00000011474	snrnp200	99	94.231	Gasterosteus_aculeatus
ENSAMXG00000005684	snrnp200	95	91.767	ENSGAGG00000016069	SNRNP200	99	90.093	Gopherus_agassizii
ENSAMXG00000005684	snrnp200	99	90.496	ENSGGOG00000005174	SNRNP200	97	93.155	Gorilla_gorilla
ENSAMXG00000005684	snrnp200	97	91.613	ENSHBUG00000011322	snrnp200	99	91.555	Haplochromis_burtoni
ENSAMXG00000005684	snrnp200	99	90.356	ENSHGLG00000006654	SNRNP200	99	90.465	Heterocephalus_glaber_female
ENSAMXG00000005684	snrnp200	99	90.356	ENSHGLG00100018594	SNRNP200	99	90.465	Heterocephalus_glaber_male
ENSAMXG00000005684	snrnp200	99	90.496	ENSSTOG00000016351	SNRNP200	99	90.606	Ictidomys_tridecemlineatus
ENSAMXG00000005684	snrnp200	99	90.262	ENSJJAG00000023659	Snrnp200	99	90.371	Jaculus_jaculus
ENSAMXG00000005684	snrnp200	100	91.647	ENSKMAG00000003665	snrnp200	99	91.706	Kryptolebias_marmoratus
ENSAMXG00000005684	snrnp200	100	94.710	ENSLBEG00000021585	snrnp200	99	94.734	Labrus_bergylta
ENSAMXG00000005684	snrnp200	82	91.519	ENSLACG00000000226	SNRNP200	99	91.647	Latimeria_chalumnae
ENSAMXG00000005684	snrnp200	100	93.966	ENSLOCG00000015198	snrnp200	99	93.988	Lepisosteus_oculatus
ENSAMXG00000005684	snrnp200	99	90.262	ENSLAFG00000015626	SNRNP200	99	90.371	Loxodonta_africana
ENSAMXG00000005684	snrnp200	99	90.449	ENSMFAG00000040174	SNRNP200	99	92.733	Macaca_fascicularis
ENSAMXG00000005684	snrnp200	99	90.449	ENSMMUG00000023261	SNRNP200	99	90.559	Macaca_mulatta
ENSAMXG00000005684	snrnp200	99	90.403	ENSMNEG00000032398	SNRNP200	99	90.512	Macaca_nemestrina
ENSAMXG00000005684	snrnp200	99	90.496	ENSMLEG00000019083	SNRNP200	99	92.733	Mandrillus_leucophaeus
ENSAMXG00000005684	snrnp200	100	94.478	ENSMAMG00000007851	snrnp200	99	94.502	Mastacembelus_armatus
ENSAMXG00000005684	snrnp200	97	91.613	ENSMZEG00005010787	snrnp200	99	91.555	Maylandia_zebra
ENSAMXG00000005684	snrnp200	97	89.695	ENSMGAG00000001831	SNRNP200	99	89.830	Meleagris_gallopavo
ENSAMXG00000005684	snrnp200	99	90.543	ENSMAUG00000011825	Snrnp200	99	90.653	Mesocricetus_auratus
ENSAMXG00000005684	snrnp200	99	90.449	ENSMICG00000004710	SNRNP200	98	92.394	Microcebus_murinus
ENSAMXG00000005684	snrnp200	99	88.618	ENSMOCG00000011814	Snrnp200	99	88.722	Microtus_ochrogaster
ENSAMXG00000005684	snrnp200	99	92.713	ENSMMOG00000014167	snrnp200	99	92.713	Mola_mola
ENSAMXG00000005684	snrnp200	99	90.356	ENSMODG00000008475	SNRNP200	99	90.418	Monodelphis_domestica
ENSAMXG00000005684	snrnp200	99	94.405	ENSMALG00000001973	snrnp200	99	94.405	Monopterus_albus
ENSAMXG00000005684	snrnp200	99	90.403	MGP_CAROLIEiJ_G0024250	Snrnp200	99	90.512	Mus_caroli
ENSAMXG00000005684	snrnp200	99	90.449	ENSMUSG00000003660	Snrnp200	99	90.559	Mus_musculus
ENSAMXG00000005684	snrnp200	99	90.449	MGP_PahariEiJ_G0025695	Snrnp200	99	90.559	Mus_pahari
ENSAMXG00000005684	snrnp200	99	90.449	MGP_SPRETEiJ_G0025170	Snrnp200	99	92.394	Mus_spretus
ENSAMXG00000005684	snrnp200	99	90.496	ENSMPUG00000008949	SNRNP200	99	90.606	Mustela_putorius_furo
ENSAMXG00000005684	snrnp200	99	87.500	ENSMLUG00000027511	-	99	87.600	Myotis_lucifugus
ENSAMXG00000005684	snrnp200	99	90.276	ENSMLUG00000010493	SNRNP200	99	90.385	Myotis_lucifugus
ENSAMXG00000005684	snrnp200	99	90.496	ENSNGAG00000021993	Snrnp200	99	90.606	Nannospalax_galili
ENSAMXG00000005684	snrnp200	90	94.254	ENSNBRG00000017960	snrnp200	98	94.309	Neolamprologus_brichardi
ENSAMXG00000005684	snrnp200	99	86.186	ENSNLEG00000000025	SNRNP200	99	86.427	Nomascus_leucogenys
ENSAMXG00000005684	snrnp200	99	93.814	ENSMEUG00000010532	SNRNP200	78	93.056	Notamacropus_eugenii
ENSAMXG00000005684	snrnp200	96	89.251	ENSOPRG00000015464	SNRNP200	99	87.177	Ochotona_princeps
ENSAMXG00000005684	snrnp200	99	90.262	ENSODEG00000008366	SNRNP200	99	90.371	Octodon_degus
ENSAMXG00000005684	snrnp200	99	94.217	ENSONIG00000010714	snrnp200	99	94.217	Oreochromis_niloticus
ENSAMXG00000005684	snrnp200	99	90.449	ENSOCUG00000009864	SNRNP200	99	90.559	Oryctolagus_cuniculus
ENSAMXG00000005684	snrnp200	99	93.252	ENSORLG00000012286	snrnp200	99	93.277	Oryzias_latipes
ENSAMXG00000005684	snrnp200	99	93.299	ENSORLG00020004648	snrnp200	99	93.324	Oryzias_latipes_hni
ENSAMXG00000005684	snrnp200	99	93.346	ENSORLG00015019114	snrnp200	99	93.371	Oryzias_latipes_hsok
ENSAMXG00000005684	snrnp200	99	93.700	ENSOMEG00000011834	snrnp200	99	93.700	Oryzias_melastigma
ENSAMXG00000005684	snrnp200	99	90.543	ENSOGAG00000006879	SNRNP200	99	90.653	Otolemur_garnettii
ENSAMXG00000005684	snrnp200	99	89.752	ENSOARG00000013949	SNRNP200	99	89.859	Ovis_aries
ENSAMXG00000005684	snrnp200	99	90.496	ENSPPAG00000041559	SNRNP200	99	90.606	Pan_paniscus
ENSAMXG00000005684	snrnp200	99	90.590	ENSPPRG00000004435	SNRNP200	99	90.700	Panthera_pardus
ENSAMXG00000005684	snrnp200	99	90.169	ENSPTIG00000006380	SNRNP200	99	90.277	Panthera_tigris_altaica
ENSAMXG00000005684	snrnp200	99	90.496	ENSPTRG00000012230	SNRNP200	99	90.606	Pan_troglodytes
ENSAMXG00000005684	snrnp200	99	90.449	ENSPANG00000006017	SNRNP200	99	90.559	Papio_anubis
ENSAMXG00000005684	snrnp200	100	94.619	ENSPKIG00000014762	snrnp200	99	94.643	Paramormyrops_kingsleyae
ENSAMXG00000005684	snrnp200	99	89.097	ENSPSIG00000008580	SNRNP200	99	89.155	Pelodiscus_sinensis
ENSAMXG00000005684	snrnp200	99	90.356	ENSPCIG00000023050	SNRNP200	99	90.418	Phascolarctos_cinereus
ENSAMXG00000005684	snrnp200	100	94.010	ENSPFOG00000015110	snrnp200	99	94.079	Poecilia_formosa
ENSAMXG00000005684	snrnp200	97	94.169	ENSPLAG00000006711	snrnp200	99	94.169	Poecilia_latipinna
ENSAMXG00000005684	snrnp200	97	94.004	ENSPMEG00000021166	snrnp200	99	94.004	Poecilia_mexicana
ENSAMXG00000005684	snrnp200	100	94.242	ENSPREG00000008875	snrnp200	99	94.311	Poecilia_reticulata
ENSAMXG00000005684	snrnp200	99	90.496	ENSPPYG00000012068	SNRNP200	99	90.606	Pongo_abelii
ENSAMXG00000005684	snrnp200	97	94.231	ENSPCAG00000008536	SNRNP200	85	95.833	Procavia_capensis
ENSAMXG00000005684	snrnp200	99	90.496	ENSPCOG00000024608	SNRNP200	99	90.606	Propithecus_coquereli
ENSAMXG00000005684	snrnp200	96	91.198	ENSPVAG00000005860	SNRNP200	92	91.443	Pteropus_vampyrus
ENSAMXG00000005684	snrnp200	99	89.639	ENSPNYG00000017476	snrnp200	99	89.545	Pundamilia_nyererei
ENSAMXG00000005684	snrnp200	100	92.383	ENSPNAG00000010998	snrnp200	99	92.445	Pygocentrus_nattereri
ENSAMXG00000005684	snrnp200	99	90.543	ENSRNOG00000012157	Snrnp200	99	90.653	Rattus_norvegicus
ENSAMXG00000005684	snrnp200	99	90.496	ENSRBIG00000044690	-	99	90.606	Rhinopithecus_bieti
ENSAMXG00000005684	snrnp200	99	90.496	ENSRROG00000037952	-	99	90.606	Rhinopithecus_roxellana
ENSAMXG00000005684	snrnp200	99	90.496	ENSSBOG00000035471	SNRNP200	97	92.920	Saimiri_boliviensis_boliviensis
ENSAMXG00000005684	snrnp200	97	90.131	ENSSHAG00000000758	SNRNP200	99	90.219	Sarcophilus_harrisii
ENSAMXG00000005684	snrnp200	99	94.878	ENSSFOG00015018826	snrnp200	99	94.878	Scleropages_formosus
ENSAMXG00000005684	snrnp200	99	94.734	ENSSMAG00000005463	snrnp200	99	94.734	Scophthalmus_maximus
ENSAMXG00000005684	snrnp200	99	95.205	ENSSDUG00000021410	snrnp200	99	95.205	Seriola_dumerili
ENSAMXG00000005684	snrnp200	99	95.016	ENSSLDG00000010884	snrnp200	99	95.016	Seriola_lalandi_dorsalis
ENSAMXG00000005684	snrnp200	95	89.276	ENSSARG00000010728	SNRNP200	96	89.247	Sorex_araneus
ENSAMXG00000005684	snrnp200	99	90.403	ENSSPUG00000003726	-	99	90.465	Sphenodon_punctatus
ENSAMXG00000005684	snrnp200	99	94.922	ENSSPAG00000001842	snrnp200	99	94.922	Stegastes_partitus
ENSAMXG00000005684	snrnp200	99	90.590	ENSSSCG00000008127	SNRNP200	99	90.700	Sus_scrofa
ENSAMXG00000005684	snrnp200	99	81.902	ENSTGUG00000014475	-	100	81.902	Taeniopygia_guttata
ENSAMXG00000005684	snrnp200	99	94.123	ENSTRUG00000001307	snrnp200	99	94.123	Takifugu_rubripes
ENSAMXG00000005684	snrnp200	99	89.068	ENSTNIG00000004320	snrnp200	99	82.223	Tetraodon_nigroviridis
ENSAMXG00000005684	snrnp200	82	93.427	ENSTBEG00000003329	-	67	93.427	Tupaia_belangeri
ENSAMXG00000005684	snrnp200	99	90.356	ENSTTRG00000004983	SNRNP200	99	90.465	Tursiops_truncatus
ENSAMXG00000005684	snrnp200	75	82.946	ENSUAMG00000008395	-	95	83.140	Ursus_americanus
ENSAMXG00000005684	snrnp200	99	90.590	ENSUMAG00000012385	SNRNP200	99	90.700	Ursus_maritimus
ENSAMXG00000005684	snrnp200	87	96.429	ENSVPAG00000006434	SNRNP200	66	96.429	Vicugna_pacos
ENSAMXG00000005684	snrnp200	99	90.378	ENSVVUG00000026247	SNRNP200	99	90.487	Vulpes_vulpes
ENSAMXG00000005684	snrnp200	99	89.616	ENSXETG00000001243	snrnp200	99	89.676	Xenopus_tropicalis
ENSAMXG00000005684	snrnp200	97	94.159	ENSXMAG00000002058	snrnp200	98	94.159	Xiphophorus_maculatus