EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000006756 (Gene tree)
Gene ID: 103025497
Gene Symbol: prpf4
Alias: mg:ab03a02|zgc:65943
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 11849 bases
Position: chrAPWO02000139.1:734701-746549
Accession: 103025497
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000006932	PRP4	PF08799.11	5.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000006932	-	1422	XM_022667805	ENSAMXP00000006932	473 (aa)	XP_022523526	W5KH70

Gene Model

Click here to download ENSAMXG00000006756's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000006756's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000006756	prpf4	54	30.252	ENSAMXG00000005755	wdr3	53	30.252
ENSAMXG00000006756	prpf4	58	36.111	ENSAMXG00000042589	tbl3	64	36.111
ENSAMXG00000006756	prpf4	59	30.328	ENSAMXG00000024703	poc1a	81	30.328

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000006756	prpf4	99	73.663	ENSG00000136875	PRPF4	97	61.228	Homo_sapiens
ENSAMXG00000006756	prpf4	94	73.706	ENSAPOG00000014132	prpf4	95	64.768	Acanthochromis_polyacanthus
ENSAMXG00000006756	prpf4	99	73.465	ENSAMEG00000013048	PRPF4	95	62.380	Ailuropoda_melanoleuca
ENSAMXG00000006756	prpf4	100	74.118	ENSACIG00000005579	prpf4	100	60.837	Amphilophus_citrinellus
ENSAMXG00000006756	prpf4	100	73.651	ENSAOCG00000005457	prpf4	100	73.444	Amphiprion_ocellaris
ENSAMXG00000006756	prpf4	100	73.333	ENSAPEG00000000776	prpf4	100	61.217	Amphiprion_percula
ENSAMXG00000006756	prpf4	100	73.922	ENSATEG00000023013	prpf4	100	63.118	Anabas_testudineus
ENSAMXG00000006756	prpf4	99	73.069	ENSAPLG00000006534	PRPF4	94	61.804	Anas_platyrhynchos
ENSAMXG00000006756	prpf4	99	73.031	ENSACAG00000015110	PRPF4	97	61.450	Anolis_carolinensis
ENSAMXG00000006756	prpf4	99	73.465	ENSANAG00000022464	PRPF4	93	62.380	Aotus_nancymaae
ENSAMXG00000006756	prpf4	100	73.529	ENSACLG00000019031	prpf4	100	63.118	Astatotilapia_calliptera
ENSAMXG00000006756	prpf4	99	73.465	ENSBTAG00000004571	PRPF4	97	62.380	Bos_taurus
ENSAMXG00000006756	prpf4	93	39.666	WBGene00007972	prp-4	88	36.444	Caenorhabditis_elegans
ENSAMXG00000006756	prpf4	99	73.465	ENSCJAG00000017856	PRPF4	97	62.380	Callithrix_jacchus
ENSAMXG00000006756	prpf4	99	73.465	ENSCAFG00000003224	PRPF4	94	62.380	Canis_familiaris
ENSAMXG00000006756	prpf4	99	73.465	ENSCAFG00020022637	PRPF4	97	62.380	Canis_lupus_dingo
ENSAMXG00000006756	prpf4	99	73.267	ENSCHIG00000024648	-	97	62.188	Capra_hircus
ENSAMXG00000006756	prpf4	99	73.267	ENSTSYG00000010366	PRPF4	97	62.188	Carlito_syrichta
ENSAMXG00000006756	prpf4	79	65.693	ENSCAPG00000008935	PRPF4	92	58.765	Cavia_aperea
ENSAMXG00000006756	prpf4	99	68.317	ENSCPOG00000014729	-	97	58.157	Cavia_porcellus
ENSAMXG00000006756	prpf4	99	73.069	ENSCPOG00000010747	-	97	61.996	Cavia_porcellus
ENSAMXG00000006756	prpf4	99	73.663	ENSCCAG00000028990	PRPF4	97	62.572	Cebus_capucinus
ENSAMXG00000006756	prpf4	99	73.465	ENSCATG00000021552	PRPF4	97	62.380	Cercocebus_atys
ENSAMXG00000006756	prpf4	99	73.465	ENSCLAG00000013448	PRPF4	97	62.188	Chinchilla_lanigera
ENSAMXG00000006756	prpf4	88	73.230	ENSCHOG00000007233	PRPF4	100	63.034	Choloepus_hoffmanni
ENSAMXG00000006756	prpf4	100	72.387	ENSCPBG00000019136	PRPF4	73	61.759	Chrysemys_picta_bellii
ENSAMXG00000006756	prpf4	99	53.635	ENSCING00000001299	-	88	48.626	Ciona_intestinalis
ENSAMXG00000006756	prpf4	99	52.860	ENSCSAVG00000009178	-	91	47.134	Ciona_savignyi
ENSAMXG00000006756	prpf4	99	73.465	ENSCANG00000003246	PRPF4	97	62.380	Colobus_angolensis_palliatus
ENSAMXG00000006756	prpf4	99	73.663	ENSCGRG00001016992	Prpf4	97	71.138	Cricetulus_griseus_chok1gshd
ENSAMXG00000006756	prpf4	99	73.663	ENSCGRG00000017560	Prpf4	97	71.138	Cricetulus_griseus_crigri
ENSAMXG00000006756	prpf4	99	73.267	ENSCSEG00000020451	prpf4	91	64.179	Cynoglossus_semilaevis
ENSAMXG00000006756	prpf4	100	82.051	ENSDARG00000067639	prpf4	100	68.451	Danio_rerio
ENSAMXG00000006756	prpf4	99	73.465	ENSDNOG00000013203	PRPF4	97	62.380	Dasypus_novemcinctus
ENSAMXG00000006756	prpf4	99	73.069	ENSDORG00000026275	Prpf4	97	62.188	Dipodomys_ordii
ENSAMXG00000006756	prpf4	99	47.091	FBgn0036733	U4-U6-60K	99	40.885	Drosophila_melanogaster
ENSAMXG00000006756	prpf4	99	73.861	ENSETEG00000020389	PRPF4	97	62.572	Echinops_telfairi
ENSAMXG00000006756	prpf4	99	62.162	ENSEBUG00000015229	prpf4	84	59.441	Eptatretus_burgeri
ENSAMXG00000006756	prpf4	99	73.465	ENSEASG00005022678	PRPF4	97	62.380	Equus_asinus_asinus
ENSAMXG00000006756	prpf4	99	73.465	ENSECAG00000007072	PRPF4	97	62.380	Equus_caballus
ENSAMXG00000006756	prpf4	70	68.201	ENSEEUG00000007480	PRPF4	96	48.993	Erinaceus_europaeus
ENSAMXG00000006756	prpf4	100	81.657	ENSELUG00000007510	prpf4	100	68.642	Esox_lucius
ENSAMXG00000006756	prpf4	99	73.465	ENSFCAG00000005514	PRPF4	97	62.380	Felis_catus
ENSAMXG00000006756	prpf4	86	69.457	ENSFALG00000005423	PRPF4	85	62.946	Ficedula_albicollis
ENSAMXG00000006756	prpf4	99	73.663	ENSFDAG00000005839	PRPF4	97	62.572	Fukomys_damarensis
ENSAMXG00000006756	prpf4	100	72.941	ENSFHEG00000001300	prpf4	100	61.217	Fundulus_heteroclitus
ENSAMXG00000006756	prpf4	99	73.123	ENSGALG00000008857	PRPF4	94	62.069	Gallus_gallus
ENSAMXG00000006756	prpf4	91	76.364	ENSGAFG00000012164	prpf4	68	76.364	Gambusia_affinis
ENSAMXG00000006756	prpf4	100	65.882	ENSGACG00000015476	prpf4	100	59.231	Gasterosteus_aculeatus
ENSAMXG00000006756	prpf4	100	72.584	ENSGAGG00000025029	PRPF4	94	61.759	Gopherus_agassizii
ENSAMXG00000006756	prpf4	99	73.663	ENSGGOG00000006943	PRPF4	97	61.228	Gorilla_gorilla
ENSAMXG00000006756	prpf4	100	73.333	ENSHBUG00000000562	prpf4	100	61.787	Haplochromis_burtoni
ENSAMXG00000006756	prpf4	99	58.918	ENSHGLG00000003838	-	97	58.717	Heterocephalus_glaber_female
ENSAMXG00000006756	prpf4	95	61.807	ENSHGLG00000016628	-	95	60.297	Heterocephalus_glaber_female
ENSAMXG00000006756	prpf4	99	73.465	ENSHGLG00000015191	PRPF4	97	70.423	Heterocephalus_glaber_female
ENSAMXG00000006756	prpf4	99	58.918	ENSHGLG00100005571	-	97	58.717	Heterocephalus_glaber_male
ENSAMXG00000006756	prpf4	100	83.037	ENSIPUG00000017956	PRPF4	100	69.981	Ictalurus_punctatus
ENSAMXG00000006756	prpf4	99	73.267	ENSSTOG00000027833	PRPF4	97	67.073	Ictidomys_tridecemlineatus
ENSAMXG00000006756	prpf4	99	73.267	ENSJJAG00000008838	Prpf4	97	70.080	Jaculus_jaculus
ENSAMXG00000006756	prpf4	100	73.922	ENSKMAG00000013236	prpf4	100	61.787	Kryptolebias_marmoratus
ENSAMXG00000006756	prpf4	100	73.425	ENSLBEG00000020611	prpf4	100	61.069	Labrus_bergylta
ENSAMXG00000006756	prpf4	100	70.334	ENSLACG00000016317	PRPF4	97	60.549	Latimeria_chalumnae
ENSAMXG00000006756	prpf4	100	78.698	ENSLOCG00000000581	prpf4	100	66.539	Lepisosteus_oculatus
ENSAMXG00000006756	prpf4	99	73.465	ENSLAFG00000018225	PRPF4	97	62.380	Loxodonta_africana
ENSAMXG00000006756	prpf4	99	73.267	ENSMFAG00000039397	PRPF4	97	62.188	Macaca_fascicularis
ENSAMXG00000006756	prpf4	99	73.465	ENSMMUG00000005844	PRPF4	97	68.107	Macaca_mulatta
ENSAMXG00000006756	prpf4	99	67.941	ENSMNEG00000033737	PRPF4	87	54.681	Macaca_nemestrina
ENSAMXG00000006756	prpf4	99	73.465	ENSMLEG00000040284	PRPF4	97	62.380	Mandrillus_leucophaeus
ENSAMXG00000006756	prpf4	99	73.373	ENSMAMG00000020141	prpf4	99	61.759	Mastacembelus_armatus
ENSAMXG00000006756	prpf4	100	73.529	ENSMZEG00005023205	prpf4	100	63.118	Maylandia_zebra
ENSAMXG00000006756	prpf4	99	72.530	ENSMGAG00000001796	PRPF4	94	61.494	Meleagris_gallopavo
ENSAMXG00000006756	prpf4	99	73.663	ENSMAUG00000018022	Prpf4	97	62.380	Mesocricetus_auratus
ENSAMXG00000006756	prpf4	99	73.465	ENSMICG00000015022	PRPF4	97	62.380	Microcebus_murinus
ENSAMXG00000006756	prpf4	99	73.267	ENSMOCG00000018273	Prpf4	97	61.996	Microtus_ochrogaster
ENSAMXG00000006756	prpf4	99	73.465	ENSMMOG00000021177	prpf4	99	62.572	Mola_mola
ENSAMXG00000006756	prpf4	99	73.663	ENSMODG00000025096	-	94	62.380	Monodelphis_domestica
ENSAMXG00000006756	prpf4	99	73.663	ENSMODG00000004444	-	97	62.572	Monodelphis_domestica
ENSAMXG00000006756	prpf4	100	73.725	ENSMALG00000013624	prpf4	100	63.118	Monopterus_albus
ENSAMXG00000006756	prpf4	99	73.663	MGP_CAROLIEiJ_G0026078	Prpf4	97	62.380	Mus_caroli
ENSAMXG00000006756	prpf4	99	73.663	ENSMUSG00000066148	Prpf4	97	62.380	Mus_musculus
ENSAMXG00000006756	prpf4	99	73.861	MGP_PahariEiJ_G0028413	Prpf4	97	62.572	Mus_pahari
ENSAMXG00000006756	prpf4	99	73.663	MGP_SPRETEiJ_G0027042	Prpf4	97	62.380	Mus_spretus
ENSAMXG00000006756	prpf4	99	73.465	ENSMPUG00000007883	PRPF4	97	62.380	Mustela_putorius_furo
ENSAMXG00000006756	prpf4	99	73.861	ENSMLUG00000015309	-	94	62.764	Myotis_lucifugus
ENSAMXG00000006756	prpf4	99	72.475	ENSMLUG00000008626	-	94	61.804	Myotis_lucifugus
ENSAMXG00000006756	prpf4	99	73.706	ENSNGAG00000000468	Prpf4	97	73.706	Nannospalax_galili
ENSAMXG00000006756	prpf4	100	73.725	ENSNBRG00000007972	prpf4	100	61.597	Neolamprologus_brichardi
ENSAMXG00000006756	prpf4	99	73.465	ENSNLEG00000016647	PRPF4	97	62.380	Nomascus_leucogenys
ENSAMXG00000006756	prpf4	99	73.663	ENSMEUG00000013256	PRPF4	98	62.380	Notamacropus_eugenii
ENSAMXG00000006756	prpf4	99	73.069	ENSOPRG00000005302	PRPF4	97	62.188	Ochotona_princeps
ENSAMXG00000006756	prpf4	99	73.465	ENSODEG00000018147	PRPF4	97	62.380	Octodon_degus
ENSAMXG00000006756	prpf4	100	73.725	ENSONIG00000012671	prpf4	100	61.027	Oreochromis_niloticus
ENSAMXG00000006756	prpf4	99	73.267	ENSOCUG00000005046	PRPF4	97	62.380	Oryctolagus_cuniculus
ENSAMXG00000006756	prpf4	100	72.244	ENSORLG00000019641	prpf4	100	60.115	Oryzias_latipes
ENSAMXG00000006756	prpf4	100	72.244	ENSORLG00020019438	prpf4	100	60.115	Oryzias_latipes_hni
ENSAMXG00000006756	prpf4	100	72.047	ENSOMEG00000020941	prpf4	100	60.305	Oryzias_melastigma
ENSAMXG00000006756	prpf4	99	69.531	ENSOGAG00000007802	PRPF4	95	68.945	Otolemur_garnettii
ENSAMXG00000006756	prpf4	99	73.267	ENSOARG00000006319	PRPF4	94	62.188	Ovis_aries
ENSAMXG00000006756	prpf4	99	73.663	ENSPPAG00000041797	PRPF4	97	61.228	Pan_paniscus
ENSAMXG00000006756	prpf4	99	73.465	ENSPPRG00000014360	PRPF4	97	62.380	Panthera_pardus
ENSAMXG00000006756	prpf4	99	73.465	ENSPTIG00000009574	PRPF4	97	62.380	Panthera_tigris_altaica
ENSAMXG00000006756	prpf4	99	73.663	ENSPTRG00000021274	PRPF4	97	61.228	Pan_troglodytes
ENSAMXG00000006756	prpf4	99	73.267	ENSPANG00000025776	PRPF4	93	62.188	Papio_anubis
ENSAMXG00000006756	prpf4	100	81.854	ENSPKIG00000017259	prpf4	100	66.922	Paramormyrops_kingsleyae
ENSAMXG00000006756	prpf4	100	72.584	ENSPSIG00000010713	PRPF4	89	61.377	Pelodiscus_sinensis
ENSAMXG00000006756	prpf4	100	63.439	ENSPMGG00000000997	prpf4	98	62.648	Periophthalmus_magnuspinnatus
ENSAMXG00000006756	prpf4	99	73.663	ENSPEMG00000024115	Prpf4	97	62.380	Peromyscus_maniculatus_bairdii
ENSAMXG00000006756	prpf4	99	73.861	ENSPCIG00000003821	PRPF4	98	62.572	Phascolarctos_cinereus
ENSAMXG00000006756	prpf4	100	72.179	ENSPFOG00000013524	prpf4	100	76.061	Poecilia_formosa
ENSAMXG00000006756	prpf4	91	74.847	ENSPLAG00000011620	prpf4	100	72.424	Poecilia_latipinna
ENSAMXG00000006756	prpf4	93	76.292	ENSPMEG00000006813	prpf4	99	76.292	Poecilia_mexicana
ENSAMXG00000006756	prpf4	99	73.465	ENSPCAG00000002561	PRPF4	98	62.380	Procavia_capensis
ENSAMXG00000006756	prpf4	99	73.663	ENSPCOG00000011975	PRPF4	97	62.572	Propithecus_coquereli
ENSAMXG00000006756	prpf4	99	70.495	ENSPVAG00000004708	PRPF4	97	60.077	Pteropus_vampyrus
ENSAMXG00000006756	prpf4	100	73.529	ENSPNYG00000008013	prpf4	100	61.977	Pundamilia_nyererei
ENSAMXG00000006756	prpf4	100	85.799	ENSPNAG00000000697	prpf4	100	72.084	Pygocentrus_nattereri
ENSAMXG00000006756	prpf4	99	73.465	ENSRNOG00000014777	Prpf4	97	62.188	Rattus_norvegicus
ENSAMXG00000006756	prpf4	99	73.465	ENSRBIG00000040221	PRPF4	97	62.380	Rhinopithecus_bieti
ENSAMXG00000006756	prpf4	99	73.465	ENSRROG00000040240	PRPF4	97	62.380	Rhinopithecus_roxellana
ENSAMXG00000006756	prpf4	99	73.861	ENSSHAG00000017658	PRPF4	97	62.572	Sarcophilus_harrisii
ENSAMXG00000006756	prpf4	100	82.249	ENSSFOG00015008963	prpf4	100	68.069	Scleropages_formosus
ENSAMXG00000006756	prpf4	100	73.137	ENSSMAG00000008889	prpf4	100	61.977	Scophthalmus_maximus
ENSAMXG00000006756	prpf4	94	72.878	ENSSDUG00000022083	prpf4	90	64.346	Seriola_dumerili
ENSAMXG00000006756	prpf4	94	73.292	ENSSLDG00000008115	prpf4	90	64.768	Seriola_lalandi_dorsalis
ENSAMXG00000006756	prpf4	99	74.111	ENSSPUG00000015582	PRPF4	97	62.835	Sphenodon_punctatus
ENSAMXG00000006756	prpf4	100	67.446	ENSSPAG00000011286	prpf4	100	55.766	Stegastes_partitus
ENSAMXG00000006756	prpf4	99	73.465	ENSSSCG00000024648	PRPF4	97	62.380	Sus_scrofa
ENSAMXG00000006756	prpf4	97	72.414	ENSTGUG00000002623	PRPF4	100	61.584	Taeniopygia_guttata
ENSAMXG00000006756	prpf4	99	74.308	ENSTRUG00000008853	prpf4	99	62.644	Takifugu_rubripes
ENSAMXG00000006756	prpf4	99	72.673	ENSTNIG00000013250	prpf4	91	63.966	Tetraodon_nigroviridis
ENSAMXG00000006756	prpf4	99	66.733	ENSTBEG00000000821	PRPF4	97	57.471	Tupaia_belangeri
ENSAMXG00000006756	prpf4	88	82.558	ENSTTRG00000003246	PRPF4	84	82.558	Tursiops_truncatus
ENSAMXG00000006756	prpf4	67	75.786	ENSUAMG00000018288	PRPF4	88	77.199	Ursus_americanus
ENSAMXG00000006756	prpf4	99	72.871	ENSUMAG00000019375	PRPF4	97	61.804	Ursus_maritimus
ENSAMXG00000006756	prpf4	99	73.465	ENSVPAG00000005281	PRPF4	97	62.380	Vicugna_pacos
ENSAMXG00000006756	prpf4	99	73.069	ENSVVUG00000002476	PRPF4	99	61.996	Vulpes_vulpes
ENSAMXG00000006756	prpf4	78	61.456	ENSXCOG00000006101	prpf4	93	61.456	Xiphophorus_couchianus
ENSAMXG00000006756	prpf4	100	68.399	ENSXMAG00000002750	prpf4	99	68.607	Xiphophorus_maculatus