EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000007359 (Gene tree)
Gene ID: 103044901
Gene Symbol: alyref
Alias: tho4|thoc4|zgc:171753
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 3031 bases
Position: chr7:19280440-19283470
Accession: 103044901
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000007562	RRM_1	PF00076.22	1.4e-13	1	1
ENSAMXP00000007564	RRM_1	PF00076.22	1.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000007562	-	843	XM_007241718	ENSAMXP00000007562	280 (aa)	XP_007241780	W5KJ00
ENSAMXT00000007564	-	942	-	ENSAMXP00000007564	313 (aa)	-	W5KJ02

Gene Model

Click here to download ENSAMXG00000007359's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG
amex03015	mRNA surveillance pathway	KEGG
amex03040	Spliceosome	KEGG
amex05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000007359's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000007359	alyref	100	55.477	ENSAPOG00000000183	-	100	53.710	Acanthochromis_polyacanthus
ENSAMXG00000007359	alyref	100	50.345	ENSACIG00000020351	-	100	52.069	Amphilophus_citrinellus
ENSAMXG00000007359	alyref	99	73.285	ENSACIG00000006351	alyref	98	72.760	Amphilophus_citrinellus
ENSAMXG00000007359	alyref	100	73.571	ENSAOCG00000014012	alyref	100	73.571	Amphiprion_ocellaris
ENSAMXG00000007359	alyref	100	54.770	ENSAOCG00000019305	-	100	54.064	Amphiprion_ocellaris
ENSAMXG00000007359	alyref	100	73.571	ENSAPEG00000014603	alyref	100	73.571	Amphiprion_percula
ENSAMXG00000007359	alyref	100	54.770	ENSAPEG00000013527	-	100	53.710	Amphiprion_percula
ENSAMXG00000007359	alyref	100	70.775	ENSATEG00000004307	alyref	100	72.887	Anabas_testudineus
ENSAMXG00000007359	alyref	100	55.830	ENSATEG00000000382	-	100	53.004	Anabas_testudineus
ENSAMXG00000007359	alyref	100	73.665	ENSACLG00000008432	alyref	99	75.180	Astatotilapia_calliptera
ENSAMXG00000007359	alyref	100	53.472	ENSACLG00000010184	-	100	54.196	Astatotilapia_calliptera
ENSAMXG00000007359	alyref	99	50.890	ENSCING00000013568	-	99	46.528	Ciona_intestinalis
ENSAMXG00000007359	alyref	99	49.640	ENSCSAVG00000003324	-	71	56.566	Ciona_savignyi
ENSAMXG00000007359	alyref	100	73.404	ENSCSEG00000017800	alyref	100	71.886	Cynoglossus_semilaevis
ENSAMXG00000007359	alyref	100	75.714	ENSCVAG00000014869	alyref	100	73.929	Cyprinodon_variegatus
ENSAMXG00000007359	alyref	100	47.872	ENSCVAG00000007789	-	100	45.965	Cyprinodon_variegatus
ENSAMXG00000007359	alyref	100	79.505	ENSDARG00000077732	alyref	100	77.739	Danio_rerio
ENSAMXG00000007359	alyref	98	44.746	FBgn0010774	Ref1	71	44.444	Drosophila_melanogaster
ENSAMXG00000007359	alyref	99	50.181	ENSEBUG00000008253	alyref	95	48.375	Eptatretus_burgeri
ENSAMXG00000007359	alyref	70	47.783	ENSEBUG00000006305	alyref	100	40.845	Eptatretus_burgeri
ENSAMXG00000007359	alyref	100	75.714	ENSELUG00000017178	alyref	100	71.530	Esox_lucius
ENSAMXG00000007359	alyref	100	65.845	ENSELUG00000008849	-	100	65.141	Esox_lucius
ENSAMXG00000007359	alyref	58	78.049	ENSFALG00000011923	-	97	76.101	Ficedula_albicollis
ENSAMXG00000007359	alyref	100	75.357	ENSFHEG00000019426	alyref	100	72.143	Fundulus_heteroclitus
ENSAMXG00000007359	alyref	100	49.117	ENSFHEG00000004698	-	100	47.703	Fundulus_heteroclitus
ENSAMXG00000007359	alyref	68	57.286	ENSGMOG00000013122	-	100	58.549	Gadus_morhua
ENSAMXG00000007359	alyref	100	69.039	ENSGMOG00000009882	alyref	100	66.548	Gadus_morhua
ENSAMXG00000007359	alyref	100	47.350	ENSGAFG00000007573	-	100	46.643	Gambusia_affinis
ENSAMXG00000007359	alyref	100	75.000	ENSGAFG00000006014	alyref	100	70.714	Gambusia_affinis
ENSAMXG00000007359	alyref	100	54.545	ENSHBUG00000001454	-	100	54.895	Haplochromis_burtoni
ENSAMXG00000007359	alyref	100	73.665	ENSHBUG00000020196	alyref	99	75.180	Haplochromis_burtoni
ENSAMXG00000007359	alyref	98	48.029	ENSHCOG00000012825	-	97	45.263	Hippocampus_comes
ENSAMXG00000007359	alyref	100	77.936	ENSIPUG00000009469	alyref	100	76.157	Ictalurus_punctatus
ENSAMXG00000007359	alyref	73	62.500	ENSSTOG00000016570	-	99	62.802	Ictidomys_tridecemlineatus
ENSAMXG00000007359	alyref	100	51.418	ENSKMAG00000006462	-	100	51.228	Kryptolebias_marmoratus
ENSAMXG00000007359	alyref	100	76.157	ENSKMAG00000008912	alyref	100	75.357	Kryptolebias_marmoratus
ENSAMXG00000007359	alyref	100	49.169	ENSLBEG00000005387	-	66	53.922	Labrus_bergylta
ENSAMXG00000007359	alyref	100	74.643	ENSLBEG00000023118	alyref	89	75.451	Labrus_bergylta
ENSAMXG00000007359	alyref	99	49.123	ENSLBEG00000012930	-	99	45.423	Labrus_bergylta
ENSAMXG00000007359	alyref	77	73.516	ENSLOCG00000013879	alyref	89	73.148	Lepisosteus_oculatus
ENSAMXG00000007359	alyref	100	72.954	ENSMAMG00000003034	alyref	100	72.954	Mastacembelus_armatus
ENSAMXG00000007359	alyref	100	50.530	ENSMAMG00000005464	-	100	50.877	Mastacembelus_armatus
ENSAMXG00000007359	alyref	100	53.125	ENSMZEG00005012096	-	100	53.846	Maylandia_zebra
ENSAMXG00000007359	alyref	100	73.665	ENSMZEG00005008639	alyref	99	75.180	Maylandia_zebra
ENSAMXG00000007359	alyref	99	46.429	ENSMMOG00000007032	-	73	50.246	Mola_mola
ENSAMXG00000007359	alyref	99	75.090	ENSMMOG00000012458	alyref	96	73.646	Mola_mola
ENSAMXG00000007359	alyref	100	51.020	ENSMALG00000006054	-	100	50.000	Monopterus_albus
ENSAMXG00000007359	alyref	98	54.909	ENSMLUG00000022178	-	98	52.000	Myotis_lucifugus
ENSAMXG00000007359	alyref	100	56.747	ENSMLUG00000004098	-	100	55.714	Myotis_lucifugus
ENSAMXG00000007359	alyref	98	54.839	ENSMLUG00000030671	-	99	51.237	Myotis_lucifugus
ENSAMXG00000007359	alyref	98	54.704	ENSMLUG00000022467	-	98	51.064	Myotis_lucifugus
ENSAMXG00000007359	alyref	100	55.556	ENSMLUG00000006521	-	100	55.714	Myotis_lucifugus
ENSAMXG00000007359	alyref	98	51.579	ENSMLUG00000009247	-	98	49.462	Myotis_lucifugus
ENSAMXG00000007359	alyref	98	53.169	ENSMLUG00000028605	-	98	51.246	Myotis_lucifugus
ENSAMXG00000007359	alyref	100	58.188	ENSMLUG00000014372	-	100	54.804	Myotis_lucifugus
ENSAMXG00000007359	alyref	100	65.125	ENSNGAG00000022014	-	100	63.214	Nannospalax_galili
ENSAMXG00000007359	alyref	100	74.021	ENSNBRG00000001747	alyref	99	75.540	Neolamprologus_brichardi
ENSAMXG00000007359	alyref	100	54.196	ENSNBRG00000017460	-	100	54.930	Neolamprologus_brichardi
ENSAMXG00000007359	alyref	100	56.383	ENSONIG00000003296	-	100	56.738	Oreochromis_niloticus
ENSAMXG00000007359	alyref	100	72.183	ENSONIG00000019434	alyref	100	71.831	Oreochromis_niloticus
ENSAMXG00000007359	alyref	99	41.796	ENSORLG00000001620	-	56	48.598	Oryzias_latipes
ENSAMXG00000007359	alyref	100	72.857	ENSORLG00020011942	alyref	100	71.786	Oryzias_latipes_hni
ENSAMXG00000007359	alyref	100	48.264	ENSORLG00020015673	-	100	45.936	Oryzias_latipes_hni
ENSAMXG00000007359	alyref	100	73.929	ENSORLG00015022664	alyref	100	71.429	Oryzias_latipes_hsok
ENSAMXG00000007359	alyref	100	48.789	ENSORLG00015015143	-	100	46.996	Oryzias_latipes_hsok
ENSAMXG00000007359	alyref	99	50.178	ENSOMEG00000007158	-	99	47.872	Oryzias_melastigma
ENSAMXG00000007359	alyref	100	75.357	ENSOMEG00000019176	alyref	100	71.786	Oryzias_melastigma
ENSAMXG00000007359	alyref	70	73.846	ENSPPAG00000036403	-	84	63.636	Pan_paniscus
ENSAMXG00000007359	alyref	99	72.500	ENSPKIG00000006233	-	83	70.629	Paramormyrops_kingsleyae
ENSAMXG00000007359	alyref	100	76.429	ENSPKIG00000007070	alyref	100	74.643	Paramormyrops_kingsleyae
ENSAMXG00000007359	alyref	72	47.030	ENSPMGG00000012994	-	67	59.504	Periophthalmus_magnuspinnatus
ENSAMXG00000007359	alyref	99	68.817	ENSPMGG00000016600	alyref	90	68.953	Periophthalmus_magnuspinnatus
ENSAMXG00000007359	alyref	100	62.143	ENSPEMG00000016628	-	100	56.055	Peromyscus_maniculatus_bairdii
ENSAMXG00000007359	alyref	100	74.286	ENSPFOG00000022825	alyref	99	72.143	Poecilia_formosa
ENSAMXG00000007359	alyref	100	47.535	ENSPFOG00000017094	-	100	45.583	Poecilia_formosa
ENSAMXG00000007359	alyref	100	47.535	ENSPLAG00000014380	-	100	45.583	Poecilia_latipinna
ENSAMXG00000007359	alyref	100	74.286	ENSPLAG00000006948	alyref	100	73.214	Poecilia_latipinna
ENSAMXG00000007359	alyref	100	47.535	ENSPMEG00000023039	-	100	45.583	Poecilia_mexicana
ENSAMXG00000007359	alyref	100	74.286	ENSPMEG00000003547	alyref	100	72.143	Poecilia_mexicana
ENSAMXG00000007359	alyref	100	50.000	ENSPREG00000003649	-	100	47.331	Poecilia_reticulata
ENSAMXG00000007359	alyref	100	76.071	ENSPREG00000015795	alyref	100	73.571	Poecilia_reticulata
ENSAMXG00000007359	alyref	100	73.665	ENSPNYG00000017498	alyref	99	75.180	Pundamilia_nyererei
ENSAMXG00000007359	alyref	99	51.418	ENSPNYG00000002879	-	99	52.817	Pundamilia_nyererei
ENSAMXG00000007359	alyref	100	77.224	ENSPNAG00000002531	alyref	100	75.357	Pygocentrus_nattereri
ENSAMXG00000007359	alyref	72	75.124	ENSSBOG00000030924	-	87	73.500	Saimiri_boliviensis_boliviensis
ENSAMXG00000007359	alyref	99	52.759	ENSSHAG00000012866	-	78	57.674	Sarcophilus_harrisii
ENSAMXG00000007359	alyref	99	58.007	ENSSHAG00000000609	-	99	53.597	Sarcophilus_harrisii
ENSAMXG00000007359	alyref	69	78.646	ENSSFOG00015003678	alyref	83	73.958	Scleropages_formosus
ENSAMXG00000007359	alyref	77	81.860	ENSSFOG00015003923	alyref	73	79.070	Scleropages_formosus
ENSAMXG00000007359	alyref	100	75.714	ENSSMAG00000009283	alyref	100	73.929	Scophthalmus_maximus
ENSAMXG00000007359	alyref	100	51.379	ENSSMAG00000011169	-	100	53.659	Scophthalmus_maximus
ENSAMXG00000007359	alyref	100	73.929	ENSSDUG00000016158	alyref	100	73.571	Seriola_dumerili
ENSAMXG00000007359	alyref	100	72.598	ENSSLDG00000017803	alyref	100	74.021	Seriola_lalandi_dorsalis
ENSAMXG00000007359	alyref	99	55.357	ENSSPAG00000017028	-	96	54.676	Stegastes_partitus
ENSAMXG00000007359	alyref	100	50.685	ENSTRUG00000003051	-	100	48.239	Takifugu_rubripes
ENSAMXG00000007359	alyref	100	50.709	ENSTNIG00000014136	-	100	45.035	Tetraodon_nigroviridis
ENSAMXG00000007359	alyref	100	68.310	ENSTNIG00000011595	alyref	100	65.957	Tetraodon_nigroviridis
ENSAMXG00000007359	alyref	70	74.359	ENSVVUG00000000272	-	82	74.227	Vulpes_vulpes
ENSAMXG00000007359	alyref	99	74.007	ENSXCOG00000018047	alyref	99	69.892	Xiphophorus_couchianus
ENSAMXG00000007359	alyref	100	48.410	ENSXMAG00000018086	-	100	46.996	Xiphophorus_maculatus
ENSAMXG00000007359	alyref	99	74.007	ENSXMAG00000012218	alyref	99	69.892	Xiphophorus_maculatus