EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000006465 (Gene tree)
Gene ID: 103023001
Gene Symbol: parp1
Alias: si:dkey-206f10.3|wu:fc60f12|zgc:110092
Full Name: poly(ADP-ribose) polymerase 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 20226 bases
Position: chr3:55406727-55426952
Accession: 103023001
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000006642	PARP	PF00644.20	5.1e-74	1	1
ENSAMXP00000036210	PARP	PF00644.20	2.2e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000032513	-	6438	-	ENSAMXP00000036210	995 (aa)	-	-
ENSAMXT00000006642	-	6041	XM_007253916	ENSAMXP00000006642	1021 (aa)	XP_007253978	W5KGD0

Gene Model

Click here to download ENSAMXG00000006465's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03410	Base excision repair	KEGG
amex04210	Apoptosis	KEGG
amex04217	Necroptosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000006465's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000006465	parp1	51	40.901	ENSAMXG00000004311	parp2	82	40.901

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000006465	parp1	100	69.620	ENSG00000143799	PARP1	100	69.366	Homo_sapiens
ENSAMXG00000006465	parp1	100	82.877	ENSAPOG00000006414	parp1	100	81.996	Acanthochromis_polyacanthus
ENSAMXG00000006465	parp1	99	68.889	ENSAMEG00000014451	PARP1	100	68.788	Ailuropoda_melanoleuca
ENSAMXG00000006465	parp1	100	82.681	ENSACIG00000005651	parp1	100	81.978	Amphilophus_citrinellus
ENSAMXG00000006465	parp1	100	83.072	ENSAOCG00000021005	parp1	100	82.192	Amphiprion_ocellaris
ENSAMXG00000006465	parp1	100	82.975	ENSAPEG00000004784	parp1	100	82.192	Amphiprion_percula
ENSAMXG00000006465	parp1	100	82.290	ENSATEG00000010457	parp1	100	81.311	Anabas_testudineus
ENSAMXG00000006465	parp1	87	72.185	ENSAPLG00000014039	PARP1	99	71.396	Anas_platyrhynchos
ENSAMXG00000006465	parp1	99	70.519	ENSACAG00000006189	PARP1	99	70.796	Anolis_carolinensis
ENSAMXG00000006465	parp1	100	69.268	ENSANAG00000032699	PARP1	100	69.171	Aotus_nancymaae
ENSAMXG00000006465	parp1	100	83.170	ENSACLG00000015489	parp1	100	82.468	Astatotilapia_calliptera
ENSAMXG00000006465	parp1	100	66.602	ENSBTAG00000000837	PARP1	100	66.602	Bos_taurus
ENSAMXG00000006465	parp1	91	43.825	WBGene00004049	parp-1	100	46.743	Caenorhabditis_elegans
ENSAMXG00000006465	parp1	100	68.744	ENSCJAG00000012831	PARP1	100	68.217	Callithrix_jacchus
ENSAMXG00000006465	parp1	96	68.330	ENSCAFG00000016089	PARP1	100	68.432	Canis_familiaris
ENSAMXG00000006465	parp1	100	68.683	ENSCAFG00020001660	PARP1	100	68.780	Canis_lupus_dingo
ENSAMXG00000006465	parp1	100	67.415	ENSCHIG00000018072	PARP1	100	67.317	Capra_hircus
ENSAMXG00000006465	parp1	99	70.238	ENSTSYG00000003699	PARP1	99	70.141	Carlito_syrichta
ENSAMXG00000006465	parp1	99	57.895	ENSCAPG00000011113	-	99	57.592	Cavia_aperea
ENSAMXG00000006465	parp1	100	69.006	ENSCPOG00000015643	-	100	68.908	Cavia_porcellus
ENSAMXG00000006465	parp1	100	69.133	ENSCCAG00000033484	PARP1	100	68.605	Cebus_capucinus
ENSAMXG00000006465	parp1	100	68.939	ENSCATG00000038981	PARP1	100	68.585	Cercocebus_atys
ENSAMXG00000006465	parp1	99	69.148	ENSCLAG00000006637	PARP1	99	68.695	Chinchilla_lanigera
ENSAMXG00000006465	parp1	61	90.625	ENSCHOG00000003539	PARP1	53	90.625	Choloepus_hoffmanni
ENSAMXG00000006465	parp1	99	72.004	ENSCPBG00000011958	PARP1	99	72.299	Chrysemys_picta_bellii
ENSAMXG00000006465	parp1	99	68.560	ENSCANG00000041340	PARP1	100	68.089	Colobus_angolensis_palliatus
ENSAMXG00000006465	parp1	100	68.713	ENSCGRG00001020559	Parp1	100	68.519	Cricetulus_griseus_chok1gshd
ENSAMXG00000006465	parp1	99	68.629	ENSCGRG00000004864	Parp1	100	68.426	Cricetulus_griseus_crigri
ENSAMXG00000006465	parp1	98	84.393	ENSCSEG00000020665	parp1	100	84.393	Cynoglossus_semilaevis
ENSAMXG00000006465	parp1	99	81.015	ENSCVAG00000021372	parp1	99	81.237	Cyprinodon_variegatus
ENSAMXG00000006465	parp1	100	86.582	ENSDARG00000019529	parp1	100	86.092	Danio_rerio
ENSAMXG00000006465	parp1	99	67.447	ENSDNOG00000012059	PARP1	100	67.650	Dasypus_novemcinctus
ENSAMXG00000006465	parp1	99	67.378	ENSDORG00000005234	Parp1	100	67.276	Dipodomys_ordii
ENSAMXG00000006465	parp1	99	40.846	FBgn0010247	Parp	99	40.371	Drosophila_melanogaster
ENSAMXG00000006465	parp1	83	90.625	ENSETEG00000013254	PARP1	81	90.625	Echinops_telfairi
ENSAMXG00000006465	parp1	97	58.539	ENSEBUG00000005820	parp1	100	58.417	Eptatretus_burgeri
ENSAMXG00000006465	parp1	98	68.651	ENSEASG00005013275	PARP1	99	68.012	Equus_asinus_asinus
ENSAMXG00000006465	parp1	100	68.488	ENSECAG00000019207	PARP1	100	68.488	Equus_caballus
ENSAMXG00000006465	parp1	100	66.796	ENSEEUG00000012253	PARP1	100	66.179	Erinaceus_europaeus
ENSAMXG00000006465	parp1	99	83.299	ENSELUG00000017336	parp1	99	82.469	Esox_lucius
ENSAMXG00000006465	parp1	97	68.384	ENSFCAG00000005777	PARP1	100	68.485	Felis_catus
ENSAMXG00000006465	parp1	99	72.126	ENSFALG00000011578	PARP1	100	72.431	Ficedula_albicollis
ENSAMXG00000006465	parp1	99	67.781	ENSFDAG00000017662	PARP1	100	67.208	Fukomys_damarensis
ENSAMXG00000006465	parp1	100	82.307	ENSFHEG00000001117	parp1	100	81.427	Fundulus_heteroclitus
ENSAMXG00000006465	parp1	99	79.138	ENSGMOG00000014929	parp1	100	78.452	Gadus_morhua
ENSAMXG00000006465	parp1	99	73.084	ENSGALG00000009228	PARP1	99	72.495	Gallus_gallus
ENSAMXG00000006465	parp1	100	81.507	ENSGAFG00000010450	parp1	100	81.623	Gambusia_affinis
ENSAMXG00000006465	parp1	100	81.055	ENSGACG00000011280	parp1	100	80.469	Gasterosteus_aculeatus
ENSAMXG00000006465	parp1	99	71.780	ENSGAGG00000010066	PARP1	99	71.878	Gopherus_agassizii
ENSAMXG00000006465	parp1	100	69.523	ENSGGOG00000006308	PARP1	100	69.171	Gorilla_gorilla
ENSAMXG00000006465	parp1	100	83.382	ENSHBUG00000010490	parp1	100	82.975	Haplochromis_burtoni
ENSAMXG00000006465	parp1	99	68.528	ENSHGLG00000003992	PARP1	93	68.325	Heterocephalus_glaber_female
ENSAMXG00000006465	parp1	99	68.528	ENSHGLG00100016965	PARP1	93	68.325	Heterocephalus_glaber_male
ENSAMXG00000006465	parp1	100	79.512	ENSHCOG00000011619	parp1	100	79.590	Hippocampus_comes
ENSAMXG00000006465	parp1	100	87.342	ENSIPUG00000020250	parp1	100	87.634	Ictalurus_punctatus
ENSAMXG00000006465	parp1	100	69.844	ENSSTOG00000016000	PARP1	100	69.073	Ictidomys_tridecemlineatus
ENSAMXG00000006465	parp1	100	68.390	ENSJJAG00000023497	Parp1	100	67.802	Jaculus_jaculus
ENSAMXG00000006465	parp1	100	81.623	ENSKMAG00000011627	parp1	100	81.427	Kryptolebias_marmoratus
ENSAMXG00000006465	parp1	100	82.958	ENSLBEG00000013376	parp1	100	81.881	Labrus_bergylta
ENSAMXG00000006465	parp1	99	56.250	ENSLACG00000002735	PARP1	99	56.207	Latimeria_chalumnae
ENSAMXG00000006465	parp1	100	81.232	ENSLOCG00000015798	parp1	100	81.427	Lepisosteus_oculatus
ENSAMXG00000006465	parp1	96	67.378	ENSLAFG00000007830	PARP1	100	67.581	Loxodonta_africana
ENSAMXG00000006465	parp1	100	68.841	ENSMFAG00000002526	PARP1	100	68.488	Macaca_fascicularis
ENSAMXG00000006465	parp1	100	68.939	ENSMMUG00000021820	PARP1	100	68.585	Macaca_mulatta
ENSAMXG00000006465	parp1	100	68.939	ENSMNEG00000034074	PARP1	100	68.585	Macaca_nemestrina
ENSAMXG00000006465	parp1	100	67.023	ENSMLEG00000012344	PARP1	100	66.829	Mandrillus_leucophaeus
ENSAMXG00000006465	parp1	100	82.192	ENSMAMG00000020652	parp1	100	81.115	Mastacembelus_armatus
ENSAMXG00000006465	parp1	100	83.578	ENSMZEG00005016907	parp1	100	83.170	Maylandia_zebra
ENSAMXG00000006465	parp1	99	73.014	ENSMGAG00000007760	PARP1	100	73.116	Meleagris_gallopavo
ENSAMXG00000006465	parp1	100	68.324	ENSMAUG00000008306	Parp1	100	68.324	Mesocricetus_auratus
ENSAMXG00000006465	parp1	99	66.438	ENSMICG00000017076	PARP1	99	65.947	Microcebus_murinus
ENSAMXG00000006465	parp1	100	68.519	ENSMOCG00000014315	Parp1	100	68.744	Microtus_ochrogaster
ENSAMXG00000006465	parp1	100	81.073	ENSMMOG00000015966	parp1	100	80.174	Mola_mola
ENSAMXG00000006465	parp1	99	70.098	ENSMODG00000006076	PARP1	99	70.490	Monodelphis_domestica
ENSAMXG00000006465	parp1	100	79.354	ENSMALG00000004057	parp1	100	78.474	Monopterus_albus
ENSAMXG00000006465	parp1	100	68.416	MGP_CAROLIEiJ_G0014978	Parp1	100	75.510	Mus_caroli
ENSAMXG00000006465	parp1	100	68.319	ENSMUSG00000026496	Parp1	99	75.510	Mus_musculus
ENSAMXG00000006465	parp1	100	68.319	MGP_SPRETEiJ_G0015777	Parp1	100	75.510	Mus_spretus
ENSAMXG00000006465	parp1	100	69.268	ENSMPUG00000004585	PARP1	100	68.976	Mustela_putorius_furo
ENSAMXG00000006465	parp1	95	58.836	ENSMLUG00000012285	PARP1	85	71.957	Myotis_lucifugus
ENSAMXG00000006465	parp1	100	68.707	ENSNGAG00000003885	Parp1	100	68.519	Nannospalax_galili
ENSAMXG00000006465	parp1	100	82.975	ENSNBRG00000017434	parp1	100	82.272	Neolamprologus_brichardi
ENSAMXG00000006465	parp1	97	71.394	ENSNLEG00000013905	PARP1	100	71.394	Nomascus_leucogenys
ENSAMXG00000006465	parp1	67	79.701	ENSMEUG00000007720	PARP1	86	79.701	Notamacropus_eugenii
ENSAMXG00000006465	parp1	100	69.561	ENSOPRG00000011722	PARP1	100	69.463	Ochotona_princeps
ENSAMXG00000006465	parp1	100	67.802	ENSODEG00000007424	PARP1	100	67.317	Octodon_degus
ENSAMXG00000006465	parp1	100	82.863	ENSONIG00000013486	parp1	100	82.779	Oreochromis_niloticus
ENSAMXG00000006465	parp1	99	71.240	ENSOANG00000001488	PARP1	100	71.240	Ornithorhynchus_anatinus
ENSAMXG00000006465	parp1	100	70.078	ENSOCUG00000017820	PARP1	100	69.883	Oryctolagus_cuniculus
ENSAMXG00000006465	parp1	100	80.137	ENSORLG00000013691	parp1	100	79.843	Oryzias_latipes
ENSAMXG00000006465	parp1	99	80.162	ENSORLG00020001074	parp1	99	80.182	Oryzias_latipes_hni
ENSAMXG00000006465	parp1	100	80.528	ENSORLG00015007090	parp1	100	79.941	Oryzias_latipes_hsok
ENSAMXG00000006465	parp1	100	68.976	ENSOGAG00000016206	PARP1	100	68.683	Otolemur_garnettii
ENSAMXG00000006465	parp1	100	67.186	ENSOARG00000000811	PARP1	100	67.186	Ovis_aries
ENSAMXG00000006465	parp1	100	69.328	ENSPPAG00000040862	PARP1	100	69.073	Pan_paniscus
ENSAMXG00000006465	parp1	96	68.293	ENSPPRG00000003528	PARP1	100	68.191	Panthera_pardus
ENSAMXG00000006465	parp1	93	57.529	ENSPTIG00000009102	PARP1	98	57.203	Panthera_tigris_altaica
ENSAMXG00000006465	parp1	100	69.328	ENSPTRG00000002049	PARP1	100	69.073	Pan_troglodytes
ENSAMXG00000006465	parp1	100	68.969	ENSPANG00000011198	PARP1	100	68.713	Papio_anubis
ENSAMXG00000006465	parp1	100	82.566	ENSPKIG00000006039	parp1	100	82.076	Paramormyrops_kingsleyae
ENSAMXG00000006465	parp1	99	71.023	ENSPSIG00000016374	PARP1	100	70.517	Pelodiscus_sinensis
ENSAMXG00000006465	parp1	100	78.634	ENSPMGG00000008936	parp1	100	78.439	Periophthalmus_magnuspinnatus
ENSAMXG00000006465	parp1	100	68.744	ENSPEMG00000020230	Parp1	100	68.616	Peromyscus_maniculatus_bairdii
ENSAMXG00000006465	parp1	99	69.902	ENSPCIG00000006436	PARP1	99	72.198	Phascolarctos_cinereus
ENSAMXG00000006465	parp1	100	81.329	ENSPFOG00000002342	parp1	100	81.329	Poecilia_formosa
ENSAMXG00000006465	parp1	100	81.898	ENSPLAG00000000909	parp1	100	81.898	Poecilia_latipinna
ENSAMXG00000006465	parp1	100	82.094	ENSPMEG00000013979	parp1	100	82.209	Poecilia_mexicana
ENSAMXG00000006465	parp1	100	81.996	ENSPREG00000001114	parp1	100	82.111	Poecilia_reticulata
ENSAMXG00000006465	parp1	99	69.106	ENSPPYG00000000164	PARP1	100	68.737	Pongo_abelii
ENSAMXG00000006465	parp1	59	77.778	ENSPCAG00000005558	-	56	77.778	Procavia_capensis
ENSAMXG00000006465	parp1	99	69.804	ENSPCOG00000016918	PARP1	99	69.578	Propithecus_coquereli
ENSAMXG00000006465	parp1	88	81.757	ENSPVAG00000005543	PARP1	86	76.415	Pteropus_vampyrus
ENSAMXG00000006465	parp1	100	83.170	ENSPNYG00000009702	parp1	100	82.468	Pundamilia_nyererei
ENSAMXG00000006465	parp1	100	90.714	ENSPNAG00000002787	parp1	100	90.616	Pygocentrus_nattereri
ENSAMXG00000006465	parp1	100	68.647	ENSRNOG00000003084	Parp1	100	68.549	Rattus_norvegicus
ENSAMXG00000006465	parp1	100	68.939	ENSRBIG00000044893	PARP1	100	68.585	Rhinopithecus_bieti
ENSAMXG00000006465	parp1	99	50.682	ENSRROG00000040615	-	98	58.247	Rhinopithecus_roxellana
ENSAMXG00000006465	parp1	100	68.939	ENSRROG00000029280	PARP1	100	68.585	Rhinopithecus_roxellana
ENSAMXG00000006465	parp1	100	68.976	ENSSBOG00000010144	PARP1	100	68.895	Saimiri_boliviensis_boliviensis
ENSAMXG00000006465	parp1	96	70.092	ENSSHAG00000001991	PARP1	100	70.804	Sarcophilus_harrisii
ENSAMXG00000006465	parp1	100	83.741	ENSSFOG00015020017	parp1	100	83.056	Scleropages_formosus
ENSAMXG00000006465	parp1	100	81.311	ENSSMAG00000013799	parp1	100	80.431	Scophthalmus_maximus
ENSAMXG00000006465	parp1	100	82.779	ENSSDUG00000016626	parp1	100	81.898	Seriola_dumerili
ENSAMXG00000006465	parp1	100	82.583	ENSSLDG00000006384	parp1	100	81.703	Seriola_lalandi_dorsalis
ENSAMXG00000006465	parp1	52	76.389	ENSSARG00000009436	-	58	76.389	Sorex_araneus
ENSAMXG00000006465	parp1	100	67.123	ENSSPUG00000007790	PARP1	100	67.417	Sphenodon_punctatus
ENSAMXG00000006465	parp1	100	80.901	ENSSPAG00000019074	parp1	100	81.750	Stegastes_partitus
ENSAMXG00000006465	parp1	100	68.488	ENSSSCG00000023660	PARP1	100	68.000	Sus_scrofa
ENSAMXG00000006465	parp1	98	72.247	ENSTGUG00000004260	-	100	72.137	Taeniopygia_guttata
ENSAMXG00000006465	parp1	100	80.509	ENSTRUG00000014490	parp1	100	79.432	Takifugu_rubripes
ENSAMXG00000006465	parp1	100	80.739	ENSTNIG00000016384	parp1	100	79.961	Tetraodon_nigroviridis
ENSAMXG00000006465	parp1	85	73.846	ENSTBEG00000002364	PARP1	88	73.846	Tupaia_belangeri
ENSAMXG00000006465	parp1	100	64.195	ENSTTRG00000000188	PARP1	100	64.293	Tursiops_truncatus
ENSAMXG00000006465	parp1	99	69.106	ENSUAMG00000014388	PARP1	100	69.004	Ursus_americanus
ENSAMXG00000006465	parp1	96	62.727	ENSUMAG00000014555	PARP1	99	62.048	Ursus_maritimus
ENSAMXG00000006465	parp1	79	82.632	ENSVPAG00000011411	PARP1	83	77.559	Vicugna_pacos
ENSAMXG00000006465	parp1	96	68.330	ENSVVUG00000001655	PARP1	100	68.432	Vulpes_vulpes
ENSAMXG00000006465	parp1	99	70.455	ENSXETG00000022610	parp1	99	70.965	Xenopus_tropicalis
ENSAMXG00000006465	parp1	100	81.409	ENSXMAG00000003632	parp1	100	81.525	Xiphophorus_maculatus