EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000005709 (Gene tree)
Gene ID: 103021645
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 21578 bases
Position: chr25:3640470-3662047
Accession: 103021645
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000033987	ResIII	PF04851.15	4.1e-11	1	1
ENSAMXP00000027263	ResIII	PF04851.15	4.5e-11	1	1
ENSAMXP00000005900	ResIII	PF04851.15	5.3e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000051672	-	4564	XM_022684486	ENSAMXP00000033987	1036 (aa)	XP_022540207	UPI000BBDF23B
ENSAMXT00000005900	-	3087	-	ENSAMXP00000005900	1028 (aa)	-	W5KE89
ENSAMXT00000057537	-	4680	XM_022684485	ENSAMXP00000027263	1072 (aa)	XP_022540206	UPI000BBDF0F1

Gene Model

Click here to download ENSAMXG00000005709's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000005709's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000005709	smarca5	89	84.748	ENSAMXG00000011227	smarca1	99	86.007
ENSAMXG00000005709	smarca5	51	40.131	ENSAMXG00000002088	hells	89	40.131
ENSAMXG00000005709	smarca5	53	43.455	ENSAMXG00000012367	chd1l	54	43.455

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000005709	smarca5	94	84.000	ENSG00000102038	SMARCA1	98	80.754	Homo_sapiens
ENSAMXG00000005709	smarca5	97	93.855	ENSAPOG00000016035	smarca5	99	95.534	Acanthochromis_polyacanthus
ENSAMXG00000005709	smarca5	94	82.979	ENSAMEG00000015218	SMARCA1	98	79.828	Ailuropoda_melanoleuca
ENSAMXG00000005709	smarca5	87	95.006	ENSACIG00000016982	smarca5	100	95.006	Amphilophus_citrinellus
ENSAMXG00000005709	smarca5	97	93.855	ENSAOCG00000015578	smarca5	98	92.969	Amphiprion_ocellaris
ENSAMXG00000005709	smarca5	97	93.855	ENSAPEG00000011117	smarca5	99	96.454	Amphiprion_percula
ENSAMXG00000005709	smarca5	100	91.321	ENSATEG00000012894	smarca5	100	91.723	Anabas_testudineus
ENSAMXG00000005709	smarca5	94	85.128	ENSAPLG00000013149	SMARCA1	99	85.128	Anas_platyrhynchos
ENSAMXG00000005709	smarca5	99	81.836	ENSACAG00000011376	SMARCA1	97	81.836	Anolis_carolinensis
ENSAMXG00000005709	smarca5	94	79.179	ENSANAG00000023098	SMARCA1	98	76.209	Aotus_nancymaae
ENSAMXG00000005709	smarca5	100	91.242	ENSACLG00000025356	smarca5	100	91.242	Astatotilapia_calliptera
ENSAMXG00000005709	smarca5	93	84.004	ENSBTAG00000002292	SMARCA1	96	80.396	Bos_taurus
ENSAMXG00000005709	smarca5	96	62.402	WBGene00002169	isw-1	99	61.820	Caenorhabditis_elegans
ENSAMXG00000005709	smarca5	94	84.000	ENSCJAG00000002868	SMARCA1	98	80.754	Callithrix_jacchus
ENSAMXG00000005709	smarca5	94	74.597	ENSCAFG00000018673	SMARCA1	99	75.650	Canis_familiaris
ENSAMXG00000005709	smarca5	94	84.103	ENSCAFG00020001751	SMARCA1	98	80.851	Canis_lupus_dingo
ENSAMXG00000005709	smarca5	94	83.692	ENSCHIG00000009837	SMARCA1	98	80.135	Capra_hircus
ENSAMXG00000005709	smarca5	94	84.103	ENSTSYG00000004240	SMARCA1	94	85.000	Carlito_syrichta
ENSAMXG00000005709	smarca5	94	82.773	ENSCPOG00000013601	SMARCA1	93	83.027	Cavia_porcellus
ENSAMXG00000005709	smarca5	94	81.128	ENSCCAG00000030817	SMARCA1	98	78.046	Cebus_capucinus
ENSAMXG00000005709	smarca5	92	85.174	ENSCATG00000015921	SMARCA1	98	79.828	Cercocebus_atys
ENSAMXG00000005709	smarca5	94	83.385	ENSCLAG00000002171	SMARCA1	98	80.077	Chinchilla_lanigera
ENSAMXG00000005709	smarca5	94	84.000	ENSCSAG00000008460	SMARCA1	98	80.754	Chlorocebus_sabaeus
ENSAMXG00000005709	smarca5	94	85.231	ENSCPBG00000001146	SMARCA1	92	85.391	Chrysemys_picta_bellii
ENSAMXG00000005709	smarca5	96	74.107	ENSCING00000004110	swi/snf	99	74.107	Ciona_intestinalis
ENSAMXG00000005709	smarca5	95	73.800	ENSCSAVG00000004620	-	99	76.063	Ciona_savignyi
ENSAMXG00000005709	smarca5	94	84.103	ENSCANG00000007183	SMARCA1	98	80.851	Colobus_angolensis_palliatus
ENSAMXG00000005709	smarca5	94	83.077	ENSCGRG00001010776	Smarca1	97	80.272	Cricetulus_griseus_chok1gshd
ENSAMXG00000005709	smarca5	92	83.577	ENSCGRG00000015301	Smarca1	94	83.741	Cricetulus_griseus_crigri
ENSAMXG00000005709	smarca5	100	91.354	ENSCSEG00000000328	smarca5	100	91.547	Cynoglossus_semilaevis
ENSAMXG00000005709	smarca5	100	90.357	ENSCVAG00000008668	smarca5	99	94.805	Cyprinodon_variegatus
ENSAMXG00000005709	smarca5	94	83.317	ENSDARG00000012776	smarca1	96	83.333	Danio_rerio
ENSAMXG00000005709	smarca5	100	94.595	ENSDARG00000052348	smarca5	100	94.595	Danio_rerio
ENSAMXG00000005709	smarca5	92	84.963	ENSDNOG00000004315	SMARCA1	96	81.344	Dasypus_novemcinctus
ENSAMXG00000005709	smarca5	97	81.665	ENSDORG00000009270	Smarca1	95	81.791	Dipodomys_ordii
ENSAMXG00000005709	smarca5	93	75.723	FBgn0011604	Iswi	99	73.700	Drosophila_melanogaster
ENSAMXG00000005709	smarca5	78	81.818	ENSETEG00000017426	SMARCA1	83	81.818	Echinops_telfairi
ENSAMXG00000005709	smarca5	97	80.476	ENSEBUG00000001239	smarca5	99	81.000	Eptatretus_burgeri
ENSAMXG00000005709	smarca5	94	80.021	ENSEASG00005008218	SMARCA1	95	82.158	Equus_asinus_asinus
ENSAMXG00000005709	smarca5	94	84.000	ENSECAG00000012106	SMARCA1	98	80.521	Equus_caballus
ENSAMXG00000005709	smarca5	76	83.444	ENSEEUG00000014927	SMARCA1	80	83.444	Erinaceus_europaeus
ENSAMXG00000005709	smarca5	94	84.189	ENSELUG00000010515	smarca1	95	85.142	Esox_lucius
ENSAMXG00000005709	smarca5	94	84.000	ENSFCAG00000018496	SMARCA1	98	80.911	Felis_catus
ENSAMXG00000005709	smarca5	88	86.199	ENSFALG00000000209	SMARCA1	98	86.199	Ficedula_albicollis
ENSAMXG00000005709	smarca5	92	83.697	ENSFDAG00000009818	SMARCA1	93	83.861	Fukomys_damarensis
ENSAMXG00000005709	smarca5	100	89.714	ENSFHEG00000007687	smarca5	100	89.810	Fundulus_heteroclitus
ENSAMXG00000005709	smarca5	96	82.540	ENSGALG00000008431	SMARCA1	99	82.540	Gallus_gallus
ENSAMXG00000005709	smarca5	100	90.743	ENSGAFG00000017731	smarca5	100	90.970	Gambusia_affinis
ENSAMXG00000005709	smarca5	93	85.170	ENSGAGG00000023575	SMARCA1	99	85.331	Gopherus_agassizii
ENSAMXG00000005709	smarca5	68	96.000	ENSGGOG00000012841	-	91	80.531	Gorilla_gorilla
ENSAMXG00000005709	smarca5	94	83.282	ENSHGLG00000003080	SMARCA1	98	79.981	Heterocephalus_glaber_female
ENSAMXG00000005709	smarca5	94	82.773	ENSHGLG00100001102	SMARCA1	98	83.027	Heterocephalus_glaber_male
ENSAMXG00000005709	smarca5	100	92.093	ENSHCOG00000005458	smarca5	100	92.285	Hippocampus_comes
ENSAMXG00000005709	smarca5	94	84.292	ENSIPUG00000016905	Smarca1	99	84.292	Ictalurus_punctatus
ENSAMXG00000005709	smarca5	100	94.112	ENSIPUG00000005229	SMARCA5	99	96.500	Ictalurus_punctatus
ENSAMXG00000005709	smarca5	94	83.897	ENSSTOG00000014524	SMARCA1	99	80.469	Ictidomys_tridecemlineatus
ENSAMXG00000005709	smarca5	94	82.653	ENSJJAG00000002593	Smarca1	98	79.633	Jaculus_jaculus
ENSAMXG00000005709	smarca5	100	90.453	ENSKMAG00000003777	smarca5	100	90.778	Kryptolebias_marmoratus
ENSAMXG00000005709	smarca5	100	91.040	ENSLBEG00000018112	smarca5	99	91.942	Labrus_bergylta
ENSAMXG00000005709	smarca5	94	90.918	ENSLBEG00000013295	SMARCA1	100	95.949	Labrus_bergylta
ENSAMXG00000005709	smarca5	97	83.813	ENSLACG00000016697	SMARCA1	99	84.048	Latimeria_chalumnae
ENSAMXG00000005709	smarca5	94	86.242	ENSLOCG00000014591	smarca1	95	86.242	Lepisosteus_oculatus
ENSAMXG00000005709	smarca5	94	82.875	ENSLAFG00000000896	SMARCA1	98	82.875	Loxodonta_africana
ENSAMXG00000005709	smarca5	94	84.000	ENSMFAG00000002117	SMARCA1	93	85.181	Macaca_fascicularis
ENSAMXG00000005709	smarca5	92	85.174	ENSMMUG00000008818	SMARCA1	97	85.134	Macaca_mulatta
ENSAMXG00000005709	smarca5	92	85.174	ENSMNEG00000041768	SMARCA1	93	85.181	Macaca_nemestrina
ENSAMXG00000005709	smarca5	94	84.000	ENSMLEG00000043198	SMARCA1	98	80.754	Mandrillus_leucophaeus
ENSAMXG00000005709	smarca5	100	90.953	ENSMAMG00000014294	smarca5	98	92.203	Mastacembelus_armatus
ENSAMXG00000005709	smarca5	100	91.242	ENSMZEG00005009369	smarca5	100	91.242	Maylandia_zebra
ENSAMXG00000005709	smarca5	94	84.195	ENSMGAG00000007042	SMARCA1	97	84.195	Meleagris_gallopavo
ENSAMXG00000005709	smarca5	92	83.473	ENSMAUG00000008133	Smarca1	95	80.422	Mesocricetus_auratus
ENSAMXG00000005709	smarca5	94	84.308	ENSMICG00000015768	SMARCA1	97	81.402	Microcebus_murinus
ENSAMXG00000005709	smarca5	94	82.347	ENSMOCG00000009464	Smarca1	97	79.532	Microtus_ochrogaster
ENSAMXG00000005709	smarca5	96	92.951	ENSMMOG00000005547	smarca5	99	92.951	Mola_mola
ENSAMXG00000005709	smarca5	98	81.298	ENSMODG00000013187	-	99	81.818	Monodelphis_domestica
ENSAMXG00000005709	smarca5	94	95.385	ENSMALG00000002081	smarca5	99	92.254	Monopterus_albus
ENSAMXG00000005709	smarca5	94	82.653	MGP_CAROLIEiJ_G0033034	Smarca1	97	79.728	Mus_caroli
ENSAMXG00000005709	smarca5	94	82.653	ENSMUSG00000031099	Smarca1	97	79.651	Mus_musculus
ENSAMXG00000005709	smarca5	93	82.734	MGP_PahariEiJ_G0031579	Smarca1	97	79.651	Mus_pahari
ENSAMXG00000005709	smarca5	94	82.653	MGP_SPRETEiJ_G0034192	Smarca1	97	79.651	Mus_spretus
ENSAMXG00000005709	smarca5	94	83.080	ENSMPUG00000017423	SMARCA1	92	80.153	Mustela_putorius_furo
ENSAMXG00000005709	smarca5	94	81.800	ENSMLUG00000029614	SMARCA1	97	78.654	Myotis_lucifugus
ENSAMXG00000005709	smarca5	92	83.996	ENSNGAG00000006492	Smarca1	95	80.661	Nannospalax_galili
ENSAMXG00000005709	smarca5	94	95.385	ENSNBRG00000004463	smarca5	99	94.058	Neolamprologus_brichardi
ENSAMXG00000005709	smarca5	92	84.277	ENSNLEG00000015179	SMARCA1	94	84.452	Nomascus_leucogenys
ENSAMXG00000005709	smarca5	89	76.882	ENSMEUG00000008819	SMARCA1	98	76.882	Notamacropus_eugenii
ENSAMXG00000005709	smarca5	96	80.452	ENSODEG00000012163	SMARCA1	95	80.558	Octodon_degus
ENSAMXG00000005709	smarca5	100	91.338	ENSONIG00000009993	smarca5	100	91.338	Oreochromis_niloticus
ENSAMXG00000005709	smarca5	93	85.582	ENSOANG00000002862	SMARCA1	99	85.952	Ornithorhynchus_anatinus
ENSAMXG00000005709	smarca5	94	83.897	ENSOCUG00000001047	SMARCA1	98	80.580	Oryctolagus_cuniculus
ENSAMXG00000005709	smarca5	97	92.765	ENSORLG00000021998	smarca5	99	91.393	Oryzias_latipes
ENSAMXG00000005709	smarca5	97	92.864	ENSORLG00020017679	smarca5	98	92.098	Oryzias_latipes_hni
ENSAMXG00000005709	smarca5	97	92.666	ENSORLG00015017210	smarca5	99	91.740	Oryzias_latipes_hsok
ENSAMXG00000005709	smarca5	97	92.567	ENSOMEG00000000086	smarca5	100	90.970	Oryzias_melastigma
ENSAMXG00000005709	smarca5	92	84.304	ENSOGAG00000004399	SMARCA1	95	81.213	Otolemur_garnettii
ENSAMXG00000005709	smarca5	94	83.692	ENSOARG00000014638	SMARCA1	99	83.951	Ovis_aries
ENSAMXG00000005709	smarca5	94	84.000	ENSPPAG00000034647	SMARCA1	98	80.754	Pan_paniscus
ENSAMXG00000005709	smarca5	94	84.103	ENSPPRG00000008929	SMARCA1	98	81.008	Panthera_pardus
ENSAMXG00000005709	smarca5	94	82.258	ENSPTIG00000000915	SMARCA1	96	82.258	Panthera_tigris_altaica
ENSAMXG00000005709	smarca5	94	84.000	ENSPTRG00000049876	SMARCA1	98	79.828	Pan_troglodytes
ENSAMXG00000005709	smarca5	94	84.000	ENSPANG00000003871	SMARCA1	98	80.754	Papio_anubis
ENSAMXG00000005709	smarca5	94	82.533	ENSPKIG00000013411	smarca1	99	82.533	Paramormyrops_kingsleyae
ENSAMXG00000005709	smarca5	94	84.195	ENSPSIG00000010101	SMARCA1	99	85.170	Pelodiscus_sinensis
ENSAMXG00000005709	smarca5	92	83.787	ENSPEMG00000017503	Smarca1	95	80.542	Peromyscus_maniculatus_bairdii
ENSAMXG00000005709	smarca5	94	85.159	ENSPCIG00000015460	SMARCA1	96	85.159	Phascolarctos_cinereus
ENSAMXG00000005709	smarca5	100	90.453	ENSPFOG00000007649	smarca5	100	90.778	Poecilia_formosa
ENSAMXG00000005709	smarca5	100	90.453	ENSPLAG00000003363	smarca5	100	90.778	Poecilia_latipinna
ENSAMXG00000005709	smarca5	100	90.550	ENSPMEG00000019849	smarca5	100	90.874	Poecilia_mexicana
ENSAMXG00000005709	smarca5	100	90.550	ENSPREG00000023250	smarca5	100	90.874	Poecilia_reticulata
ENSAMXG00000005709	smarca5	94	81.128	ENSPPYG00000020703	SMARCA1	98	78.046	Pongo_abelii
ENSAMXG00000005709	smarca5	75	76.872	ENSPCOG00000020722	SMARCA1	94	80.323	Propithecus_coquereli
ENSAMXG00000005709	smarca5	86	83.721	ENSPVAG00000003805	SMARCA1	90	83.947	Pteropus_vampyrus
ENSAMXG00000005709	smarca5	56	95.278	ENSPNYG00000012299	smarca5	91	94.495	Pundamilia_nyererei
ENSAMXG00000005709	smarca5	94	82.974	ENSRNOG00000003762	Smarca1	97	79.922	Rattus_norvegicus
ENSAMXG00000005709	smarca5	94	84.103	ENSRROG00000034167	SMARCA1	98	80.851	Rhinopithecus_roxellana
ENSAMXG00000005709	smarca5	94	83.897	ENSSBOG00000020641	SMARCA1	99	84.156	Saimiri_boliviensis_boliviensis
ENSAMXG00000005709	smarca5	94	80.639	ENSSHAG00000013518	SMARCA1	99	80.761	Sarcophilus_harrisii
ENSAMXG00000005709	smarca5	98	91.707	ENSSFOG00015016794	smarca5	100	94.943	Scleropages_formosus
ENSAMXG00000005709	smarca5	97	83.021	ENSSFOG00015009043	smarca1	99	83.021	Scleropages_formosus
ENSAMXG00000005709	smarca5	97	92.963	ENSSMAG00000004801	smarca5	100	91.083	Scophthalmus_maximus
ENSAMXG00000005709	smarca5	100	91.225	ENSSDUG00000020690	smarca5	100	91.530	Seriola_dumerili
ENSAMXG00000005709	smarca5	100	91.225	ENSSLDG00000025190	smarca5	100	91.530	Seriola_lalandi_dorsalis
ENSAMXG00000005709	smarca5	78	84.342	ENSSARG00000000842	SMARCA1	81	84.342	Sorex_araneus
ENSAMXG00000005709	smarca5	97	81.782	ENSSPUG00000000590	SMARCA1	98	81.782	Sphenodon_punctatus
ENSAMXG00000005709	smarca5	97	93.657	ENSSPAG00000002894	smarca5	97	95.316	Stegastes_partitus
ENSAMXG00000005709	smarca5	92	84.753	ENSSSCG00000012649	SMARCA1	97	81.864	Sus_scrofa
ENSAMXG00000005709	smarca5	94	85.026	ENSTGUG00000003899	-	99	85.026	Taeniopygia_guttata
ENSAMXG00000005709	smarca5	97	92.567	ENSTRUG00000014094	smarca5	98	91.797	Takifugu_rubripes
ENSAMXG00000005709	smarca5	97	91.675	ENSTNIG00000017717	smarca5	96	91.873	Tetraodon_nigroviridis
ENSAMXG00000005709	smarca5	87	82.359	ENSTBEG00000014973	SMARCA1	91	82.359	Tupaia_belangeri
ENSAMXG00000005709	smarca5	93	79.755	ENSTTRG00000006168	SMARCA1	99	78.128	Tursiops_truncatus
ENSAMXG00000005709	smarca5	94	83.795	ENSUAMG00000020201	SMARCA1	98	80.386	Ursus_americanus
ENSAMXG00000005709	smarca5	95	79.331	ENSUMAG00000004073	SMARCA1	97	84.428	Ursus_maritimus
ENSAMXG00000005709	smarca5	73	86.513	ENSVPAG00000010492	-	77	87.197	Vicugna_pacos
ENSAMXG00000005709	smarca5	94	84.103	ENSVVUG00000008878	SMARCA1	98	85.470	Vulpes_vulpes
ENSAMXG00000005709	smarca5	93	84.964	ENSXETG00000001526	smarca1	97	85.109	Xenopus_tropicalis
ENSAMXG00000005709	smarca5	97	92.666	ENSXCOG00000011170	smarca5	99	92.765	Xiphophorus_couchianus
ENSAMXG00000005709	smarca5	100	90.743	ENSXMAG00000009678	smarca5	98	94.651	Xiphophorus_maculatus