EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000006978 (Gene tree)
Gene ID: 103043221
Gene Symbol: ythdc1
Alias: zgc:101592
Full Name: YTH domain containing 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 21506 bases
Position: chrAPWO02000113.1:4405951-4427456
Accession: 103043221
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000007166	YTH	PF04146.15	1.6e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000007166	-	2055	XM_007229680	ENSAMXP00000007166	684 (aa)	XP_007229742	W5KHV4

Gene Model

Click here to download ENSAMXG00000006978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000006978's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000006978	ythdc1	92	65.991	ENSG00000083896	YTHDC1	85	85.000	Homo_sapiens
ENSAMXG00000006978	ythdc1	66	64.978	ENSAPOG00000013997	ythdc1	93	59.070	Acanthochromis_polyacanthus
ENSAMXG00000006978	ythdc1	58	79.814	ENSAMEG00000005688	YTHDC1	93	64.080	Ailuropoda_melanoleuca
ENSAMXG00000006978	ythdc1	92	60.184	ENSAOCG00000000239	ythdc1	94	63.720	Amphiprion_ocellaris
ENSAMXG00000006978	ythdc1	83	62.995	ENSAPEG00000000618	ythdc1	88	65.000	Amphiprion_percula
ENSAMXG00000006978	ythdc1	83	63.715	ENSATEG00000023007	ythdc1	91	65.104	Anabas_testudineus
ENSAMXG00000006978	ythdc1	91	67.119	ENSAPLG00000009921	YTHDC1	92	65.710	Anas_platyrhynchos
ENSAMXG00000006978	ythdc1	92	65.430	ENSACAG00000009697	YTHDC1	93	64.042	Anolis_carolinensis
ENSAMXG00000006978	ythdc1	92	65.751	ENSANAG00000001522	YTHDC1	93	64.265	Aotus_nancymaae
ENSAMXG00000006978	ythdc1	92	60.090	ENSACLG00000019371	ythdc1	94	63.609	Astatotilapia_calliptera
ENSAMXG00000006978	ythdc1	92	65.173	ENSBTAG00000015572	YTHDC1	93	63.689	Bos_taurus
ENSAMXG00000006978	ythdc1	92	65.896	ENSCJAG00000009934	YTHDC1	93	64.409	Callithrix_jacchus
ENSAMXG00000006978	ythdc1	58	79.814	ENSCAFG00000002821	YTHDC1	93	64.080	Canis_familiaris
ENSAMXG00000006978	ythdc1	58	79.814	ENSCAFG00020027112	YTHDC1	93	64.080	Canis_lupus_dingo
ENSAMXG00000006978	ythdc1	91	61.271	ENSCHIG00000004810	YTHDC1	95	62.004	Capra_hircus
ENSAMXG00000006978	ythdc1	92	65.847	ENSTSYG00000011668	YTHDC1	93	64.358	Carlito_syrichta
ENSAMXG00000006978	ythdc1	90	48.536	ENSCAPG00000008722	YTHDC1	89	48.318	Cavia_aperea
ENSAMXG00000006978	ythdc1	92	59.479	ENSCPOG00000010929	YTHDC1	92	56.324	Cavia_porcellus
ENSAMXG00000006978	ythdc1	92	66.087	ENSCCAG00000035754	YTHDC1	93	64.595	Cebus_capucinus
ENSAMXG00000006978	ythdc1	92	65.875	ENSCATG00000036320	YTHDC1	97	62.030	Cercocebus_atys
ENSAMXG00000006978	ythdc1	91	65.559	ENSCLAG00000005482	YTHDC1	92	65.113	Chinchilla_lanigera
ENSAMXG00000006978	ythdc1	92	66.040	ENSCSAG00000005252	YTHDC1	93	64.553	Chlorocebus_sabaeus
ENSAMXG00000006978	ythdc1	91	70.487	ENSCPBG00000021965	YTHDC1	94	64.241	Chrysemys_picta_bellii
ENSAMXG00000006978	ythdc1	92	65.896	ENSCANG00000004769	YTHDC1	96	61.842	Colobus_angolensis_palliatus
ENSAMXG00000006978	ythdc1	92	65.379	ENSCGRG00001000816	Ythdc1	93	64.793	Cricetulus_griseus_chok1gshd
ENSAMXG00000006978	ythdc1	91	65.543	ENSCGRG00000009807	Ythdc1	92	64.918	Cricetulus_griseus_crigri
ENSAMXG00000006978	ythdc1	92	60.507	ENSCSEG00000020404	ythdc1	94	65.191	Cynoglossus_semilaevis
ENSAMXG00000006978	ythdc1	58	68.310	ENSCVAG00000022349	ythdc1	94	61.468	Cyprinodon_variegatus
ENSAMXG00000006978	ythdc1	92	86.076	ENSDARG00000051953	ythdc1	92	85.127	Danio_rerio
ENSAMXG00000006978	ythdc1	92	66.423	ENSDNOG00000004949	YTHDC1	93	64.663	Dasypus_novemcinctus
ENSAMXG00000006978	ythdc1	91	65.689	ENSDORG00000013045	Ythdc1	92	65.067	Dipodomys_ordii
ENSAMXG00000006978	ythdc1	74	81.250	ENSETEG00000001878	YTHDC1	65	91.667	Echinops_telfairi
ENSAMXG00000006978	ythdc1	85	65.109	ENSEASG00005018383	YTHDC1	93	64.224	Equus_asinus_asinus
ENSAMXG00000006978	ythdc1	80	85.255	ENSECAG00000018303	YTHDC1	80	86.835	Equus_caballus
ENSAMXG00000006978	ythdc1	58	78.886	ENSEEUG00000015466	YTHDC1	93	63.833	Erinaceus_europaeus
ENSAMXG00000006978	ythdc1	92	78.517	ENSELUG00000014029	ythdc1	96	78.159	Esox_lucius
ENSAMXG00000006978	ythdc1	92	65.512	ENSFCAG00000026791	YTHDC1	93	64.029	Felis_catus
ENSAMXG00000006978	ythdc1	72	75.561	ENSFALG00000006581	YTHDC1	81	87.395	Ficedula_albicollis
ENSAMXG00000006978	ythdc1	91	65.685	ENSFDAG00000018560	YTHDC1	92	65.060	Fukomys_damarensis
ENSAMXG00000006978	ythdc1	66	57.525	ENSGMOG00000018815	ythdc1	91	50.985	Gadus_morhua
ENSAMXG00000006978	ythdc1	91	67.752	ENSGALG00000035906	YTHDC1	85	66.667	Gallus_gallus
ENSAMXG00000006978	ythdc1	100	56.950	ENSGACG00000015486	ythdc1	94	56.815	Gasterosteus_aculeatus
ENSAMXG00000006978	ythdc1	92	69.891	ENSGAGG00000007108	YTHDC1	92	68.643	Gopherus_agassizii
ENSAMXG00000006978	ythdc1	92	65.875	ENSGGOG00000021958	YTHDC1	97	61.914	Gorilla_gorilla
ENSAMXG00000006978	ythdc1	92	60.241	ENSHBUG00000019288	ythdc1	93	63.761	Haplochromis_burtoni
ENSAMXG00000006978	ythdc1	92	65.770	ENSHGLG00000006319	-	92	65.179	Heterocephalus_glaber_female
ENSAMXG00000006978	ythdc1	94	54.018	ENSHGLG00000003239	-	86	52.977	Heterocephalus_glaber_female
ENSAMXG00000006978	ythdc1	94	52.593	ENSHGLG00100008060	-	86	52.049	Heterocephalus_glaber_male
ENSAMXG00000006978	ythdc1	92	64.978	ENSHGLG00100001556	-	93	63.492	Heterocephalus_glaber_male
ENSAMXG00000006978	ythdc1	59	66.571	ENSHCOG00000001520	ythdc1	88	68.391	Hippocampus_comes
ENSAMXG00000006978	ythdc1	92	86.457	ENSIPUG00000018136	ythdc1	92	87.087	Ictalurus_punctatus
ENSAMXG00000006978	ythdc1	58	78.385	ENSSTOG00000013652	YTHDC1	93	63.016	Ictidomys_tridecemlineatus
ENSAMXG00000006978	ythdc1	58	79.177	ENSJJAG00000010268	Ythdc1	92	64.394	Jaculus_jaculus
ENSAMXG00000006978	ythdc1	62	66.742	ENSKMAG00000006483	ythdc1	86	72.837	Kryptolebias_marmoratus
ENSAMXG00000006978	ythdc1	64	79.545	ENSLBEG00000020831	ythdc1	72	79.545	Labrus_bergylta
ENSAMXG00000006978	ythdc1	86	65.319	ENSLACG00000004893	YTHDC1	92	64.852	Latimeria_chalumnae
ENSAMXG00000006978	ythdc1	92	74.524	ENSLOCG00000003045	ythdc1	92	71.280	Lepisosteus_oculatus
ENSAMXG00000006978	ythdc1	92	65.418	ENSLAFG00000021592	YTHDC1	100	60.434	Loxodonta_africana
ENSAMXG00000006978	ythdc1	92	65.875	ENSMFAG00000031927	YTHDC1	96	61.842	Macaca_fascicularis
ENSAMXG00000006978	ythdc1	92	65.896	ENSMMUG00000002265	YTHDC1	93	64.409	Macaca_mulatta
ENSAMXG00000006978	ythdc1	92	65.896	ENSMNEG00000033751	YTHDC1	96	61.842	Macaca_nemestrina
ENSAMXG00000006978	ythdc1	92	65.896	ENSMLEG00000042147	YTHDC1	96	61.842	Mandrillus_leucophaeus
ENSAMXG00000006978	ythdc1	57	70.833	ENSMAMG00000013122	ythdc1	92	60.656	Mastacembelus_armatus
ENSAMXG00000006978	ythdc1	92	60.090	ENSMZEG00005023173	ythdc1	93	63.609	Maylandia_zebra
ENSAMXG00000006978	ythdc1	92	66.716	ENSMGAG00000010391	YTHDC1	92	65.625	Meleagris_gallopavo
ENSAMXG00000006978	ythdc1	92	65.379	ENSMAUG00000001286	Ythdc1	93	64.793	Mesocricetus_auratus
ENSAMXG00000006978	ythdc1	92	65.710	ENSMICG00000034640	YTHDC1	93	64.235	Microcebus_murinus
ENSAMXG00000006978	ythdc1	92	65.022	ENSMOCG00000020201	Ythdc1	92	64.435	Microtus_ochrogaster
ENSAMXG00000006978	ythdc1	96	42.207	ENSMODG00000010076	-	59	51.675	Monodelphis_domestica
ENSAMXG00000006978	ythdc1	65	50.104	ENSMODG00000009173	-	88	51.064	Monodelphis_domestica
ENSAMXG00000006978	ythdc1	96	48.426	ENSMODG00000014337	-	93	58.294	Monodelphis_domestica
ENSAMXG00000006978	ythdc1	51	57.020	ENSMODG00000004117	-	92	57.276	Monodelphis_domestica
ENSAMXG00000006978	ythdc1	92	68.018	ENSMODG00000020754	-	92	66.418	Monodelphis_domestica
ENSAMXG00000006978	ythdc1	84	63.605	ENSMALG00000013412	ythdc1	93	63.918	Monopterus_albus
ENSAMXG00000006978	ythdc1	92	64.978	MGP_CAROLIEiJ_G0027347	Ythdc1	93	63.348	Mus_caroli
ENSAMXG00000006978	ythdc1	92	64.740	ENSMUSG00000035851	Ythdc1	93	63.112	Mus_musculus
ENSAMXG00000006978	ythdc1	92	64.884	MGP_PahariEiJ_G0017126	Ythdc1	93	63.401	Mus_pahari
ENSAMXG00000006978	ythdc1	92	64.884	MGP_SPRETEiJ_G0028339	Ythdc1	93	63.256	Mus_spretus
ENSAMXG00000006978	ythdc1	67	85.255	ENSMPUG00000001743	YTHDC1	61	86.835	Mustela_putorius_furo
ENSAMXG00000006978	ythdc1	91	66.224	ENSMLUG00000016300	YTHDC1	92	64.706	Myotis_lucifugus
ENSAMXG00000006978	ythdc1	57	56.308	ENSNGAG00000024000	Ythdc1	93	55.324	Nannospalax_galili
ENSAMXG00000006978	ythdc1	58	68.059	ENSNBRG00000007663	ythdc1	71	72.482	Neolamprologus_brichardi
ENSAMXG00000006978	ythdc1	91	64.638	ENSNLEG00000009202	YTHDC1	96	60.829	Nomascus_leucogenys
ENSAMXG00000006978	ythdc1	69	71.197	ENSMEUG00000007128	YTHDC1	64	71.197	Notamacropus_eugenii
ENSAMXG00000006978	ythdc1	70	85.256	ENSOPRG00000008986	YTHDC1	66	85.113	Ochotona_princeps
ENSAMXG00000006978	ythdc1	92	65.648	ENSODEG00000001715	YTHDC1	93	64.151	Octodon_degus
ENSAMXG00000006978	ythdc1	92	79.545	ENSONIG00000012651	ythdc1	91	72.000	Oreochromis_niloticus
ENSAMXG00000006978	ythdc1	86	59.237	ENSOANG00000014398	YTHDC1	50	84.658	Ornithorhynchus_anatinus
ENSAMXG00000006978	ythdc1	92	59.938	ENSORLG00000030544	ythdc1	94	63.020	Oryzias_latipes
ENSAMXG00000006978	ythdc1	92	59.385	ENSORLG00020019316	ythdc1	94	63.077	Oryzias_latipes_hni
ENSAMXG00000006978	ythdc1	92	59.847	ENSOMEG00000000551	ythdc1	94	60.060	Oryzias_melastigma
ENSAMXG00000006978	ythdc1	92	65.797	ENSOGAG00000003362	YTHDC1	93	64.306	Otolemur_garnettii
ENSAMXG00000006978	ythdc1	92	65.173	ENSOARG00000008633	YTHDC1	93	63.689	Ovis_aries
ENSAMXG00000006978	ythdc1	92	65.973	ENSPPAG00000041315	YTHDC1	97	61.278	Pan_paniscus
ENSAMXG00000006978	ythdc1	92	65.630	ENSPPRG00000011979	YTHDC1	92	65.044	Panthera_pardus
ENSAMXG00000006978	ythdc1	91	65.414	ENSPTIG00000015527	YTHDC1	92	64.820	Panthera_tigris_altaica
ENSAMXG00000006978	ythdc1	92	65.973	ENSPTRG00000016105	YTHDC1	97	61.278	Pan_troglodytes
ENSAMXG00000006978	ythdc1	92	65.875	ENSPANG00000021590	YTHDC1	96	61.869	Papio_anubis
ENSAMXG00000006978	ythdc1	92	77.811	ENSPKIG00000018497	ythdc1	93	77.361	Paramormyrops_kingsleyae
ENSAMXG00000006978	ythdc1	91	66.867	ENSPSIG00000002782	YTHDC1	92	64.404	Pelodiscus_sinensis
ENSAMXG00000006978	ythdc1	56	63.125	ENSPMGG00000000970	-	76	65.312	Periophthalmus_magnuspinnatus
ENSAMXG00000006978	ythdc1	91	65.396	ENSPEMG00000013850	Ythdc1	92	64.768	Peromyscus_maniculatus_bairdii
ENSAMXG00000006978	ythdc1	92	68.105	ENSPCIG00000006870	YTHDC1	92	67.643	Phascolarctos_cinereus
ENSAMXG00000006978	ythdc1	57	68.171	ENSPFOG00000013404	ythdc1	94	62.558	Poecilia_formosa
ENSAMXG00000006978	ythdc1	57	68.171	ENSPLAG00000011079	ythdc1	85	74.321	Poecilia_latipinna
ENSAMXG00000006978	ythdc1	57	68.171	ENSPMEG00000009238	ythdc1	94	62.712	Poecilia_mexicana
ENSAMXG00000006978	ythdc1	57	67.848	ENSPREG00000016973	ythdc1	93	58.307	Poecilia_reticulata
ENSAMXG00000006978	ythdc1	75	70.213	ENSPPYG00000014726	YTHDC1	87	68.375	Pongo_abelii
ENSAMXG00000006978	ythdc1	76	73.043	ENSPCAG00000009607	YTHDC1	77	70.386	Procavia_capensis
ENSAMXG00000006978	ythdc1	92	63.581	ENSPCOG00000019105	YTHDC1	92	62.840	Propithecus_coquereli
ENSAMXG00000006978	ythdc1	58	76.798	ENSPVAG00000015551	YTHDC1	93	62.572	Pteropus_vampyrus
ENSAMXG00000006978	ythdc1	92	60.090	ENSPNYG00000011687	ythdc1	94	63.609	Pundamilia_nyererei
ENSAMXG00000006978	ythdc1	92	94.953	ENSPNAG00000028365	ythdc1	100	96.070	Pygocentrus_nattereri
ENSAMXG00000006978	ythdc1	58	77.449	ENSRNOG00000001996	Ythdc1	93	62.216	Rattus_norvegicus
ENSAMXG00000006978	ythdc1	91	64.731	ENSRBIG00000028279	YTHDC1	96	61.321	Rhinopithecus_bieti
ENSAMXG00000006978	ythdc1	92	65.896	ENSRROG00000035028	YTHDC1	96	61.842	Rhinopithecus_roxellana
ENSAMXG00000006978	ythdc1	92	65.875	ENSSBOG00000022353	YTHDC1	96	61.842	Saimiri_boliviensis_boliviensis
ENSAMXG00000006978	ythdc1	92	67.267	ENSSHAG00000002538	YTHDC1	91	67.402	Sarcophilus_harrisii
ENSAMXG00000006978	ythdc1	92	80.564	ENSSFOG00015003298	ythdc1	92	79.154	Scleropages_formosus
ENSAMXG00000006978	ythdc1	92	59.165	ENSSMAG00000009086	ythdc1	94	62.901	Scophthalmus_maximus
ENSAMXG00000006978	ythdc1	57	71.007	ENSSDUG00000022008	ythdc1	94	64.795	Seriola_dumerili
ENSAMXG00000006978	ythdc1	57	71.253	ENSSLDG00000007926	ythdc1	94	64.795	Seriola_lalandi_dorsalis
ENSAMXG00000006978	ythdc1	68	73.025	ENSSARG00000010960	YTHDC1	72	78.066	Sorex_araneus
ENSAMXG00000006978	ythdc1	92	68.012	ENSSPUG00000009357	YTHDC1	97	64.188	Sphenodon_punctatus
ENSAMXG00000006978	ythdc1	92	59.939	ENSSPAG00000011449	ythdc1	94	63.086	Stegastes_partitus
ENSAMXG00000006978	ythdc1	58	79.814	ENSSSCG00000035505	YTHDC1	93	64.151	Sus_scrofa
ENSAMXG00000006978	ythdc1	92	67.857	ENSTGUG00000004452	-	92	65.574	Taeniopygia_guttata
ENSAMXG00000006978	ythdc1	58	62.648	ENSTRUG00000010142	ythdc1	63	67.568	Takifugu_rubripes
ENSAMXG00000006978	ythdc1	92	63.542	ENSTBEG00000011546	YTHDC1	92	62.202	Tupaia_belangeri
ENSAMXG00000006978	ythdc1	58	78.654	ENSTTRG00000005083	YTHDC1	93	63.218	Tursiops_truncatus
ENSAMXG00000006978	ythdc1	85	65.055	ENSUAMG00000010388	YTHDC1	92	64.377	Ursus_americanus
ENSAMXG00000006978	ythdc1	91	61.069	ENSUMAG00000013668	YTHDC1	90	59.332	Ursus_maritimus
ENSAMXG00000006978	ythdc1	92	65.723	ENSVPAG00000009040	YTHDC1	92	65.282	Vicugna_pacos
ENSAMXG00000006978	ythdc1	91	64.935	ENSVVUG00000005387	YTHDC1	94	61.821	Vulpes_vulpes
ENSAMXG00000006978	ythdc1	91	67.712	ENSXETG00000017960	ythdc1	91	67.555	Xenopus_tropicalis
ENSAMXG00000006978	ythdc1	92	58.157	ENSXMAG00000005196	ythdc1	94	62.693	Xiphophorus_maculatus