EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000005853 (Gene tree)
Gene ID: 103040370
Gene Symbol: rbm17
Alias: zgc:55840
Full Name: RNA binding motif protein 17
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 16148 bases
Position: chr7:13758190-13774337
Accession: 103040370
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000005991	RRM_1	PF00076.22	2.4e-06	1	1
ENSAMXP00000036427	RRM_1	PF00076.22	3.5e-06	1	1
ENSAMXP00000005991	G-patch	PF01585.23	8.3e-13	1	1
ENSAMXP00000036427	G-patch	PF01585.23	1.1e-12	1	1
ENSAMXP00000045059	G-patch	PF01585.23	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000045147	-	2567	XM_007234977	ENSAMXP00000036427	415 (aa)	XP_007235039	UPI000BBDFFA5
ENSAMXT00000054965	-	6327	-	ENSAMXP00000045059	443 (aa)	-	-
ENSAMXT00000005991	-	1173	-	ENSAMXP00000005991	390 (aa)	-	W5KEI0

Gene Model

Click here to download ENSAMXG00000005853's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000005853's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000005853	rbm17	100	79.294	ENSG00000134453	RBM17	100	78.241	Homo_sapiens
ENSAMXG00000005853	rbm17	99	86.158	ENSAPOG00000007101	rbm17	99	84.726	Acanthochromis_polyacanthus
ENSAMXG00000005853	rbm17	100	79.765	ENSAMEG00000002107	RBM17	100	77.176	Ailuropoda_melanoleuca
ENSAMXG00000005853	rbm17	100	82.266	ENSACIG00000006251	rbm17	100	81.034	Amphilophus_citrinellus
ENSAMXG00000005853	rbm17	100	86.288	ENSAOCG00000014892	rbm17	100	84.870	Amphiprion_ocellaris
ENSAMXG00000005853	rbm17	100	86.288	ENSAPEG00000022779	rbm17	100	84.870	Amphiprion_percula
ENSAMXG00000005853	rbm17	100	84.870	ENSATEG00000004406	rbm17	100	84.634	Anabas_testudineus
ENSAMXG00000005853	rbm17	100	80.471	ENSAPLG00000004190	RBM17	100	77.882	Anas_platyrhynchos
ENSAMXG00000005853	rbm17	90	76.864	ENSACAG00000005418	RBM17	99	74.293	Anolis_carolinensis
ENSAMXG00000005853	rbm17	100	70.101	ENSANAG00000019330	-	97	84.746	Aotus_nancymaae
ENSAMXG00000005853	rbm17	100	79.294	ENSANAG00000030127	RBM17	98	86.777	Aotus_nancymaae
ENSAMXG00000005853	rbm17	100	83.417	ENSACLG00000003928	rbm17	100	83.208	Astatotilapia_calliptera
ENSAMXG00000005853	rbm17	100	79.529	ENSBTAG00000021951	RBM17	100	76.941	Bos_taurus
ENSAMXG00000005853	rbm17	100	78.588	ENSBTAG00000011094	-	100	76.000	Bos_taurus
ENSAMXG00000005853	rbm17	75	32.919	WBGene00010233	F58B3.7	56	34.694	Caenorhabditis_elegans
ENSAMXG00000005853	rbm17	100	80.402	ENSCJAG00000020573	RBM17	100	77.638	Callithrix_jacchus
ENSAMXG00000005853	rbm17	100	79.765	ENSCAFG00000005206	RBM17	100	77.176	Canis_familiaris
ENSAMXG00000005853	rbm17	100	80.905	ENSCAFG00020005420	RBM17	100	77.638	Canis_lupus_dingo
ENSAMXG00000005853	rbm17	100	79.529	ENSCHIG00000023204	-	100	77.387	Capra_hircus
ENSAMXG00000005853	rbm17	100	77.412	ENSCHIG00000019921	-	100	74.824	Capra_hircus
ENSAMXG00000005853	rbm17	100	79.294	ENSTSYG00000001165	RBM17	98	88.889	Carlito_syrichta
ENSAMXG00000005853	rbm17	96	60.494	ENSCAPG00000006275	RBM17	100	65.479	Cavia_aperea
ENSAMXG00000005853	rbm17	100	76.368	ENSCPOG00000005679	RBM17	100	76.108	Cavia_porcellus
ENSAMXG00000005853	rbm17	100	79.294	ENSCCAG00000018655	RBM17	98	86.777	Cebus_capucinus
ENSAMXG00000005853	rbm17	100	79.294	ENSCATG00000041566	RBM17	97	87.500	Cercocebus_atys
ENSAMXG00000005853	rbm17	100	79.765	ENSCLAG00000012195	RBM17	99	77.176	Chinchilla_lanigera
ENSAMXG00000005853	rbm17	100	79.294	ENSCSAG00000013564	RBM17	100	76.706	Chlorocebus_sabaeus
ENSAMXG00000005853	rbm17	93	62.183	ENSCHOG00000005131	RBM17	100	59.391	Choloepus_hoffmanni
ENSAMXG00000005853	rbm17	100	79.294	ENSCPBG00000019836	RBM17	100	76.706	Chrysemys_picta_bellii
ENSAMXG00000005853	rbm17	100	45.131	ENSCSAVG00000008782	-	100	44.118	Ciona_savignyi
ENSAMXG00000005853	rbm17	98	72.304	ENSCANG00000023715	-	99	70.694	Colobus_angolensis_palliatus
ENSAMXG00000005853	rbm17	100	79.703	ENSCANG00000030987	RBM17	97	87.500	Colobus_angolensis_palliatus
ENSAMXG00000005853	rbm17	100	63.980	ENSCGRG00001009256	-	100	61.538	Cricetulus_griseus_chok1gshd
ENSAMXG00000005853	rbm17	100	80.000	ENSCGRG00001013842	Rbm17	100	77.412	Cricetulus_griseus_chok1gshd
ENSAMXG00000005853	rbm17	100	80.000	ENSCGRG00000006907	Rbm17	100	77.412	Cricetulus_griseus_crigri
ENSAMXG00000005853	rbm17	100	82.311	ENSCSEG00000018164	rbm17	100	80.425	Cynoglossus_semilaevis
ENSAMXG00000005853	rbm17	100	79.345	ENSCVAG00000002476	rbm17	100	80.856	Cyprinodon_variegatus
ENSAMXG00000005853	rbm17	100	85.782	ENSDARG00000031346	rbm17	100	86.730	Danio_rerio
ENSAMXG00000005853	rbm17	100	80.235	ENSDNOG00000035920	RBM17	100	77.647	Dasypus_novemcinctus
ENSAMXG00000005853	rbm17	99	37.416	FBgn0086683	Spf45	99	34.989	Drosophila_melanogaster
ENSAMXG00000005853	rbm17	88	84.038	ENSETEG00000006642	RBM17	87	84.038	Echinops_telfairi
ENSAMXG00000005853	rbm17	66	66.667	ENSEBUG00000010253	rbm17	86	66.667	Eptatretus_burgeri
ENSAMXG00000005853	rbm17	100	76.427	ENSEASG00005019205	-	100	76.427	Equus_asinus_asinus
ENSAMXG00000005853	rbm17	93	76.396	ENSEASG00005009236	-	100	76.396	Equus_asinus_asinus
ENSAMXG00000005853	rbm17	100	70.353	ENSECAG00000001379	-	100	70.353	Equus_caballus
ENSAMXG00000005853	rbm17	100	70.352	ENSECAG00000008939	RBM17	100	70.352	Equus_caballus
ENSAMXG00000005853	rbm17	86	63.315	ENSEEUG00000013077	RBM17	100	60.326	Erinaceus_europaeus
ENSAMXG00000005853	rbm17	100	84.382	ENSELUG00000006440	rbm17	100	84.149	Esox_lucius
ENSAMXG00000005853	rbm17	100	79.765	ENSFCAG00000031988	RBM17	100	77.176	Felis_catus
ENSAMXG00000005853	rbm17	100	80.471	ENSFALG00000001790	RBM17	100	77.882	Ficedula_albicollis
ENSAMXG00000005853	rbm17	100	79.765	ENSFDAG00000007470	RBM17	100	77.176	Fukomys_damarensis
ENSAMXG00000005853	rbm17	100	84.161	ENSFHEG00000001266	rbm17	100	82.791	Fundulus_heteroclitus
ENSAMXG00000005853	rbm17	99	78.520	ENSGMOG00000008438	rbm17	100	78.282	Gadus_morhua
ENSAMXG00000005853	rbm17	100	80.000	ENSGALG00000006332	RBM17	100	77.412	Gallus_gallus
ENSAMXG00000005853	rbm17	100	82.957	ENSGAFG00000019879	rbm17	100	82.921	Gambusia_affinis
ENSAMXG00000005853	rbm17	99	82.227	ENSGACG00000019174	rbm17	99	81.991	Gasterosteus_aculeatus
ENSAMXG00000005853	rbm17	100	79.294	ENSGAGG00000019906	RBM17	100	76.706	Gopherus_agassizii
ENSAMXG00000005853	rbm17	100	85.782	ENSHBUG00000016624	rbm17	100	84.360	Haplochromis_burtoni
ENSAMXG00000005853	rbm17	100	79.765	ENSHGLG00000011580	RBM17	100	77.176	Heterocephalus_glaber_female
ENSAMXG00000005853	rbm17	100	65.664	ENSHGLG00100010556	-	100	63.158	Heterocephalus_glaber_male
ENSAMXG00000005853	rbm17	100	79.765	ENSHGLG00100010460	RBM17	100	77.176	Heterocephalus_glaber_male
ENSAMXG00000005853	rbm17	99	81.235	ENSHCOG00000010865	rbm17	100	80.523	Hippocampus_comes
ENSAMXG00000005853	rbm17	100	88.626	ENSIPUG00000007699	Rbm17	100	88.152	Ictalurus_punctatus
ENSAMXG00000005853	rbm17	100	80.000	ENSSTOG00000013591	RBM17	100	77.412	Ictidomys_tridecemlineatus
ENSAMXG00000005853	rbm17	100	58.588	ENSJJAG00000000993	-	100	56.235	Jaculus_jaculus
ENSAMXG00000005853	rbm17	100	80.000	ENSJJAG00000022886	Rbm17	100	77.412	Jaculus_jaculus
ENSAMXG00000005853	rbm17	100	81.754	ENSKMAG00000021400	rbm17	100	82.464	Kryptolebias_marmoratus
ENSAMXG00000005853	rbm17	100	84.161	ENSLBEG00000000881	rbm17	100	83.924	Labrus_bergylta
ENSAMXG00000005853	rbm17	99	67.366	ENSLACG00000017297	RBM17	99	63.869	Latimeria_chalumnae
ENSAMXG00000005853	rbm17	100	83.099	ENSLOCG00000015659	rbm17	100	83.099	Lepisosteus_oculatus
ENSAMXG00000005853	rbm17	100	79.765	ENSLAFG00000011629	RBM17	100	77.176	Loxodonta_africana
ENSAMXG00000005853	rbm17	100	79.294	ENSMFAG00000035521	RBM17	97	87.500	Macaca_fascicularis
ENSAMXG00000005853	rbm17	100	79.294	ENSMMUG00000015152	RBM17	97	87.500	Macaca_mulatta
ENSAMXG00000005853	rbm17	100	79.294	ENSMNEG00000017264	RBM17	97	87.500	Macaca_nemestrina
ENSAMXG00000005853	rbm17	100	79.294	ENSMLEG00000029340	RBM17	97	87.500	Mandrillus_leucophaeus
ENSAMXG00000005853	rbm17	100	84.161	ENSMAMG00000000387	rbm17	100	84.397	Mastacembelus_armatus
ENSAMXG00000005853	rbm17	100	85.782	ENSMZEG00005015179	rbm17	100	84.360	Maylandia_zebra
ENSAMXG00000005853	rbm17	100	79.859	ENSMGAG00000003981	RBM17	100	77.283	Meleagris_gallopavo
ENSAMXG00000005853	rbm17	100	80.000	ENSMAUG00000019247	Rbm17	100	77.412	Mesocricetus_auratus
ENSAMXG00000005853	rbm17	100	79.800	ENSMICG00000003976	-	100	77.057	Microcebus_murinus
ENSAMXG00000005853	rbm17	100	74.178	ENSMICG00000041489	-	100	71.596	Microcebus_murinus
ENSAMXG00000005853	rbm17	93	64.810	ENSMOCG00000014517	-	99	65.676	Microtus_ochrogaster
ENSAMXG00000005853	rbm17	100	80.000	ENSMOCG00000011847	Rbm17	100	77.412	Microtus_ochrogaster
ENSAMXG00000005853	rbm17	100	78.922	ENSMMOG00000010264	rbm17	100	75.610	Mola_mola
ENSAMXG00000005853	rbm17	100	80.000	ENSMODG00000016648	RBM17	100	77.412	Monodelphis_domestica
ENSAMXG00000005853	rbm17	100	84.906	ENSMALG00000010597	rbm17	100	84.906	Monopterus_albus
ENSAMXG00000005853	rbm17	100	79.765	MGP_CAROLIEiJ_G0023173	Rbm17	100	77.176	Mus_caroli
ENSAMXG00000005853	rbm17	100	79.765	ENSMUSG00000037197	Rbm17	100	77.176	Mus_musculus
ENSAMXG00000005853	rbm17	100	79.765	MGP_PahariEiJ_G0019233	Rbm17	100	77.176	Mus_pahari
ENSAMXG00000005853	rbm17	100	79.765	MGP_SPRETEiJ_G0024091	Rbm17	100	77.176	Mus_spretus
ENSAMXG00000005853	rbm17	88	76.738	ENSMPUG00000016359	RBM17	96	74.728	Mustela_putorius_furo
ENSAMXG00000005853	rbm17	100	78.169	ENSMLUG00000002302	-	100	75.587	Myotis_lucifugus
ENSAMXG00000005853	rbm17	100	75.529	ENSMLUG00000025709	-	100	75.000	Myotis_lucifugus
ENSAMXG00000005853	rbm17	100	57.323	ENSNGAG00000000663	-	100	56.709	Nannospalax_galili
ENSAMXG00000005853	rbm17	100	80.000	ENSNGAG00000000741	Rbm17	100	77.412	Nannospalax_galili
ENSAMXG00000005853	rbm17	100	79.648	ENSNBRG00000018148	rbm17	100	79.648	Neolamprologus_brichardi
ENSAMXG00000005853	rbm17	100	79.449	ENSNLEG00000033350	RBM17	98	86.777	Nomascus_leucogenys
ENSAMXG00000005853	rbm17	100	75.059	ENSMEUG00000011347	RBM17	100	72.471	Notamacropus_eugenii
ENSAMXG00000005853	rbm17	100	69.630	ENSOPRG00000002993	RBM17	100	69.500	Ochotona_princeps
ENSAMXG00000005853	rbm17	100	79.577	ENSODEG00000004393	RBM17	100	76.995	Octodon_degus
ENSAMXG00000005853	rbm17	97	62.963	ENSODEG00000007286	-	99	62.963	Octodon_degus
ENSAMXG00000005853	rbm17	100	85.308	ENSONIG00000011838	rbm17	100	83.886	Oreochromis_niloticus
ENSAMXG00000005853	rbm17	100	79.294	ENSOANG00000015455	RBM17	100	77.647	Ornithorhynchus_anatinus
ENSAMXG00000005853	rbm17	100	83.688	ENSORLG00000028798	rbm17	100	81.797	Oryzias_latipes
ENSAMXG00000005853	rbm17	100	83.688	ENSORLG00020004593	rbm17	98	81.797	Oryzias_latipes_hni
ENSAMXG00000005853	rbm17	100	83.924	ENSORLG00015000033	rbm17	99	82.033	Oryzias_latipes_hsok
ENSAMXG00000005853	rbm17	100	84.360	ENSOMEG00000012060	rbm17	100	89.937	Oryzias_melastigma
ENSAMXG00000005853	rbm17	100	80.000	ENSOGAG00000015687	RBM17	100	76.941	Otolemur_garnettii
ENSAMXG00000005853	rbm17	100	79.529	ENSOARG00000012975	RBM17	100	76.941	Ovis_aries
ENSAMXG00000005853	rbm17	100	79.703	ENSPPAG00000032347	RBM17	98	86.777	Pan_paniscus
ENSAMXG00000005853	rbm17	100	79.765	ENSPPRG00000010706	RBM17	100	77.176	Panthera_pardus
ENSAMXG00000005853	rbm17	100	79.765	ENSPTIG00000007596	RBM17	100	77.176	Panthera_tigris_altaica
ENSAMXG00000005853	rbm17	100	79.703	ENSPTRG00000002265	RBM17	98	86.777	Pan_troglodytes
ENSAMXG00000005853	rbm17	100	79.294	ENSPANG00000023425	RBM17	97	87.500	Papio_anubis
ENSAMXG00000005853	rbm17	100	82.629	ENSPKIG00000025526	rbm17	100	82.629	Paramormyrops_kingsleyae
ENSAMXG00000005853	rbm17	100	80.841	ENSPKIG00000005048	-	100	80.374	Paramormyrops_kingsleyae
ENSAMXG00000005853	rbm17	100	78.505	ENSPSIG00000012332	RBM17	100	75.935	Pelodiscus_sinensis
ENSAMXG00000005853	rbm17	100	78.358	ENSPMGG00000007980	rbm17	100	80.702	Periophthalmus_magnuspinnatus
ENSAMXG00000005853	rbm17	100	80.000	ENSPEMG00000014320	Rbm17	100	77.412	Peromyscus_maniculatus_bairdii
ENSAMXG00000005853	rbm17	100	79.625	ENSPCIG00000019260	-	100	77.049	Phascolarctos_cinereus
ENSAMXG00000005853	rbm17	100	85.106	ENSPFOG00000013271	rbm17	100	85.106	Poecilia_formosa
ENSAMXG00000005853	rbm17	100	85.343	ENSPLAG00000004455	rbm17	100	85.343	Poecilia_latipinna
ENSAMXG00000005853	rbm17	100	85.106	ENSPMEG00000014864	rbm17	100	85.106	Poecilia_mexicana
ENSAMXG00000005853	rbm17	100	85.273	ENSPREG00000015589	rbm17	100	85.273	Poecilia_reticulata
ENSAMXG00000005853	rbm17	100	79.294	ENSPPYG00000002067	RBM17	100	76.706	Pongo_abelii
ENSAMXG00000005853	rbm17	81	54.913	ENSPPYG00000019042	-	100	56.037	Pongo_abelii
ENSAMXG00000005853	rbm17	99	58.629	ENSPPYG00000019881	-	100	58.629	Pongo_abelii
ENSAMXG00000005853	rbm17	100	72.706	ENSPCAG00000016879	RBM17	100	70.118	Procavia_capensis
ENSAMXG00000005853	rbm17	100	80.653	ENSPCOG00000027881	RBM17	100	77.889	Propithecus_coquereli
ENSAMXG00000005853	rbm17	100	71.642	ENSPVAG00000015499	RBM17	100	71.072	Pteropus_vampyrus
ENSAMXG00000005853	rbm17	100	78.426	ENSPNYG00000015274	rbm17	100	79.040	Pundamilia_nyererei
ENSAMXG00000005853	rbm17	100	95.215	ENSPNAG00000030046	rbm17	100	95.215	Pygocentrus_nattereri
ENSAMXG00000005853	rbm17	100	80.000	ENSRNOG00000018767	Rbm17	100	77.412	Rattus_norvegicus
ENSAMXG00000005853	rbm17	100	79.449	ENSRBIG00000043727	RBM17	97	87.500	Rhinopithecus_bieti
ENSAMXG00000005853	rbm17	100	79.294	ENSRROG00000044142	RBM17	97	87.500	Rhinopithecus_roxellana
ENSAMXG00000005853	rbm17	100	70.449	ENSSBOG00000023653	-	100	67.332	Saimiri_boliviensis_boliviensis
ENSAMXG00000005853	rbm17	100	79.059	ENSSBOG00000031661	-	92	89.474	Saimiri_boliviensis_boliviensis
ENSAMXG00000005853	rbm17	100	80.235	ENSSHAG00000012480	-	100	77.647	Sarcophilus_harrisii
ENSAMXG00000005853	rbm17	100	83.099	ENSSFOG00015009892	rbm17	100	83.099	Scleropages_formosus
ENSAMXG00000005853	rbm17	100	84.635	ENSSMAG00000012368	rbm17	100	81.313	Scophthalmus_maximus
ENSAMXG00000005853	rbm17	100	84.131	ENSSDUG00000015015	rbm17	100	83.991	Seriola_dumerili
ENSAMXG00000005853	rbm17	100	84.131	ENSSLDG00000014486	rbm17	100	83.991	Seriola_lalandi_dorsalis
ENSAMXG00000005853	rbm17	50	81.308	ENSSARG00000001792	-	78	81.308	Sorex_araneus
ENSAMXG00000005853	rbm17	99	79.245	ENSSPUG00000001036	RBM17	99	76.651	Sphenodon_punctatus
ENSAMXG00000005853	rbm17	100	86.052	ENSSPAG00000002338	rbm17	100	84.634	Stegastes_partitus
ENSAMXG00000005853	rbm17	100	79.294	ENSSSCG00000011134	RBM17	100	76.706	Sus_scrofa
ENSAMXG00000005853	rbm17	100	80.706	ENSTGUG00000002013	RBM17	100	78.118	Taeniopygia_guttata
ENSAMXG00000005853	rbm17	100	82.033	ENSTRUG00000010698	rbm17	100	81.797	Takifugu_rubripes
ENSAMXG00000005853	rbm17	100	82.742	ENSTNIG00000006892	rbm17	100	82.506	Tetraodon_nigroviridis
ENSAMXG00000005853	rbm17	100	62.376	ENSTBEG00000014686	RBM17	100	62.376	Tupaia_belangeri
ENSAMXG00000005853	rbm17	90	78.125	ENSTTRG00000001344	RBM17	100	75.260	Tursiops_truncatus
ENSAMXG00000005853	rbm17	100	81.407	ENSUAMG00000009499	RBM17	100	78.392	Ursus_americanus
ENSAMXG00000005853	rbm17	100	79.765	ENSUMAG00000012237	RBM17	100	77.638	Ursus_maritimus
ENSAMXG00000005853	rbm17	100	69.825	ENSVPAG00000005497	RBM17	100	69.825	Vicugna_pacos
ENSAMXG00000005853	rbm17	100	80.905	ENSVVUG00000006780	RBM17	100	77.638	Vulpes_vulpes
ENSAMXG00000005853	rbm17	99	76.066	ENSXETG00000018123	rbm17	100	73.697	Xenopus_tropicalis
ENSAMXG00000005853	rbm17	100	84.323	ENSXMAG00000008674	rbm17	100	84.798	Xiphophorus_maculatus