EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000006330 (Gene tree)
Gene ID: 103024569
Gene Symbol: -
Alias: -
Full Name: RNA-binding protein with serine-rich domain 1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 6373 bases
Position: chr4:986184-992556
Accession: 103024569
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000035362	RRM_1	PF00076.22	3.3e-17	1	1
ENSAMXP00000028020	RRM_1	PF00076.22	3.4e-17	1	1
ENSAMXP00000006493	RRM_1	PF00076.22	2.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000048736	-	1929	-	ENSAMXP00000028020	283 (aa)	-	-
ENSAMXT00000006493	-	732	-	ENSAMXP00000006493	243 (aa)	-	W5KFY2
ENSAMXT00000035068	-	1800	XM_007234088	ENSAMXP00000035362	277 (aa)	XP_007234150	UPI00044104CF

Gene Model

Click here to download ENSAMXG00000006330's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000006330's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000006330	-	84	68.750	ENSG00000205937	RNPS1	85	75.417	Homo_sapiens
ENSAMXG00000006330	-	82	74.459	ENSAPOG00000017310	RNPS1	75	76.395	Acanthochromis_polyacanthus
ENSAMXG00000006330	-	81	65.686	ENSAMEG00000017861	RNPS1	79	75.417	Ailuropoda_melanoleuca
ENSAMXG00000006330	-	81	67.337	ENSACIG00000014367	-	77	73.023	Amphilophus_citrinellus
ENSAMXG00000006330	-	82	69.658	ENSAOCG00000002404	RNPS1	83	74.786	Amphiprion_ocellaris
ENSAMXG00000006330	-	82	69.528	ENSAPEG00000006497	RNPS1	80	74.678	Amphiprion_percula
ENSAMXG00000006330	-	81	66.995	ENSATEG00000024267	RNPS1	83	76.496	Anabas_testudineus
ENSAMXG00000006330	-	84	57.143	ENSAPLG00000006231	RNPS1	50	84.466	Anas_platyrhynchos
ENSAMXG00000006330	-	88	66.063	ENSACAG00000004088	RNPS1	90	66.968	Anolis_carolinensis
ENSAMXG00000006330	-	88	61.261	ENSANAG00000029802	-	83	71.759	Aotus_nancymaae
ENSAMXG00000006330	-	84	68.333	ENSANAG00000028802	RNPS1	85	75.000	Aotus_nancymaae
ENSAMXG00000006330	-	81	73.500	ENSACLG00000021537	-	87	77.056	Astatotilapia_calliptera
ENSAMXG00000006330	-	82	70.259	ENSACLG00000025942	RNPS1	82	77.155	Astatotilapia_calliptera
ENSAMXG00000006330	-	50	52.033	ENSBTAG00000046336	-	69	55.924	Bos_taurus
ENSAMXG00000006330	-	81	65.686	ENSBTAG00000009969	RNPS1	77	75.688	Bos_taurus
ENSAMXG00000006330	-	84	68.750	ENSCJAG00000014969	RNPS1	85	75.417	Callithrix_jacchus
ENSAMXG00000006330	-	81	65.686	ENSCAFG00000019397	RNPS1	79	75.417	Canis_familiaris
ENSAMXG00000006330	-	81	65.686	ENSCAFG00020026159	RNPS1	87	71.287	Canis_lupus_dingo
ENSAMXG00000006330	-	83	59.130	ENSCHIG00000019523	-	72	56.398	Capra_hircus
ENSAMXG00000006330	-	98	53.333	ENSCHIG00000027175	-	73	60.563	Capra_hircus
ENSAMXG00000006330	-	81	69.118	ENSTSYG00000031848	-	89	72.477	Carlito_syrichta
ENSAMXG00000006330	-	94	58.996	ENSTSYG00000001629	RNPS1	85	75.417	Carlito_syrichta
ENSAMXG00000006330	-	81	65.686	ENSCAPG00000007731	RNPS1	79	75.417	Cavia_aperea
ENSAMXG00000006330	-	84	68.750	ENSCPOG00000002066	RNPS1	85	75.417	Cavia_porcellus
ENSAMXG00000006330	-	84	68.333	ENSCCAG00000034480	RNPS1	85	75.000	Cebus_capucinus
ENSAMXG00000006330	-	84	68.750	ENSCATG00000013756	RNPS1	85	75.417	Cercocebus_atys
ENSAMXG00000006330	-	93	63.258	ENSCATG00000042361	-	92	61.181	Cercocebus_atys
ENSAMXG00000006330	-	84	68.750	ENSCLAG00000015546	RNPS1	85	75.417	Chinchilla_lanigera
ENSAMXG00000006330	-	97	72.727	ENSCSAG00000005219	-	81	74.583	Chlorocebus_sabaeus
ENSAMXG00000006330	-	82	67.500	ENSCHOG00000004866	RNPS1	79	74.167	Choloepus_hoffmanni
ENSAMXG00000006330	-	57	83.193	ENSCPBG00000000214	RNPS1	74	55.660	Chrysemys_picta_bellii
ENSAMXG00000006330	-	84	68.750	ENSCANG00000041307	RNPS1	85	75.417	Colobus_angolensis_palliatus
ENSAMXG00000006330	-	84	68.750	ENSCGRG00001020431	Rnps1	85	75.417	Cricetulus_griseus_chok1gshd
ENSAMXG00000006330	-	81	65.686	ENSCGRG00000014021	Rnps1	78	75.688	Cricetulus_griseus_crigri
ENSAMXG00000006330	-	82	75.983	ENSCSEG00000000402	RNPS1	76	78.261	Cynoglossus_semilaevis
ENSAMXG00000006330	-	82	69.099	ENSCSEG00000015997	RNPS1	80	72.961	Cynoglossus_semilaevis
ENSAMXG00000006330	-	81	67.327	ENSCVAG00000010868	RNPS1	77	73.853	Cyprinodon_variegatus
ENSAMXG00000006330	-	82	69.658	ENSDARG00000100188	RNPS1	83	74.786	Danio_rerio
ENSAMXG00000006330	-	82	69.658	ENSDARG00000116743	rnps1	83	74.786	Danio_rerio
ENSAMXG00000006330	-	81	65.686	ENSDNOG00000016081	RNPS1	79	75.417	Dasypus_novemcinctus
ENSAMXG00000006330	-	84	68.750	ENSDORG00000001755	Rnps1	85	75.417	Dipodomys_ordii
ENSAMXG00000006330	-	81	65.686	ENSEASG00005004862	RNPS1	79	75.417	Equus_asinus_asinus
ENSAMXG00000006330	-	80	66.337	ENSECAG00000023288	RNPS1	78	68.037	Equus_caballus
ENSAMXG00000006330	-	81	73.469	ENSELUG00000015003	RNPS1	77	73.585	Esox_lucius
ENSAMXG00000006330	-	84	69.167	ENSFCAG00000007690	RNPS1	85	75.833	Felis_catus
ENSAMXG00000006330	-	84	70.711	ENSFALG00000004868	RNPS1	85	77.917	Ficedula_albicollis
ENSAMXG00000006330	-	84	68.750	ENSFDAG00000003386	RNPS1	85	75.417	Fukomys_damarensis
ENSAMXG00000006330	-	81	68.966	ENSFHEG00000011705	RNPS1	77	74.429	Fundulus_heteroclitus
ENSAMXG00000006330	-	82	67.686	ENSGMOG00000001503	RNPS1	82	69.231	Gadus_morhua
ENSAMXG00000006330	-	84	70.833	ENSGALG00000009288	RNPS1	85	77.917	Gallus_gallus
ENSAMXG00000006330	-	81	66.337	ENSGAFG00000005457	RNPS1	77	76.147	Gambusia_affinis
ENSAMXG00000006330	-	82	75.109	ENSGACG00000005641	-	82	76.419	Gasterosteus_aculeatus
ENSAMXG00000006330	-	81	63.725	ENSGACG00000011261	RNPS1	83	76.170	Gasterosteus_aculeatus
ENSAMXG00000006330	-	81	69.608	ENSGAGG00000010452	RNPS1	78	76.250	Gopherus_agassizii
ENSAMXG00000006330	-	84	63.084	ENSGGOG00000026421	-	92	67.364	Gorilla_gorilla
ENSAMXG00000006330	-	84	68.750	ENSGGOG00000014275	RNPS1	85	75.417	Gorilla_gorilla
ENSAMXG00000006330	-	82	70.259	ENSHBUG00000002494	RNPS1	82	77.155	Haplochromis_burtoni
ENSAMXG00000006330	-	81	73.500	ENSHBUG00000017337	-	83	76.824	Haplochromis_burtoni
ENSAMXG00000006330	-	84	68.750	ENSHGLG00000013957	RNPS1	85	75.417	Heterocephalus_glaber_female
ENSAMXG00000006330	-	86	61.504	ENSHGLG00000006292	-	87	72.685	Heterocephalus_glaber_female
ENSAMXG00000006330	-	84	68.619	ENSHGLG00100001721	-	78	68.750	Heterocephalus_glaber_male
ENSAMXG00000006330	-	91	68.340	ENSHGLG00100015267	-	78	72.477	Heterocephalus_glaber_male
ENSAMXG00000006330	-	84	68.750	ENSHGLG00100003539	RNPS1	85	75.417	Heterocephalus_glaber_male
ENSAMXG00000006330	-	84	66.190	ENSHGLG00100011610	-	92	62.996	Heterocephalus_glaber_male
ENSAMXG00000006330	-	82	63.319	ENSHCOG00000002546	-	82	65.066	Hippocampus_comes
ENSAMXG00000006330	-	81	63.959	ENSJJAG00000010326	-	72	66.825	Jaculus_jaculus
ENSAMXG00000006330	-	84	69.167	ENSJJAG00000015576	-	85	75.833	Jaculus_jaculus
ENSAMXG00000006330	-	80	66.162	ENSJJAG00000019234	-	62	70.093	Jaculus_jaculus
ENSAMXG00000006330	-	82	70.386	ENSKMAG00000009135	RNPS1	82	74.249	Kryptolebias_marmoratus
ENSAMXG00000006330	-	81	65.196	ENSMFAG00000044121	-	75	66.055	Macaca_fascicularis
ENSAMXG00000006330	-	84	68.750	ENSMFAG00000042142	RNPS1	85	75.417	Macaca_fascicularis
ENSAMXG00000006330	-	86	66.803	ENSMMUG00000041726	-	84	70.417	Macaca_mulatta
ENSAMXG00000006330	-	84	65.714	ENSMMUG00000019238	-	91	66.809	Macaca_mulatta
ENSAMXG00000006330	-	86	67.213	ENSMNEG00000024827	-	76	71.101	Macaca_nemestrina
ENSAMXG00000006330	-	84	68.750	ENSMLEG00000036928	RNPS1	85	75.417	Mandrillus_leucophaeus
ENSAMXG00000006330	-	84	64.762	ENSMLEG00000040232	-	91	62.128	Mandrillus_leucophaeus
ENSAMXG00000006330	-	93	63.598	ENSMAMG00000021609	-	83	74.359	Mastacembelus_armatus
ENSAMXG00000006330	-	82	81.579	ENSMAMG00000021148	-	81	80.870	Mastacembelus_armatus
ENSAMXG00000006330	-	81	73.500	ENSMZEG00005006256	-	83	77.056	Maylandia_zebra
ENSAMXG00000006330	-	82	70.259	ENSMZEG00005012742	RNPS1	82	77.155	Maylandia_zebra
ENSAMXG00000006330	-	81	71.569	ENSMGAG00000010042	RNPS1	92	73.991	Meleagris_gallopavo
ENSAMXG00000006330	-	84	68.750	ENSMICG00000031543	RNPS1	85	75.417	Microcebus_murinus
ENSAMXG00000006330	-	84	68.750	ENSMOCG00000003429	Rnps1	85	75.417	Microtus_ochrogaster
ENSAMXG00000006330	-	96	59.023	ENSMOCG00000000276	-	68	58.571	Microtus_ochrogaster
ENSAMXG00000006330	-	84	72.034	ENSMMOG00000004680	-	77	75.463	Mola_mola
ENSAMXG00000006330	-	81	67.677	ENSMMOG00000010863	RNPS1	77	74.299	Mola_mola
ENSAMXG00000006330	-	81	63.902	ENSMODG00000015891	RNPS1	79	73.859	Monodelphis_domestica
ENSAMXG00000006330	-	82	73.684	ENSMALG00000013384	-	85	71.491	Monopterus_albus
ENSAMXG00000006330	-	84	68.750	ENSMUSG00000034681	Rnps1	85	75.417	Mus_musculus
ENSAMXG00000006330	-	84	68.750	MGP_PahariEiJ_G0023498	Rnps1	85	75.417	Mus_pahari
ENSAMXG00000006330	-	84	68.750	MGP_SPRETEiJ_G0022092	Rnps1	85	75.417	Mus_spretus
ENSAMXG00000006330	-	81	65.686	ENSMLUG00000016808	RNPS1	79	75.417	Myotis_lucifugus
ENSAMXG00000006330	-	84	68.750	ENSNGAG00000023702	Rnps1	85	75.417	Nannospalax_galili
ENSAMXG00000006330	-	81	70.707	ENSNBRG00000023437	RNPS1	77	76.636	Neolamprologus_brichardi
ENSAMXG00000006330	-	87	67.470	ENSNLEG00000009243	RNPS1	88	75.229	Nomascus_leucogenys
ENSAMXG00000006330	-	84	68.201	ENSMEUG00000008882	RNPS1	79	75.000	Notamacropus_eugenii
ENSAMXG00000006330	-	81	72.549	ENSOPRG00000016422	RNPS1	79	76.250	Ochotona_princeps
ENSAMXG00000006330	-	81	73.500	ENSONIG00000019627	-	83	77.056	Oreochromis_niloticus
ENSAMXG00000006330	-	80	61.111	ENSORLG00015000305	-	82	71.739	Oryzias_latipes_hsok
ENSAMXG00000006330	-	80	65.482	ENSORLG00015011183	RNPS1	73	77.056	Oryzias_latipes_hsok
ENSAMXG00000006330	-	84	64.286	ENSPPAG00000037836	-	86	71.220	Pan_paniscus
ENSAMXG00000006330	-	87	64.777	ENSPPAG00000011845	RNPS1	86	70.833	Pan_paniscus
ENSAMXG00000006330	-	84	69.167	ENSPPRG00000011255	RNPS1	85	75.833	Panthera_pardus
ENSAMXG00000006330	-	55	70.861	ENSPTIG00000015643	RNPS1	54	83.495	Panthera_tigris_altaica
ENSAMXG00000006330	-	85	66.197	ENSPTRG00000046326	-	91	64.957	Pan_troglodytes
ENSAMXG00000006330	-	84	68.750	ENSPTRG00000031310	RNPS1	85	75.417	Pan_troglodytes
ENSAMXG00000006330	-	84	68.750	ENSPANG00000015748	RNPS1	85	75.417	Papio_anubis
ENSAMXG00000006330	-	82	48.544	ENSPANG00000033576	-	88	50.435	Papio_anubis
ENSAMXG00000006330	-	82	63.404	ENSPKIG00000023465	RNPS1	83	72.881	Paramormyrops_kingsleyae
ENSAMXG00000006330	-	81	69.608	ENSPSIG00000006048	RNPS1	78	76.250	Pelodiscus_sinensis
ENSAMXG00000006330	-	84	68.750	ENSPEMG00000012797	Rnps1	85	75.417	Peromyscus_maniculatus_bairdii
ENSAMXG00000006330	-	55	72.848	ENSPCIG00000016114	-	65	78.358	Phascolarctos_cinereus
ENSAMXG00000006330	-	84	68.333	ENSPCIG00000025012	RNPS1	85	75.000	Phascolarctos_cinereus
ENSAMXG00000006330	-	81	67.327	ENSPFOG00000009978	RNPS1	77	77.064	Poecilia_formosa
ENSAMXG00000006330	-	81	67.327	ENSPLAG00000009343	RNPS1	77	77.064	Poecilia_latipinna
ENSAMXG00000006330	-	81	67.327	ENSPMEG00000008552	RNPS1	77	77.064	Poecilia_mexicana
ENSAMXG00000006330	-	81	67.327	ENSPREG00000001843	RNPS1	77	77.064	Poecilia_reticulata
ENSAMXG00000006330	-	81	63.235	ENSPCAG00000004514	RNPS1	79	73.333	Procavia_capensis
ENSAMXG00000006330	-	84	68.750	ENSPCOG00000005478	RNPS1	97	66.667	Propithecus_coquereli
ENSAMXG00000006330	-	84	68.619	ENSPVAG00000005105	RNPS1	79	75.417	Pteropus_vampyrus
ENSAMXG00000006330	-	82	70.259	ENSPNYG00000000585	RNPS1	82	77.155	Pundamilia_nyererei
ENSAMXG00000006330	-	100	97.473	ENSPNAG00000025479	RNPS1	100	97.473	Pygocentrus_nattereri
ENSAMXG00000006330	-	81	65.686	ENSRNOG00000008703	Rnps1	79	75.417	Rattus_norvegicus
ENSAMXG00000006330	-	91	64.000	ENSRNOG00000027239	AABR07037800.1	79	70.464	Rattus_norvegicus
ENSAMXG00000006330	-	84	68.750	ENSRBIG00000038965	-	88	75.417	Rhinopithecus_bieti
ENSAMXG00000006330	-	84	68.750	ENSRROG00000041252	RNPS1	85	75.417	Rhinopithecus_roxellana
ENSAMXG00000006330	-	84	68.750	ENSSBOG00000027927	RNPS1	85	75.417	Saimiri_boliviensis_boliviensis
ENSAMXG00000006330	-	84	68.201	ENSSHAG00000016951	RNPS1	79	75.000	Sarcophilus_harrisii
ENSAMXG00000006330	-	82	75.319	ENSSFOG00015022746	RNPS1	85	74.468	Scleropages_formosus
ENSAMXG00000006330	-	95	73.840	ENSSFOG00015019341	-	73	88.614	Scleropages_formosus
ENSAMXG00000006330	-	82	72.727	ENSSMAG00000016933	RNPS1	82	74.459	Scophthalmus_maximus
ENSAMXG00000006330	-	81	66.995	ENSSDUG00000011453	RNPS1	83	73.077	Seriola_dumerili
ENSAMXG00000006330	-	88	61.135	ENSSLDG00000021341	RNPS1	80	74.545	Seriola_lalandi_dorsalis
ENSAMXG00000006330	-	84	69.874	ENSSPUG00000016588	RNPS1	78	77.083	Sphenodon_punctatus
ENSAMXG00000006330	-	81	66.176	ENSSSCG00000008048	RNPS1	79	75.833	Sus_scrofa
ENSAMXG00000006330	-	84	70.711	ENSTGUG00000003237	RNPS1	85	77.917	Taeniopygia_guttata
ENSAMXG00000006330	-	82	65.678	ENSTRUG00000008602	RNPS1	83	71.610	Takifugu_rubripes
ENSAMXG00000006330	-	80	66.169	ENSTNIG00000007411	-	84	72.385	Tetraodon_nigroviridis
ENSAMXG00000006330	-	82	62.319	ENSTNIG00000009753	RNPS1	81	72.458	Tetraodon_nigroviridis
ENSAMXG00000006330	-	81	65.686	ENSTBEG00000009098	RNPS1	88	75.417	Tupaia_belangeri
ENSAMXG00000006330	-	81	65.686	ENSTTRG00000008220	RNPS1	79	75.417	Tursiops_truncatus
ENSAMXG00000006330	-	84	65.714	ENSUAMG00000004462	RNPS1	88	75.417	Ursus_americanus
ENSAMXG00000006330	-	81	65.686	ENSUMAG00000022327	RNPS1	79	75.417	Ursus_maritimus
ENSAMXG00000006330	-	81	64.706	ENSVPAG00000009976	RNPS1	79	67.917	Vicugna_pacos
ENSAMXG00000006330	-	81	65.686	ENSVVUG00000009244	RNPS1	79	75.417	Vulpes_vulpes
ENSAMXG00000006330	-	82	69.528	ENSXMAG00000004827	RNPS1	82	76.824	Xiphophorus_maculatus