EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000006296 (Gene tree)
Gene ID: 103021383
Gene Symbol: hnrnpa1a
Alias: zgc:66127
Full Name: heterogeneous nuclear ribonucleoprotein A1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 6544 bases
Position: chr15:9315480-9322023
Accession: 103021383
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000006461	RRM_1	PF00076.22	3.4e-34	1	2
ENSAMXP00000006461	RRM_1	PF00076.22	3.4e-34	2	2
ENSAMXP00000045714	RRM_1	PF00076.22	3.4e-34	1	2
ENSAMXP00000045714	RRM_1	PF00076.22	3.4e-34	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000006461	-	1199	XM_022677069	ENSAMXP00000006461	374 (aa)	XP_022532790	W5KFV0
ENSAMXT00000036975	-	1816	XM_022677068	ENSAMXP00000045714	374 (aa)	XP_022532789	UPI000BBDDC6B

Gene Model

Click here to download ENSAMXG00000006296's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000006296's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000006296	hnrnpa1a	57	32.667	ENSAMXG00000030795	tardbpl	56	30.857
ENSAMXG00000006296	hnrnpa1a	64	37.647	ENSAMXG00000032796	msi2a	52	41.860
ENSAMXG00000006296	hnrnpa1a	81	37.647	ENSAMXG00000010474	msi2b	57	41.860
ENSAMXG00000006296	hnrnpa1a	52	57.949	ENSAMXG00000037730	-	53	60.000
ENSAMXG00000006296	hnrnpa1a	75	35.540	ENSAMXG00000001477	hnrnpd	54	39.884

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000006296	hnrnpa1a	88	60.237	ENSATEG00000022918	hnrnpa1a	86	84.239	Anabas_testudineus
ENSAMXG00000006296	hnrnpa1a	90	63.205	ENSACLG00000006940	-	57	84.293	Astatotilapia_calliptera
ENSAMXG00000006296	hnrnpa1a	88	59.574	ENSCSEG00000007589	hnrnpa1a	68	82.609	Cynoglossus_semilaevis
ENSAMXG00000006296	hnrnpa1a	50	56.250	ENSDORG00000026425	-	51	57.955	Dipodomys_ordii
ENSAMXG00000006296	hnrnpa1a	51	83.598	ENSELUG00000007372	-	51	85.165	Esox_lucius
ENSAMXG00000006296	hnrnpa1a	59	49.550	ENSGAFG00000016803	-	53	55.682	Gambusia_affinis
ENSAMXG00000006296	hnrnpa1a	88	64.264	ENSGAFG00000007751	-	54	85.165	Gambusia_affinis
ENSAMXG00000006296	hnrnpa1a	58	36.508	ENSIPUG00000002023	hnrnpa1a	76	80.000	Ictalurus_punctatus
ENSAMXG00000006296	hnrnpa1a	51	87.302	ENSIPUG00000022440	-	73	88.757	Ictalurus_punctatus
ENSAMXG00000006296	hnrnpa1a	79	63.107	ENSKMAG00000020859	-	55	84.239	Kryptolebias_marmoratus
ENSAMXG00000006296	hnrnpa1a	88	65.046	ENSLBEG00000010010	hnrnpa1a	52	85.165	Labrus_bergylta
ENSAMXG00000006296	hnrnpa1a	51	68.229	ENSMFAG00000028351	-	53	69.399	Macaca_fascicularis
ENSAMXG00000006296	hnrnpa1a	50	83.511	ENSMMOG00000008251	hnrnpa1a	76	84.239	Mola_mola
ENSAMXG00000006296	hnrnpa1a	88	58.967	ENSORLG00000008001	-	56	85.326	Oryzias_latipes
ENSAMXG00000006296	hnrnpa1a	88	58.967	ENSORLG00020006582	hnrnpa1a	85	85.083	Oryzias_latipes_hni
ENSAMXG00000006296	hnrnpa1a	79	42.907	ENSORLG00020006043	-	59	52.273	Oryzias_latipes_hni
ENSAMXG00000006296	hnrnpa1a	88	58.967	ENSORLG00015022294	-	56	85.326	Oryzias_latipes_hsok
ENSAMXG00000006296	hnrnpa1a	89	58.017	ENSOMEG00000015959	-	56	85.326	Oryzias_melastigma
ENSAMXG00000006296	hnrnpa1a	51	80.628	ENSPMGG00000011804	hnrnpa1a	71	80.628	Periophthalmus_magnuspinnatus
ENSAMXG00000006296	hnrnpa1a	51	55.376	ENSPMGG00000016392	-	93	56.667	Periophthalmus_magnuspinnatus
ENSAMXG00000006296	hnrnpa1a	88	63.253	ENSPFOG00000001825	-	54	85.165	Poecilia_formosa
ENSAMXG00000006296	hnrnpa1a	88	63.253	ENSPMEG00000002425	-	54	85.165	Poecilia_mexicana
ENSAMXG00000006296	hnrnpa1a	60	82.511	ENSPNAG00000021630	-	57	88.710	Pygocentrus_nattereri
ENSAMXG00000006296	hnrnpa1a	67	53.785	ENSPNAG00000007752	hnrnpa1a	74	80.435	Pygocentrus_nattereri
ENSAMXG00000006296	hnrnpa1a	52	54.359	ENSSMAG00000010246	-	77	55.747	Scophthalmus_maximus
ENSAMXG00000006296	hnrnpa1a	65	68.724	ENSSMAG00000004641	hnrnpa1a	60	82.162	Scophthalmus_maximus
ENSAMXG00000006296	hnrnpa1a	67	68.651	ENSSDUG00000013908	hnrnpa1a	84	85.556	Seriola_dumerili
ENSAMXG00000006296	hnrnpa1a	51	84.293	ENSSLDG00000003718	hnrnpa1a	80	84.615	Seriola_lalandi_dorsalis
ENSAMXG00000006296	hnrnpa1a	90	61.652	ENSSPAG00000018518	-	58	82.723	Stegastes_partitus
ENSAMXG00000006296	hnrnpa1a	52	77.143	ENSTRUG00000020491	-	56	84.153	Takifugu_rubripes
ENSAMXG00000006296	hnrnpa1a	88	63.253	ENSXMAG00000008076	-	53	85.165	Xiphophorus_maculatus