EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000006778 (Gene tree)
Gene ID: 103040345
Gene Symbol: rc3h2
Alias: si:ch211-243g18.1
Full Name: roquin-2-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 40281 bases
Position: chr20:6122912-6163192
Accession: 103040345
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000038764	zf-CCCH	PF00642.24	1e-06	1	1
ENSAMXP00000029675	zf-CCCH	PF00642.24	1e-06	1	1
ENSAMXP00000006962	zf-CCCH	PF00642.24	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000034652	-	3105	-	ENSAMXP00000029675	1034 (aa)	-	-
ENSAMXT00000054725	-	3091	-	ENSAMXP00000038764	1012 (aa)	-	-
ENSAMXT00000006962	-	3582	XM_022680954	ENSAMXP00000006962	1061 (aa)	XP_022536675	W5KHA0

Gene Model

Click here to download ENSAMXG00000006778's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000006778's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000006778	rc3h2	88	57.548	ENSG00000056586	RC3H2	94	85.333	Homo_sapiens
ENSAMXG00000006778	rc3h2	100	68.154	ENSAPOG00000002117	rc3h2	94	68.077	Acanthochromis_polyacanthus
ENSAMXG00000006778	rc3h2	88	58.308	ENSAMEG00000006498	RC3H2	81	58.299	Ailuropoda_melanoleuca
ENSAMXG00000006778	rc3h2	100	67.952	ENSAPEG00000007757	rc3h2	94	67.952	Amphiprion_percula
ENSAMXG00000006778	rc3h2	100	67.422	ENSATEG00000019414	rc3h2	95	67.310	Anabas_testudineus
ENSAMXG00000006778	rc3h2	83	63.396	ENSAPLG00000013920	RC3H2	81	59.443	Anas_platyrhynchos
ENSAMXG00000006778	rc3h2	88	57.432	ENSANAG00000030862	RC3H2	94	85.333	Aotus_nancymaae
ENSAMXG00000006778	rc3h2	100	68.100	ENSACLG00000023136	rc3h2	94	67.742	Astatotilapia_calliptera
ENSAMXG00000006778	rc3h2	93	55.492	ENSBTAG00000023867	RC3H2	80	58.932	Bos_taurus
ENSAMXG00000006778	rc3h2	88	57.432	ENSCJAG00000020050	RC3H2	94	85.333	Callithrix_jacchus
ENSAMXG00000006778	rc3h2	93	54.652	ENSCAFG00020015288	RC3H2	94	85.333	Canis_lupus_dingo
ENSAMXG00000006778	rc3h2	93	54.595	ENSCHIG00000019319	RC3H2	83	57.798	Capra_hircus
ENSAMXG00000006778	rc3h2	86	48.949	ENSCAPG00000017086	RC3H2	68	75.188	Cavia_aperea
ENSAMXG00000006778	rc3h2	93	54.891	ENSCPOG00000008511	RC3H2	81	58.359	Cavia_porcellus
ENSAMXG00000006778	rc3h2	93	54.034	ENSCCAG00000001404	RC3H2	94	85.333	Cebus_capucinus
ENSAMXG00000006778	rc3h2	88	57.548	ENSCATG00000036655	RC3H2	94	85.333	Cercocebus_atys
ENSAMXG00000006778	rc3h2	93	54.389	ENSCLAG00000013261	RC3H2	81	58.008	Chinchilla_lanigera
ENSAMXG00000006778	rc3h2	75	54.651	ENSCSAG00000013416	RC3H2	78	54.728	Chlorocebus_sabaeus
ENSAMXG00000006778	rc3h2	93	55.258	ENSCPBG00000009811	RC3H2	81	59.583	Chrysemys_picta_bellii
ENSAMXG00000006778	rc3h2	88	57.548	ENSCANG00000043140	RC3H2	94	85.333	Colobus_angolensis_palliatus
ENSAMXG00000006778	rc3h2	93	54.554	ENSCGRG00001010006	Rc3h2	81	57.932	Cricetulus_griseus_chok1gshd
ENSAMXG00000006778	rc3h2	92	54.116	ENSCGRG00000009255	Rc3h2	88	54.256	Cricetulus_griseus_crigri
ENSAMXG00000006778	rc3h2	100	65.912	ENSCSEG00000017460	rc3h2	94	65.024	Cynoglossus_semilaevis
ENSAMXG00000006778	rc3h2	99	66.748	ENSCVAG00000012202	rc3h2	100	60.088	Cyprinodon_variegatus
ENSAMXG00000006778	rc3h2	100	67.422	ENSDARG00000063050	rc3h2	100	67.906	Danio_rerio
ENSAMXG00000006778	rc3h2	93	54.932	ENSDNOG00000014557	RC3H2	81	58.299	Dasypus_novemcinctus
ENSAMXG00000006778	rc3h2	93	54.669	ENSDORG00000006398	Rc3h2	81	58.256	Dipodomys_ordii
ENSAMXG00000006778	rc3h2	93	54.706	ENSEASG00005020897	RC3H2	94	81.333	Equus_asinus_asinus
ENSAMXG00000006778	rc3h2	93	54.611	ENSECAG00000022176	RC3H2	81	57.830	Equus_caballus
ENSAMXG00000006778	rc3h2	100	64.821	ENSELUG00000006105	rc3h2	100	64.732	Esox_lucius
ENSAMXG00000006778	rc3h2	93	55.215	ENSFCAG00000007375	RC3H2	81	58.504	Felis_catus
ENSAMXG00000006778	rc3h2	94	62.843	ENSFALG00000002011	RC3H2	81	59.385	Ficedula_albicollis
ENSAMXG00000006778	rc3h2	93	54.570	ENSFDAG00000012477	RC3H2	81	58.111	Fukomys_damarensis
ENSAMXG00000006778	rc3h2	99	67.485	ENSFHEG00000012272	rc3h2	94	67.365	Fundulus_heteroclitus
ENSAMXG00000006778	rc3h2	68	58.530	ENSGMOG00000016709	-	99	58.785	Gadus_morhua
ENSAMXG00000006778	rc3h2	83	62.958	ENSGALG00000001253	RC3H2	81	59.443	Gallus_gallus
ENSAMXG00000006778	rc3h2	96	68.864	ENSGAFG00000007679	rc3h2	100	62.249	Gambusia_affinis
ENSAMXG00000006778	rc3h2	74	63.810	ENSGACG00000017369	rc3h2	100	90.045	Gasterosteus_aculeatus
ENSAMXG00000006778	rc3h2	93	54.801	ENSGAGG00000018295	RC3H2	88	58.776	Gopherus_agassizii
ENSAMXG00000006778	rc3h2	88	57.548	ENSGGOG00000017062	RC3H2	94	85.333	Gorilla_gorilla
ENSAMXG00000006778	rc3h2	100	69.745	ENSHBUG00000003976	rc3h2	94	69.380	Haplochromis_burtoni
ENSAMXG00000006778	rc3h2	93	54.521	ENSHGLG00100018015	RC3H2	81	58.051	Heterocephalus_glaber_male
ENSAMXG00000006778	rc3h2	100	65.735	ENSHCOG00000003006	rc3h2	100	58.925	Hippocampus_comes
ENSAMXG00000006778	rc3h2	100	75.570	ENSIPUG00000021433	rc3h2	100	76.068	Ictalurus_punctatus
ENSAMXG00000006778	rc3h2	93	54.488	ENSSTOG00000010655	RC3H2	81	58.051	Ictidomys_tridecemlineatus
ENSAMXG00000006778	rc3h2	93	54.364	ENSJJAG00000022376	Rc3h2	81	57.906	Jaculus_jaculus
ENSAMXG00000006778	rc3h2	100	61.687	ENSKMAG00000010936	rc3h2	100	61.791	Kryptolebias_marmoratus
ENSAMXG00000006778	rc3h2	99	61.812	ENSLOCG00000002894	rc3h2	94	61.567	Lepisosteus_oculatus
ENSAMXG00000006778	rc3h2	93	54.611	ENSLAFG00000003521	RC3H2	81	57.949	Loxodonta_africana
ENSAMXG00000006778	rc3h2	82	82.721	ENSMFAG00000035621	RC3H2	94	85.333	Macaca_fascicularis
ENSAMXG00000006778	rc3h2	93	54.042	ENSMMUG00000021134	RC3H2	94	85.333	Macaca_mulatta
ENSAMXG00000006778	rc3h2	88	57.548	ENSMNEG00000031599	RC3H2	94	83.111	Macaca_nemestrina
ENSAMXG00000006778	rc3h2	93	54.042	ENSMLEG00000033809	RC3H2	94	85.333	Mandrillus_leucophaeus
ENSAMXG00000006778	rc3h2	50	90.476	ENSMAMG00000009119	rc3h2	94	90.476	Mastacembelus_armatus
ENSAMXG00000006778	rc3h2	100	69.212	ENSMZEG00005017019	rc3h2	94	67.990	Maylandia_zebra
ENSAMXG00000006778	rc3h2	83	63.112	ENSMGAG00000007984	RC3H2	81	59.217	Meleagris_gallopavo
ENSAMXG00000006778	rc3h2	74	58.880	ENSMAUG00000003117	Rc3h2	65	61.888	Mesocricetus_auratus
ENSAMXG00000006778	rc3h2	88	57.591	ENSMICG00000003227	RC3H2	94	85.111	Microcebus_murinus
ENSAMXG00000006778	rc3h2	93	54.216	ENSMOCG00000009592	Rc3h2	81	57.700	Microtus_ochrogaster
ENSAMXG00000006778	rc3h2	92	64.724	ENSMMOG00000021305	rc3h2	86	90.423	Mola_mola
ENSAMXG00000006778	rc3h2	93	54.611	ENSMODG00000019725	RC3H2	68	57.830	Monodelphis_domestica
ENSAMXG00000006778	rc3h2	93	55.628	MGP_CAROLIEiJ_G0023516	Rc3h2	94	85.333	Mus_caroli
ENSAMXG00000006778	rc3h2	93	54.891	ENSMUSG00000075376	Rc3h2	94	85.333	Mus_musculus
ENSAMXG00000006778	rc3h2	93	55.032	MGP_PahariEiJ_G0024969	Rc3h2	94	85.333	Mus_pahari
ENSAMXG00000006778	rc3h2	93	55.122	MGP_SPRETEiJ_G0024436	Rc3h2	94	85.333	Mus_spretus
ENSAMXG00000006778	rc3h2	93	54.521	ENSMPUG00000014141	RC3H2	81	57.949	Mustela_putorius_furo
ENSAMXG00000006778	rc3h2	86	57.906	ENSMLUG00000013992	RC3H2	81	57.641	Myotis_lucifugus
ENSAMXG00000006778	rc3h2	100	69.212	ENSNBRG00000009276	rc3h2	94	68.848	Neolamprologus_brichardi
ENSAMXG00000006778	rc3h2	88	57.316	ENSNLEG00000017204	RC3H2	94	85.333	Nomascus_leucogenys
ENSAMXG00000006778	rc3h2	69	57.534	ENSOPRG00000000135	RC3H2	73	55.155	Ochotona_princeps
ENSAMXG00000006778	rc3h2	100	68.133	ENSONIG00000003945	rc3h2	94	67.780	Oreochromis_niloticus
ENSAMXG00000006778	rc3h2	92	55.333	ENSOANG00000008194	RC3H2	89	58.709	Ornithorhynchus_anatinus
ENSAMXG00000006778	rc3h2	93	54.578	ENSOCUG00000008804	RC3H2	81	57.803	Oryctolagus_cuniculus
ENSAMXG00000006778	rc3h2	100	66.667	ENSORLG00000010018	rc3h2	95	65.749	Oryzias_latipes
ENSAMXG00000006778	rc3h2	100	66.787	ENSORLG00020013257	rc3h2	95	65.554	Oryzias_latipes_hni
ENSAMXG00000006778	rc3h2	100	66.507	ENSORLG00015001525	rc3h2	95	65.435	Oryzias_latipes_hsok
ENSAMXG00000006778	rc3h2	100	66.707	ENSOMEG00000023540	rc3h2	95	66.626	Oryzias_melastigma
ENSAMXG00000006778	rc3h2	88	57.563	ENSOGAG00000010678	RC3H2	81	57.538	Otolemur_garnettii
ENSAMXG00000006778	rc3h2	93	54.496	ENSOARG00000013965	RC3H2	81	57.798	Ovis_aries
ENSAMXG00000006778	rc3h2	88	57.447	ENSPPAG00000036013	RC3H2	94	85.111	Pan_paniscus
ENSAMXG00000006778	rc3h2	88	57.980	ENSPPRG00000008698	RC3H2	90	58.299	Panthera_pardus
ENSAMXG00000006778	rc3h2	88	57.980	ENSPTIG00000014257	RC3H2	90	58.299	Panthera_tigris_altaica
ENSAMXG00000006778	rc3h2	88	57.447	ENSPTRG00000021339	RC3H2	94	85.111	Pan_troglodytes
ENSAMXG00000006778	rc3h2	88	55.927	ENSPANG00000025840	RC3H2	94	81.778	Papio_anubis
ENSAMXG00000006778	rc3h2	99	63.975	ENSPKIG00000021910	rc3h2	96	63.521	Paramormyrops_kingsleyae
ENSAMXG00000006778	rc3h2	86	59.754	ENSPSIG00000005393	RC3H2	81	59.631	Pelodiscus_sinensis
ENSAMXG00000006778	rc3h2	88	88.688	ENSPMGG00000023963	rc3h2	95	88.688	Periophthalmus_magnuspinnatus
ENSAMXG00000006778	rc3h2	93	54.430	ENSPEMG00000023441	Rc3h2	81	58.008	Peromyscus_maniculatus_bairdii
ENSAMXG00000006778	rc3h2	88	82.721	ENSPCIG00000025559	RC3H2	79	82.721	Phascolarctos_cinereus
ENSAMXG00000006778	rc3h2	98	65.789	ENSPFOG00000019699	rc3h2	97	65.353	Poecilia_formosa
ENSAMXG00000006778	rc3h2	92	64.264	ENSPLAG00000005799	rc3h2	89	89.254	Poecilia_latipinna
ENSAMXG00000006778	rc3h2	98	65.789	ENSPMEG00000014187	rc3h2	97	65.353	Poecilia_mexicana
ENSAMXG00000006778	rc3h2	99	69.506	ENSPREG00000008979	rc3h2	94	68.734	Poecilia_reticulata
ENSAMXG00000006778	rc3h2	78	73.518	ENSPCAG00000010154	RC3H2	67	73.518	Procavia_capensis
ENSAMXG00000006778	rc3h2	100	68.138	ENSPNYG00000012063	rc3h2	94	67.780	Pundamilia_nyererei
ENSAMXG00000006778	rc3h2	100	83.645	ENSPNAG00000017502	rc3h2	100	83.458	Pygocentrus_nattereri
ENSAMXG00000006778	rc3h2	93	55.032	ENSRNOG00000009196	Rc3h2	84	58.522	Rattus_norvegicus
ENSAMXG00000006778	rc3h2	93	53.944	ENSRBIG00000032579	RC3H2	94	85.333	Rhinopithecus_bieti
ENSAMXG00000006778	rc3h2	93	54.133	ENSRROG00000043784	RC3H2	94	85.333	Rhinopithecus_roxellana
ENSAMXG00000006778	rc3h2	88	57.949	ENSSBOG00000029100	RC3H2	95	84.430	Saimiri_boliviensis_boliviensis
ENSAMXG00000006778	rc3h2	93	54.603	ENSSHAG00000007498	RC3H2	81	58.342	Sarcophilus_harrisii
ENSAMXG00000006778	rc3h2	100	67.227	ENSSMAG00000020048	rc3h2	94	66.747	Scophthalmus_maximus
ENSAMXG00000006778	rc3h2	100	68.220	ENSSDUG00000016022	rc3h2	100	61.407	Seriola_dumerili
ENSAMXG00000006778	rc3h2	100	68.220	ENSSLDG00000016070	rc3h2	100	61.354	Seriola_lalandi_dorsalis
ENSAMXG00000006778	rc3h2	93	54.291	ENSSARG00000012329	RC3H2	81	57.787	Sorex_araneus
ENSAMXG00000006778	rc3h2	91	61.794	ENSSPUG00000001457	RC3H2	81	58.256	Sphenodon_punctatus
ENSAMXG00000006778	rc3h2	100	67.622	ENSSPAG00000005233	rc3h2	100	61.757	Stegastes_partitus
ENSAMXG00000006778	rc3h2	93	54.472	ENSSSCG00000005575	RC3H2	92	85.111	Sus_scrofa
ENSAMXG00000006778	rc3h2	94	63.325	ENSTGUG00000006889	-	81	59.340	Taeniopygia_guttata
ENSAMXG00000006778	rc3h2	87	65.031	ENSTNIG00000004942	rc3h2	99	61.538	Tetraodon_nigroviridis
ENSAMXG00000006778	rc3h2	75	61.146	ENSTBEG00000009622	RC3H2	78	58.542	Tupaia_belangeri
ENSAMXG00000006778	rc3h2	81	64.436	ENSTTRG00000016954	RC3H2	74	63.926	Tursiops_truncatus
ENSAMXG00000006778	rc3h2	93	55.534	ENSUAMG00000015355	RC3H2	81	58.299	Ursus_americanus
ENSAMXG00000006778	rc3h2	93	54.833	ENSUMAG00000003161	RC3H2	94	85.333	Ursus_maritimus
ENSAMXG00000006778	rc3h2	88	58.241	ENSVPAG00000005994	RC3H2	81	57.932	Vicugna_pacos
ENSAMXG00000006778	rc3h2	93	54.652	ENSVVUG00000009519	RC3H2	84	58.197	Vulpes_vulpes
ENSAMXG00000006778	rc3h2	92	64.158	ENSXCOG00000005002	rc3h2	97	88.914	Xiphophorus_couchianus
ENSAMXG00000006778	rc3h2	99	65.336	ENSXMAG00000001724	rc3h2	99	64.781	Xiphophorus_maculatus