EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000006108 (Gene tree)
Gene ID: 103040213
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 27096 bases
Position: chr1:1970673-1997768
Accession: 103040213
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000006281	ResIII	PF04851.15	4.3e-12	1	1
ENSAMXP00000006281	DEAD	PF00270.29	1.7e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000006281	-	4851	XM_022670478	ENSAMXP00000006281	1444 (aa)	XP_022526199	W5KFC0

Gene Model

Click here to download ENSAMXG00000006108's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000006108's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000006108	hfm1	51	31.298	ENSAMXG00000001395	ascc3	61	31.298

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000006108	hfm1	90	52.053	ENSG00000162669	HFM1	93	51.909	Homo_sapiens
ENSAMXG00000006108	hfm1	61	75.725	ENSAPOG00000005304	hfm1	99	75.725	Acanthochromis_polyacanthus
ENSAMXG00000006108	hfm1	83	55.213	ENSAMEG00000000432	HFM1	85	55.213	Ailuropoda_melanoleuca
ENSAMXG00000006108	hfm1	67	69.453	ENSACIG00000021553	hfm1	85	69.453	Amphilophus_citrinellus
ENSAMXG00000006108	hfm1	61	76.634	ENSAOCG00000022839	hfm1	99	76.634	Amphiprion_ocellaris
ENSAMXG00000006108	hfm1	61	76.634	ENSAPEG00000014316	hfm1	99	76.634	Amphiprion_percula
ENSAMXG00000006108	hfm1	84	62.025	ENSATEG00000019181	hfm1	99	62.025	Anabas_testudineus
ENSAMXG00000006108	hfm1	67	64.959	ENSAPLG00000013639	HFM1	66	64.959	Anas_platyrhynchos
ENSAMXG00000006108	hfm1	89	51.214	ENSANAG00000029513	HFM1	92	51.214	Aotus_nancymaae
ENSAMXG00000006108	hfm1	66	70.507	ENSACLG00000009033	hfm1	96	73.197	Astatotilapia_calliptera
ENSAMXG00000006108	hfm1	89	52.737	ENSBTAG00000020856	HFM1	92	52.737	Bos_taurus
ENSAMXG00000006108	hfm1	89	52.377	ENSCJAG00000001843	HFM1	92	52.409	Callithrix_jacchus
ENSAMXG00000006108	hfm1	92	52.470	ENSCAFG00000020187	HFM1	91	52.470	Canis_familiaris
ENSAMXG00000006108	hfm1	83	55.396	ENSTSYG00000014250	HFM1	86	55.396	Carlito_syrichta
ENSAMXG00000006108	hfm1	67	65.436	ENSCPOG00000007421	HFM1	68	65.436	Cavia_porcellus
ENSAMXG00000006108	hfm1	88	51.780	ENSCCAG00000033206	HFM1	91	51.780	Cebus_capucinus
ENSAMXG00000006108	hfm1	90	51.542	ENSCATG00000030987	HFM1	93	51.689	Cercocebus_atys
ENSAMXG00000006108	hfm1	76	59.584	ENSCLAG00000005173	HFM1	72	59.584	Chinchilla_lanigera
ENSAMXG00000006108	hfm1	71	58.683	ENSCGRG00001016995	Hfm1	73	58.700	Cricetulus_griseus_chok1gshd
ENSAMXG00000006108	hfm1	73	60.428	ENSCGRG00000017181	Hfm1	73	60.711	Cricetulus_griseus_crigri
ENSAMXG00000006108	hfm1	67	70.102	ENSCSEG00000017659	hfm1	89	70.564	Cynoglossus_semilaevis
ENSAMXG00000006108	hfm1	75	68.359	ENSDARG00000104288	hfm1	99	68.359	Danio_rerio
ENSAMXG00000006108	hfm1	92	51.227	ENSDNOG00000004776	HFM1	83	54.213	Dasypus_novemcinctus
ENSAMXG00000006108	hfm1	79	55.556	ENSDORG00000014661	Hfm1	81	55.556	Dipodomys_ordii
ENSAMXG00000006108	hfm1	66	63.542	ENSEASG00005015424	HFM1	90	63.542	Equus_asinus_asinus
ENSAMXG00000006108	hfm1	92	52.928	ENSECAG00000024039	HFM1	83	55.751	Equus_caballus
ENSAMXG00000006108	hfm1	64	75.599	ENSELUG00000018944	hfm1	99	76.190	Esox_lucius
ENSAMXG00000006108	hfm1	83	54.968	ENSFCAG00000029116	HFM1	85	55.047	Felis_catus
ENSAMXG00000006108	hfm1	84	54.481	ENSFALG00000001781	HFM1	86	54.481	Ficedula_albicollis
ENSAMXG00000006108	hfm1	92	52.758	ENSFDAG00000020816	HFM1	90	52.758	Fukomys_damarensis
ENSAMXG00000006108	hfm1	67	67.864	ENSGMOG00000017436	hfm1	100	67.864	Gadus_morhua
ENSAMXG00000006108	hfm1	66	70.825	ENSGAFG00000018093	hfm1	100	71.065	Gambusia_affinis
ENSAMXG00000006108	hfm1	67	68.318	ENSGACG00000015686	hfm1	99	68.318	Gasterosteus_aculeatus
ENSAMXG00000006108	hfm1	90	51.379	ENSGGOG00000038524	HFM1	93	51.379	Gorilla_gorilla
ENSAMXG00000006108	hfm1	66	71.564	ENSHBUG00000007309	hfm1	87	71.564	Haplochromis_burtoni
ENSAMXG00000006108	hfm1	57	73.114	ENSHCOG00000019632	hfm1	98	73.114	Hippocampus_comes
ENSAMXG00000006108	hfm1	66	81.283	ENSIPUG00000017020	hfm1	99	82.030	Ictalurus_punctatus
ENSAMXG00000006108	hfm1	69	63.536	ENSJJAG00000017198	Hfm1	70	63.536	Jaculus_jaculus
ENSAMXG00000006108	hfm1	63	70.350	ENSKMAG00000002282	hfm1	91	70.350	Kryptolebias_marmoratus
ENSAMXG00000006108	hfm1	72	66.094	ENSLBEG00000006759	hfm1	96	74.729	Labrus_bergylta
ENSAMXG00000006108	hfm1	76	60.830	ENSLACG00000010698	HFM1	100	60.830	Latimeria_chalumnae
ENSAMXG00000006108	hfm1	69	69.043	ENSLOCG00000004931	hfm1	93	69.043	Lepisosteus_oculatus
ENSAMXG00000006108	hfm1	83	52.522	ENSMFAG00000003649	HFM1	85	52.522	Macaca_fascicularis
ENSAMXG00000006108	hfm1	83	54.575	ENSMMUG00000006819	HFM1	85	54.575	Macaca_mulatta
ENSAMXG00000006108	hfm1	55	90.000	ENSMAMG00000004623	hfm1	91	90.000	Mastacembelus_armatus
ENSAMXG00000006108	hfm1	66	70.507	ENSMZEG00005004679	hfm1	96	73.197	Maylandia_zebra
ENSAMXG00000006108	hfm1	54	68.199	ENSMGAG00000008437	HFM1	97	68.199	Meleagris_gallopavo
ENSAMXG00000006108	hfm1	73	60.617	ENSMAUG00000018858	Hfm1	67	64.562	Mesocricetus_auratus
ENSAMXG00000006108	hfm1	73	60.428	ENSMICG00000037935	HFM1	73	60.428	Microcebus_murinus
ENSAMXG00000006108	hfm1	73	60.485	ENSMOCG00000014812	Hfm1	73	60.485	Microtus_ochrogaster
ENSAMXG00000006108	hfm1	63	75.000	ENSMMOG00000006148	hfm1	99	75.000	Mola_mola
ENSAMXG00000006108	hfm1	66	71.172	ENSMALG00000002401	hfm1	100	75.151	Monopterus_albus
ENSAMXG00000006108	hfm1	89	53.312	MGP_CAROLIEiJ_G0027496	Hfm1	82	60.026	Mus_caroli
ENSAMXG00000006108	hfm1	83	54.452	ENSMUSG00000043410	Hfm1	85	54.452	Mus_musculus
ENSAMXG00000006108	hfm1	77	58.206	MGP_PahariEiJ_G0017268	Hfm1	85	54.134	Mus_pahari
ENSAMXG00000006108	hfm1	93	50.730	MGP_SPRETEiJ_G0028495	Hfm1	85	54.661	Mus_spretus
ENSAMXG00000006108	hfm1	76	60.936	ENSMPUG00000004594	HFM1	65	65.744	Mustela_putorius_furo
ENSAMXG00000006108	hfm1	83	55.468	ENSMLUG00000010200	HFM1	85	56.000	Myotis_lucifugus
ENSAMXG00000006108	hfm1	66	67.442	ENSNBRG00000002910	hfm1	97	73.422	Neolamprologus_brichardi
ENSAMXG00000006108	hfm1	90	50.293	ENSNLEG00000010285	HFM1	93	50.293	Nomascus_leucogenys
ENSAMXG00000006108	hfm1	62	61.486	ENSMEUG00000015788	HFM1	61	61.486	Notamacropus_eugenii
ENSAMXG00000006108	hfm1	60	61.175	ENSOPRG00000013916	HFM1	60	61.175	Ochotona_princeps
ENSAMXG00000006108	hfm1	69	70.080	ENSONIG00000010590	hfm1	95	70.080	Oreochromis_niloticus
ENSAMXG00000006108	hfm1	56	71.798	ENSORLG00000026844	hfm1	99	71.798	Oryzias_latipes
ENSAMXG00000006108	hfm1	82	53.758	ENSORLG00020002951	hfm1	97	53.859	Oryzias_latipes_hni
ENSAMXG00000006108	hfm1	92	56.067	ENSOMEG00000016474	hfm1	87	57.564	Oryzias_melastigma
ENSAMXG00000006108	hfm1	83	55.156	ENSOGAG00000032369	HFM1	99	55.156	Otolemur_garnettii
ENSAMXG00000006108	hfm1	89	52.798	ENSOARG00000015812	HFM1	92	52.872	Ovis_aries
ENSAMXG00000006108	hfm1	89	52.718	ENSPPAG00000024582	HFM1	99	52.718	Pan_paniscus
ENSAMXG00000006108	hfm1	83	54.811	ENSPPRG00000003270	HFM1	85	54.811	Panthera_pardus
ENSAMXG00000006108	hfm1	83	55.047	ENSPTIG00000018881	HFM1	85	55.047	Panthera_tigris_altaica
ENSAMXG00000006108	hfm1	90	52.273	ENSPTRG00000000948	HFM1	93	52.273	Pan_troglodytes
ENSAMXG00000006108	hfm1	90	51.909	ENSPANG00000009838	HFM1	93	51.909	Papio_anubis
ENSAMXG00000006108	hfm1	68	73.702	ENSPKIG00000003810	hfm1	94	74.847	Paramormyrops_kingsleyae
ENSAMXG00000006108	hfm1	57	72.276	ENSPMGG00000011059	hfm1	100	72.276	Periophthalmus_magnuspinnatus
ENSAMXG00000006108	hfm1	73	60.485	ENSPEMG00000022852	Hfm1	73	60.485	Peromyscus_maniculatus_bairdii
ENSAMXG00000006108	hfm1	84	55.786	ENSPCIG00000014233	HFM1	65	65.468	Phascolarctos_cinereus
ENSAMXG00000006108	hfm1	67	71.074	ENSPFOG00000017194	hfm1	92	71.074	Poecilia_formosa
ENSAMXG00000006108	hfm1	66	71.564	ENSPLAG00000000571	hfm1	85	71.564	Poecilia_latipinna
ENSAMXG00000006108	hfm1	66	71.564	ENSPMEG00000019475	hfm1	85	71.564	Poecilia_mexicana
ENSAMXG00000006108	hfm1	65	71.534	ENSPREG00000007803	hfm1	100	70.636	Poecilia_reticulata
ENSAMXG00000006108	hfm1	90	51.933	ENSPPYG00000001163	HFM1	93	51.933	Pongo_abelii
ENSAMXG00000006108	hfm1	68	58.794	ENSPVAG00000009713	HFM1	70	58.794	Pteropus_vampyrus
ENSAMXG00000006108	hfm1	66	70.296	ENSPNYG00000001795	hfm1	96	73.077	Pundamilia_nyererei
ENSAMXG00000006108	hfm1	75	75.741	ENSPNAG00000010865	hfm1	100	76.111	Pygocentrus_nattereri
ENSAMXG00000006108	hfm1	67	64.374	ENSRNOG00000023299	Hfm1	67	64.374	Rattus_norvegicus
ENSAMXG00000006108	hfm1	83	54.852	ENSRROG00000045569	HFM1	85	54.852	Rhinopithecus_roxellana
ENSAMXG00000006108	hfm1	83	54.394	ENSSBOG00000027456	HFM1	87	54.394	Saimiri_boliviensis_boliviensis
ENSAMXG00000006108	hfm1	100	58.213	ENSSFOG00015020129	hfm1	100	58.213	Scleropages_formosus
ENSAMXG00000006108	hfm1	63	72.797	ENSSMAG00000006907	hfm1	87	72.797	Scophthalmus_maximus
ENSAMXG00000006108	hfm1	61	75.666	ENSSDUG00000011424	hfm1	99	75.666	Seriola_dumerili
ENSAMXG00000006108	hfm1	62	75.816	ENSSLDG00000016386	hfm1	100	75.816	Seriola_lalandi_dorsalis
ENSAMXG00000006108	hfm1	61	76.271	ENSSPAG00000001023	hfm1	99	76.271	Stegastes_partitus
ENSAMXG00000006108	hfm1	76	61.176	ENSSSCG00000006912	HFM1	70	66.564	Sus_scrofa
ENSAMXG00000006108	hfm1	67	65.057	ENSTGUG00000006172	HFM1	100	65.057	Taeniopygia_guttata
ENSAMXG00000006108	hfm1	67	65.128	ENSTTRG00000013933	HFM1	67	65.128	Tursiops_truncatus
ENSAMXG00000006108	hfm1	73	59.032	ENSVPAG00000011331	HFM1	73	59.032	Vicugna_pacos
ENSAMXG00000006108	hfm1	75	58.494	ENSVVUG00000020760	HFM1	90	63.399	Vulpes_vulpes
ENSAMXG00000006108	hfm1	61	74.233	ENSXMAG00000004178	hfm1	99	74.233	Xiphophorus_maculatus