EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAMXG00000007421 (Gene tree)
Gene ID
103043442
Gene Symbol
snrpf
Alias
snrpfl
Full Name
small nuclear ribonucleoprotein polypeptide F
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Minus strand
Length
2653 bases
Position
chrAPWO02001311.1:114553-117205
Accession
103043442
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000007625LSMPF01423.223.5e-1611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000007625-258XM_015607464ENSAMXP0000000762585 (aa)XP_015462950W5KJ63
Gene Model
Click here to download ENSAMXG00000007421's gene model file
Pathways
Pathway IDPathway NameSource
amex03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000007421's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAMXG00000007421snrpf7650.000ENSAMXG00000038738lsm68350.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000007421snrpf8794.667ENSG00000139343SNRPF8794.667Homo_sapiens
ENSAMXG00000007421snrpf8697.297ENSAPOG00000003377snrpf5897.297Acanthochromis_polyacanthus
ENSAMXG00000007421snrpf8694.595ENSAMEG00000002166-8794.595Ailuropoda_melanoleuca
ENSAMXG00000007421snrpf8881.579ENSAMEG00000018718-8782.667Ailuropoda_melanoleuca
ENSAMXG00000007421snrpf8597.260ENSACIG00000013216snrpf8697.260Amphilophus_citrinellus
ENSAMXG00000007421snrpf8597.260ENSAOCG00000015108snrpf8697.260Amphiprion_ocellaris
ENSAMXG00000007421snrpf8597.260ENSAPEG00000022022snrpf8697.260Amphiprion_percula
ENSAMXG00000007421snrpf8597.260ENSATEG00000022625snrpf7897.260Anabas_testudineus
ENSAMXG00000007421snrpf8693.243ENSACAG00000014073SNRPF8593.243Anolis_carolinensis
ENSAMXG00000007421snrpf8765.333ENSANAG00000025860-8565.333Aotus_nancymaae
ENSAMXG00000007421snrpf8288.732ENSANAG00000020297-6588.732Aotus_nancymaae
ENSAMXG00000007421snrpf8794.667ENSANAG00000032845SNRPF8794.667Aotus_nancymaae
ENSAMXG00000007421snrpf8597.260ENSACLG00000016066snrpf8697.260Astatotilapia_calliptera
ENSAMXG00000007421snrpf8794.667ENSBTAG00000016271SNRPF8794.667Bos_taurus
ENSAMXG00000007421snrpf9191.026ENSBTAG00000050012-9390.667Bos_taurus
ENSAMXG00000007421snrpf8968.831WBGene00004918snr-58570.833Caenorhabditis_elegans
ENSAMXG00000007421snrpf8794.667ENSCJAG00000002705-8794.667Callithrix_jacchus
ENSAMXG00000007421snrpf8586.301ENSCAFG00000031151-8589.041Canis_familiaris
ENSAMXG00000007421snrpf8794.667ENSCAFG00000006395-6894.667Canis_familiaris
ENSAMXG00000007421snrpf8586.301ENSCAFG00020010823-8589.041Canis_lupus_dingo
ENSAMXG00000007421snrpf9183.333ENSCAFG00020013161-7491.429Canis_lupus_dingo
ENSAMXG00000007421snrpf8789.474ENSTSYG00000036502-8789.474Carlito_syrichta
ENSAMXG00000007421snrpf9488.889ENSTSYG00000031636-6190.411Carlito_syrichta
ENSAMXG00000007421snrpf8781.333ENSTSYG00000030635-8781.333Carlito_syrichta
ENSAMXG00000007421snrpf8694.595ENSCAPG00000007242SNRPF8794.595Cavia_aperea
ENSAMXG00000007421snrpf8794.667ENSCPOG00000013898SNRPF8794.667Cavia_porcellus
ENSAMXG00000007421snrpf10094.186ENSCCAG00000017356-8794.667Cebus_capucinus
ENSAMXG00000007421snrpf8794.667ENSCCAG00000037378-8794.667Cebus_capucinus
ENSAMXG00000007421snrpf10083.721ENSCCAG00000033627-5984.000Cebus_capucinus
ENSAMXG00000007421snrpf8794.667ENSCLAG00000007200SNRPF8794.667Chinchilla_lanigera
ENSAMXG00000007421snrpf8794.667ENSCSAG00000003602-6194.667Chlorocebus_sabaeus
ENSAMXG00000007421snrpf7595.312ENSCHOG00000009392SNRPF10095.312Choloepus_hoffmanni
ENSAMXG00000007421snrpf9989.412ENSCPBG00000024287-6090.541Chrysemys_picta_bellii
ENSAMXG00000007421snrpf10086.047ENSCPBG00000026463-8786.667Chrysemys_picta_bellii
ENSAMXG00000007421snrpf8786.667ENSCPBG00000006227-8786.667Chrysemys_picta_bellii
ENSAMXG00000007421snrpf10084.884ENSCPBG00000001985-8986.667Chrysemys_picta_bellii
ENSAMXG00000007421snrpf9984.706ENSCSAVG00000007498-8486.486Ciona_savignyi
ENSAMXG00000007421snrpf8794.667ENSCGRG00001017100-8794.667Cricetulus_griseus_chok1gshd
ENSAMXG00000007421snrpf8786.667ENSCGRG00001008965-5886.667Cricetulus_griseus_chok1gshd
ENSAMXG00000007421snrpf8794.667ENSCGRG00000000336-8794.667Cricetulus_griseus_crigri
ENSAMXG00000007421snrpf9387.500ENSCGRG00000018878-9486.667Cricetulus_griseus_crigri
ENSAMXG00000007421snrpf8796.000ENSCSEG00000004748snrpf8796.000Cynoglossus_semilaevis
ENSAMXG00000007421snrpf8697.297ENSCVAG00000000397snrpf5997.297Cyprinodon_variegatus
ENSAMXG00000007421snrpf8794.805ENSDARG00000105037snrpf8894.805Danio_rerio
ENSAMXG00000007421snrpf8793.333ENSDNOG00000048989-6793.333Dasypus_novemcinctus
ENSAMXG00000007421snrpf8778.667ENSDNOG00000049373-6578.667Dasypus_novemcinctus
ENSAMXG00000007421snrpf6891.525ENSDORG00000029740-7291.525Dipodomys_ordii
ENSAMXG00000007421snrpf8486.111ENSDORG00000025351-10086.111Dipodomys_ordii
ENSAMXG00000007421snrpf9875.000FBgn0000426SmF8378.082Drosophila_melanogaster
ENSAMXG00000007421snrpf8794.667ENSETEG00000001558-8794.667Echinops_telfairi
ENSAMXG00000007421snrpf8876.623ENSEBUG00000001793-7681.690Eptatretus_burgeri
ENSAMXG00000007421snrpf8794.667ENSECAG00000019817SNRPF6194.667Equus_caballus
ENSAMXG00000007421snrpf8694.595ENSEEUG00000013509SNRPF8794.595Erinaceus_europaeus
ENSAMXG00000007421snrpf10097.674ENSELUG00000003121RUXF10097.674Esox_lucius
ENSAMXG00000007421snrpf10094.186ENSELUG00000007737RUXF8696.000Esox_lucius
ENSAMXG00000007421snrpf8794.667ENSFCAG00000029966-8794.667Felis_catus
ENSAMXG00000007421snrpf8774.324ENSFCAG00000021942-8774.324Felis_catus
ENSAMXG00000007421snrpf9876.190ENSFCAG00000031148-6973.333Felis_catus
ENSAMXG00000007421snrpf8694.595ENSFALG00000010799SNRPF8694.595Ficedula_albicollis
ENSAMXG00000007421snrpf8794.667ENSFDAG00000002831-8794.667Fukomys_damarensis
ENSAMXG00000007421snrpf8697.297ENSFHEG00000003240snrpf6597.297Fundulus_heteroclitus
ENSAMXG00000007421snrpf8697.297ENSGMOG00000007741snrpf8797.297Gadus_morhua
ENSAMXG00000007421snrpf8794.667ENSGALG00000011409SNRPF8794.667Gallus_gallus
ENSAMXG00000007421snrpf8597.260ENSGAFG00000016187snrpf8497.260Gambusia_affinis
ENSAMXG00000007421snrpf9998.824ENSGACG00000020055snrpf10098.824Gasterosteus_aculeatus
ENSAMXG00000007421snrpf8783.784ENSGAGG00000020974-6283.784Gopherus_agassizii
ENSAMXG00000007421snrpf9287.342ENSGAGG00000022991-8089.706Gopherus_agassizii
ENSAMXG00000007421snrpf8082.609ENSGAGG00000014132-8382.609Gopherus_agassizii
ENSAMXG00000007421snrpf8687.838ENSGAGG00000012945-6989.333Gopherus_agassizii
ENSAMXG00000007421snrpf6985.000ENSGAGG00000011163-8687.755Gopherus_agassizii
ENSAMXG00000007421snrpf9272.152ENSGGOG00000039564-9070.667Gorilla_gorilla
ENSAMXG00000007421snrpf8794.667ENSGGOG00000001127-8794.667Gorilla_gorilla
ENSAMXG00000007421snrpf9876.190ENSGGOG00000039936-8373.333Gorilla_gorilla
ENSAMXG00000007421snrpf8794.667ENSHGLG00000009108SNRPF8794.667Heterocephalus_glaber_female
ENSAMXG00000007421snrpf8793.333ENSHGLG00000021172-8793.333Heterocephalus_glaber_female
ENSAMXG00000007421snrpf8694.595ENSHGLG00100008103-8794.595Heterocephalus_glaber_male
ENSAMXG00000007421snrpf8793.333ENSHGLG00100019596-8793.333Heterocephalus_glaber_male
ENSAMXG00000007421snrpf7386.957ENSHCOG00000018663snrpf5486.957Hippocampus_comes
ENSAMXG00000007421snrpf8797.333ENSIPUG00000018994snrpf8797.333Ictalurus_punctatus
ENSAMXG00000007421snrpf8794.667ENSSTOG00000010434-8794.667Ictidomys_tridecemlineatus
ENSAMXG00000007421snrpf8794.667ENSJJAG00000011272-8794.667Jaculus_jaculus
ENSAMXG00000007421snrpf10076.744ENSJJAG00000004558-8977.333Jaculus_jaculus
ENSAMXG00000007421snrpf10080.233ENSJJAG00000010502-8981.333Jaculus_jaculus
ENSAMXG00000007421snrpf7888.060ENSJJAG00000004828-8689.286Jaculus_jaculus
ENSAMXG00000007421snrpf8796.000ENSKMAG00000013566snrpf8796.000Kryptolebias_marmoratus
ENSAMXG00000007421snrpf8796.000ENSLBEG00000008800snrpf8796.000Labrus_bergylta
ENSAMXG00000007421snrpf8793.333ENSLACG00000002456-6493.333Latimeria_chalumnae
ENSAMXG00000007421snrpf10097.674ENSLOCG00000015744snrpf10097.674Lepisosteus_oculatus
ENSAMXG00000007421snrpf8694.595ENSLAFG00000017426SNRPF8694.595Loxodonta_africana
ENSAMXG00000007421snrpf8595.890ENSMAMG00000016593snrpf8695.890Mastacembelus_armatus
ENSAMXG00000007421snrpf8597.260ENSMZEG00005014701snrpf8697.260Maylandia_zebra
ENSAMXG00000007421snrpf8594.521ENSMGAG00000011453-6694.521Meleagris_gallopavo
ENSAMXG00000007421snrpf8790.667ENSMAUG00000008799-8790.667Mesocricetus_auratus
ENSAMXG00000007421snrpf7393.651ENSMAUG00000016909-8593.651Mesocricetus_auratus
ENSAMXG00000007421snrpf7186.885ENSMAUG00000010289-6690.000Mesocricetus_auratus
ENSAMXG00000007421snrpf7393.651ENSMAUG00000019737-8593.651Mesocricetus_auratus
ENSAMXG00000007421snrpf8788.000ENSMICG00000030494-6088.000Microcebus_murinus
ENSAMXG00000007421snrpf8794.667ENSMICG00000012153-8794.667Microcebus_murinus
ENSAMXG00000007421snrpf7977.941ENSMOCG00000020220-8777.941Microtus_ochrogaster
ENSAMXG00000007421snrpf8781.333ENSMOCG00000022166-8281.333Microtus_ochrogaster
ENSAMXG00000007421snrpf8794.667ENSMOCG00000020437Snrpf8794.667Microtus_ochrogaster
ENSAMXG00000007421snrpf9998.810ENSMMOG00000007127snrpf10098.810Mola_mola
ENSAMXG00000007421snrpf8794.667ENSMODG00000008091SNRPF6694.667Monodelphis_domestica
ENSAMXG00000007421snrpf8597.260ENSMALG00000012328snrpf8697.260Monopterus_albus
ENSAMXG00000007421snrpf8794.667MGP_CAROLIEiJ_G0015735-8794.667Mus_caroli
ENSAMXG00000007421snrpf8794.667ENSMUSG00000020018Snrpf8794.667Mus_musculus
ENSAMXG00000007421snrpf8794.667MGP_PahariEiJ_G0031350Snrpf8794.667Mus_pahari
ENSAMXG00000007421snrpf8794.667MGP_SPRETEiJ_G0016553Snrpf8794.667Mus_spretus
ENSAMXG00000007421snrpf8794.667ENSMPUG00000007176-6794.667Mustela_putorius_furo
ENSAMXG00000007421snrpf8794.667ENSMLUG00000027932-7194.667Myotis_lucifugus
ENSAMXG00000007421snrpf10075.581ENSMLUG00000026269-7173.333Myotis_lucifugus
ENSAMXG00000007421snrpf8694.595ENSMLUG00000013577-8794.595Myotis_lucifugus
ENSAMXG00000007421snrpf8794.667ENSMLUG00000026149-7194.667Myotis_lucifugus
ENSAMXG00000007421snrpf8794.667ENSMLUG00000029201-7194.667Myotis_lucifugus
ENSAMXG00000007421snrpf8794.667ENSNGAG00000024292-8794.667Nannospalax_galili
ENSAMXG00000007421snrpf7387.302ENSNGAG00000005851-7186.667Nannospalax_galili
ENSAMXG00000007421snrpf8697.297ENSNBRG00000011682snrpf7697.297Neolamprologus_brichardi
ENSAMXG00000007421snrpf8670.270ENSMEUG00000000671SNRPF8770.270Notamacropus_eugenii
ENSAMXG00000007421snrpf8794.667ENSODEG00000010328-8794.667Octodon_degus
ENSAMXG00000007421snrpf8793.333ENSOCUG00000010925SNRPF6693.333Oryctolagus_cuniculus
ENSAMXG00000007421snrpf99100.000ENSORLG00020008216snrpf100100.000Oryzias_latipes_hni
ENSAMXG00000007421snrpf99100.000ENSORLG00015007418snrpf100100.000Oryzias_latipes_hsok
ENSAMXG00000007421snrpf9898.810ENSOMEG00000003018snrpf9998.810Oryzias_melastigma
ENSAMXG00000007421snrpf8793.333ENSOGAG00000030323-8793.333Otolemur_garnettii
ENSAMXG00000007421snrpf8794.667ENSOARG00000011853-6594.667Ovis_aries
ENSAMXG00000007421snrpf9876.190ENSPPAG00000037544-8373.333Pan_paniscus
ENSAMXG00000007421snrpf9272.152ENSPPAG00000037479-9170.667Pan_paniscus
ENSAMXG00000007421snrpf9875.000ENSPPRG00000007449-7774.667Panthera_pardus
ENSAMXG00000007421snrpf8794.667ENSPPRG00000005875-8794.667Panthera_pardus
ENSAMXG00000007421snrpf9877.381ENSPTIG00000005117-8974.667Panthera_tigris_altaica
ENSAMXG00000007421snrpf8794.667ENSPTIG00000007520SNRPF8794.667Panthera_tigris_altaica
ENSAMXG00000007421snrpf9272.152ENSPTRG00000047717-9170.667Pan_troglodytes
ENSAMXG00000007421snrpf9876.190ENSPTRG00000043814-8373.333Pan_troglodytes
ENSAMXG00000007421snrpf8697.297ENSPKIG00000014784snrpf8197.297Paramormyrops_kingsleyae
ENSAMXG00000007421snrpf8694.595ENSPSIG00000016462SNRPF8694.595Pelodiscus_sinensis
ENSAMXG00000007421snrpf9998.810ENSPMGG00000023548snrpf10098.810Periophthalmus_magnuspinnatus
ENSAMXG00000007421snrpf8794.667ENSPEMG00000023326Snrpf8794.667Peromyscus_maniculatus_bairdii
ENSAMXG00000007421snrpf8597.260ENSPLAG00000023932snrpf8697.260Poecilia_latipinna
ENSAMXG00000007421snrpf8597.260ENSPMEG00000003377snrpf8697.260Poecilia_mexicana
ENSAMXG00000007421snrpf8597.260ENSPREG00000022635snrpf8497.260Poecilia_reticulata
ENSAMXG00000007421snrpf8794.667ENSPPYG00000004847-8794.667Pongo_abelii
ENSAMXG00000007421snrpf8794.667ENSPCOG00000023833-8794.667Propithecus_coquereli
ENSAMXG00000007421snrpf8794.667ENSPVAG00000009036SNRPF8794.667Pteropus_vampyrus
ENSAMXG00000007421snrpf8597.260ENSPNYG00000021712snrpf8697.260Pundamilia_nyererei
ENSAMXG00000007421snrpf9898.810ENSPNAG00000019117snrpf9998.810Pygocentrus_nattereri
ENSAMXG00000007421snrpf8794.667ENSRNOG00000005556Snrpf8794.667Rattus_norvegicus
ENSAMXG00000007421snrpf8792.000ENSRBIG00000030414-8792.000Rhinopithecus_bieti
ENSAMXG00000007421snrpf8792.000ENSRROG00000021975-8792.000Rhinopithecus_roxellana
ENSAMXG00000007421snrpf8157.746YPR182WSMX38357.746Saccharomyces_cerevisiae
ENSAMXG00000007421snrpf8774.359ENSSBOG00000027638-8874.359Saimiri_boliviensis_boliviensis
ENSAMXG00000007421snrpf8794.667ENSSBOG00000012868-8794.667Saimiri_boliviensis_boliviensis
ENSAMXG00000007421snrpf8780.000ENSSBOG00000032297-8680.000Saimiri_boliviensis_boliviensis
ENSAMXG00000007421snrpf8794.667ENSSBOG00000036179-8794.667Saimiri_boliviensis_boliviensis
ENSAMXG00000007421snrpf8694.595ENSSHAG00000012294SNRPF6794.595Sarcophilus_harrisii
ENSAMXG00000007421snrpf7498.413ENSSFOG00015021523snrpf9498.413Scleropages_formosus
ENSAMXG00000007421snrpf10097.674ENSSMAG00000005533snrpf9997.674Scophthalmus_maximus
ENSAMXG00000007421snrpf7598.438ENSSDUG00000016283snrpf7698.438Seriola_dumerili
ENSAMXG00000007421snrpf9368.750ENSSLDG00000003885-9071.622Seriola_lalandi_dorsalis
ENSAMXG00000007421snrpf8796.000ENSSLDG00000005119snrpf8796.000Seriola_lalandi_dorsalis
ENSAMXG00000007421snrpf8594.521ENSSPUG00000014590-8694.521Sphenodon_punctatus
ENSAMXG00000007421snrpf8697.297ENSSPAG00000003283snrpf8497.297Stegastes_partitus
ENSAMXG00000007421snrpf8794.667ENSSSCG00000000895SNRPF8794.667Sus_scrofa
ENSAMXG00000007421snrpf6794.828ENSTRUG00000014956snrpf8494.828Takifugu_rubripes
ENSAMXG00000007421snrpf8796.000ENSTNIG00000012672snrpf8796.000Tetraodon_nigroviridis
ENSAMXG00000007421snrpf8770.667ENSTTRG00000006070SNRPF8770.667Tursiops_truncatus
ENSAMXG00000007421snrpf10082.558ENSUAMG00000001101-8884.000Ursus_americanus
ENSAMXG00000007421snrpf8794.667ENSUAMG00000008176-8794.667Ursus_americanus
ENSAMXG00000007421snrpf8784.000ENSUMAG00000006177-8884.000Ursus_maritimus
ENSAMXG00000007421snrpf8794.667ENSUMAG00000003528-8794.667Ursus_maritimus
ENSAMXG00000007421snrpf8794.667ENSVPAG00000008712-8794.667Vicugna_pacos
ENSAMXG00000007421snrpf9187.179ENSVVUG00000023821-9686.667Vulpes_vulpes
ENSAMXG00000007421snrpf8673.684ENSXETG00000021630snrpf8771.053Xenopus_tropicalis
ENSAMXG00000007421snrpf8597.260ENSXCOG00000013860snrpf8497.260Xiphophorus_couchianus
ENSAMXG00000007421snrpf8597.260ENSXMAG00000015448snrpf8697.260Xiphophorus_maculatus

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