EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000007650 (Gene tree)
Gene ID: 103026776
Gene Symbol: pym1
Alias: wibg|zgc:65891|zgc:77281
Full Name: PYM homolog 1%2C exon junction complex associated factor
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 4837 bases
Position: chr6:1760783-1765619
Accession: 103026776
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000007861	Mago-bind	PF09282.10	2.3e-13	1	1
ENSAMXP00000028072	Mago-bind	PF09282.10	3.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000007861	-	591	-	ENSAMXP00000007861	196 (aa)	-	W5KJU9
ENSAMXT00000043136	-	2772	XM_015603140	ENSAMXP00000028072	247 (aa)	XP_015458626	UPI000BBDA3C7

Gene Model

Click here to download ENSAMXG00000007650's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03013	RNA transport	KEGG
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000007650's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000007650	pym1	94	60.194	ENSG00000170473	PYM1	100	57.339	Homo_sapiens
ENSAMXG00000007650	pym1	98	62.212	ENSAPOG00000023045	pym1	99	65.072	Acanthochromis_polyacanthus
ENSAMXG00000007650	pym1	91	56.784	ENSAMEG00000003091	PYM1	99	54.206	Ailuropoda_melanoleuca
ENSAMXG00000007650	pym1	98	66.667	ENSACIG00000012769	pym1	99	63.134	Amphilophus_citrinellus
ENSAMXG00000007650	pym1	98	66.822	ENSAOCG00000021358	pym1	99	64.929	Amphiprion_ocellaris
ENSAMXG00000007650	pym1	98	66.822	ENSAPEG00000022679	pym1	99	64.929	Amphiprion_percula
ENSAMXG00000007650	pym1	98	65.403	ENSATEG00000024022	pym1	99	64.019	Anabas_testudineus
ENSAMXG00000007650	pym1	94	57.692	ENSACAG00000005714	PYM1	100	55.000	Anolis_carolinensis
ENSAMXG00000007650	pym1	94	60.194	ENSANAG00000036967	PYM1	100	57.339	Aotus_nancymaae
ENSAMXG00000007650	pym1	94	59.223	ENSBTAG00000031146	PYM1	100	57.339	Bos_taurus
ENSAMXG00000007650	pym1	94	60.194	ENSCJAG00000041077	PYM1	100	57.339	Callithrix_jacchus
ENSAMXG00000007650	pym1	94	60.194	ENSCAFG00000000076	PYM1	100	57.339	Canis_familiaris
ENSAMXG00000007650	pym1	94	60.194	ENSCAFG00020026099	PYM1	100	57.339	Canis_lupus_dingo
ENSAMXG00000007650	pym1	94	58.738	ENSCHIG00000026207	PYM1	100	56.881	Capra_hircus
ENSAMXG00000007650	pym1	94	60.680	ENSTSYG00000000787	PYM1	100	57.798	Carlito_syrichta
ENSAMXG00000007650	pym1	88	57.732	ENSCAPG00000010374	PYM1	100	54.854	Cavia_aperea
ENSAMXG00000007650	pym1	94	59.223	ENSCPOG00000031546	PYM1	100	56.422	Cavia_porcellus
ENSAMXG00000007650	pym1	94	60.194	ENSCCAG00000026187	PYM1	100	57.339	Cebus_capucinus
ENSAMXG00000007650	pym1	94	60.194	ENSCATG00000018801	PYM1	100	57.339	Cercocebus_atys
ENSAMXG00000007650	pym1	94	57.767	ENSCLAG00000007964	PYM1	100	55.963	Chinchilla_lanigera
ENSAMXG00000007650	pym1	89	58.974	ENSCSAG00000005291	PYM1	98	56.039	Chlorocebus_sabaeus
ENSAMXG00000007650	pym1	98	35.238	ENSCING00000006448	-	99	38.278	Ciona_intestinalis
ENSAMXG00000007650	pym1	98	36.667	ENSCSAVG00000009805	-	94	38.278	Ciona_savignyi
ENSAMXG00000007650	pym1	94	60.194	ENSCANG00000020338	-	100	57.339	Colobus_angolensis_palliatus
ENSAMXG00000007650	pym1	99	52.439	ENSCANG00000019757	-	85	56.158	Colobus_angolensis_palliatus
ENSAMXG00000007650	pym1	94	57.767	ENSCGRG00001018051	-	100	54.587	Cricetulus_griseus_chok1gshd
ENSAMXG00000007650	pym1	87	54.696	ENSCGRG00001004231	-	98	51.220	Cricetulus_griseus_chok1gshd
ENSAMXG00000007650	pym1	87	54.696	ENSCGRG00000018933	-	98	51.220	Cricetulus_griseus_crigri
ENSAMXG00000007650	pym1	94	57.767	ENSCGRG00000012495	-	100	54.587	Cricetulus_griseus_crigri
ENSAMXG00000007650	pym1	94	67.347	ENSCSEG00000021531	pym1	99	62.439	Cynoglossus_semilaevis
ENSAMXG00000007650	pym1	97	64.115	ENSCVAG00000017360	pym1	87	63.636	Cyprinodon_variegatus
ENSAMXG00000007650	pym1	99	58.173	ENSDARG00000046024	pym1	99	57.073	Danio_rerio
ENSAMXG00000007650	pym1	92	58.621	ENSDNOG00000048414	PYM1	92	55.046	Dasypus_novemcinctus
ENSAMXG00000007650	pym1	94	59.709	ENSDORG00000029448	Pym1	100	56.881	Dipodomys_ordii
ENSAMXG00000007650	pym1	99	38.537	FBgn0034918	Pym	98	36.585	Drosophila_melanogaster
ENSAMXG00000007650	pym1	89	55.897	ENSETEG00000004461	-	100	53.140	Echinops_telfairi
ENSAMXG00000007650	pym1	92	54.726	ENSEASG00005002271	PYM1	86	54.146	Equus_asinus_asinus
ENSAMXG00000007650	pym1	94	59.223	ENSECAG00000011870	PYM1	100	56.422	Equus_caballus
ENSAMXG00000007650	pym1	94	63.682	ENSELUG00000024250	pym1	99	64.532	Esox_lucius
ENSAMXG00000007650	pym1	94	59.709	ENSFCAG00000013967	PYM1	100	56.881	Felis_catus
ENSAMXG00000007650	pym1	94	61.165	ENSFDAG00000006314	PYM1	100	59.633	Fukomys_damarensis
ENSAMXG00000007650	pym1	94	60.766	ENSFHEG00000005884	pym1	99	64.953	Fundulus_heteroclitus
ENSAMXG00000007650	pym1	93	61.929	ENSGMOG00000007239	pym1	98	61.463	Gadus_morhua
ENSAMXG00000007650	pym1	94	62.439	ENSGALG00000046169	PYM1	100	58.525	Gallus_gallus
ENSAMXG00000007650	pym1	98	61.751	ENSGAFG00000003280	pym1	99	64.651	Gambusia_affinis
ENSAMXG00000007650	pym1	100	57.547	ENSGACG00000010703	pym1	99	60.099	Gasterosteus_aculeatus
ENSAMXG00000007650	pym1	91	53.774	ENSGAGG00000001973	PYM1	89	53.953	Gopherus_agassizii
ENSAMXG00000007650	pym1	94	59.709	ENSGGOG00000043246	PYM1	100	56.881	Gorilla_gorilla
ENSAMXG00000007650	pym1	94	68.449	ENSHBUG00000012719	pym1	98	71.574	Haplochromis_burtoni
ENSAMXG00000007650	pym1	92	61.084	ENSHGLG00000017155	PYM1	100	57.339	Heterocephalus_glaber_female
ENSAMXG00000007650	pym1	92	61.084	ENSHGLG00100015341	PYM1	100	57.339	Heterocephalus_glaber_male
ENSAMXG00000007650	pym1	99	60.766	ENSHCOG00000007987	pym1	86	61.463	Hippocampus_comes
ENSAMXG00000007650	pym1	100	77.295	ENSIPUG00000005975	wibga	100	75.845	Ictalurus_punctatus
ENSAMXG00000007650	pym1	94	59.709	ENSSTOG00000014206	PYM1	100	56.422	Ictidomys_tridecemlineatus
ENSAMXG00000007650	pym1	94	59.113	ENSJJAG00000013338	Pym1	100	56.279	Jaculus_jaculus
ENSAMXG00000007650	pym1	98	58.667	ENSKMAG00000006351	pym1	99	64.220	Kryptolebias_marmoratus
ENSAMXG00000007650	pym1	98	60.664	ENSLBEG00000015707	pym1	99	60.190	Labrus_bergylta
ENSAMXG00000007650	pym1	89	58.621	ENSLACG00000014398	PYM1	95	57.547	Latimeria_chalumnae
ENSAMXG00000007650	pym1	94	60.680	ENSLAFG00000002369	PYM1	100	57.798	Loxodonta_africana
ENSAMXG00000007650	pym1	94	60.194	ENSMFAG00000003048	PYM1	100	57.339	Macaca_fascicularis
ENSAMXG00000007650	pym1	94	60.194	ENSMMUG00000011002	PYM1	100	57.339	Macaca_mulatta
ENSAMXG00000007650	pym1	94	60.194	ENSMNEG00000034677	PYM1	100	57.339	Macaca_nemestrina
ENSAMXG00000007650	pym1	94	60.194	ENSMLEG00000007971	PYM1	100	57.339	Mandrillus_leucophaeus
ENSAMXG00000007650	pym1	98	60.633	ENSMAMG00000001588	pym1	99	64.186	Mastacembelus_armatus
ENSAMXG00000007650	pym1	94	68.449	ENSMZEG00005026458	pym1	98	71.066	Maylandia_zebra
ENSAMXG00000007650	pym1	94	58.252	ENSMAUG00000007318	Pym1	100	55.046	Mesocricetus_auratus
ENSAMXG00000007650	pym1	94	59.223	ENSMICG00000032962	PYM1	100	56.422	Microcebus_murinus
ENSAMXG00000007650	pym1	94	56.311	ENSMOCG00000010208	Pym1	100	52.752	Microtus_ochrogaster
ENSAMXG00000007650	pym1	98	66.495	ENSMMOG00000009301	pym1	98	68.367	Mola_mola
ENSAMXG00000007650	pym1	98	62.791	ENSMALG00000013496	pym1	99	63.850	Monopterus_albus
ENSAMXG00000007650	pym1	92	59.113	MGP_CAROLIEiJ_G0015953	Pym1	100	55.046	Mus_caroli
ENSAMXG00000007650	pym1	92	59.113	ENSMUSG00000064030	Pym1	100	55.046	Mus_musculus
ENSAMXG00000007650	pym1	92	59.000	MGP_PahariEiJ_G0031131	Pym1	100	54.884	Mus_pahari
ENSAMXG00000007650	pym1	92	59.113	MGP_SPRETEiJ_G0016778	Pym1	100	55.046	Mus_spretus
ENSAMXG00000007650	pym1	94	59.709	ENSMPUG00000000931	PYM1	100	56.881	Mustela_putorius_furo
ENSAMXG00000007650	pym1	92	57.921	ENSMLUG00000003586	PYM1	100	54.378	Myotis_lucifugus
ENSAMXG00000007650	pym1	89	55.612	ENSNGAG00000019207	Pym1	94	52.885	Nannospalax_galili
ENSAMXG00000007650	pym1	98	65.888	ENSNBRG00000006951	pym1	99	65.403	Neolamprologus_brichardi
ENSAMXG00000007650	pym1	94	60.194	ENSNLEG00000017588	PYM1	100	57.339	Nomascus_leucogenys
ENSAMXG00000007650	pym1	89	50.685	ENSMEUG00000001017	PYM1	100	50.971	Notamacropus_eugenii
ENSAMXG00000007650	pym1	92	54.229	ENSOPRG00000007797	PYM1	97	52.582	Ochotona_princeps
ENSAMXG00000007650	pym1	94	60.194	ENSODEG00000004289	PYM1	100	57.339	Octodon_degus
ENSAMXG00000007650	pym1	94	65.385	ENSONIG00000016740	pym1	99	64.623	Oreochromis_niloticus
ENSAMXG00000007650	pym1	89	58.462	ENSOCUG00000025969	PYM1	86	55.072	Oryctolagus_cuniculus
ENSAMXG00000007650	pym1	99	65.116	ENSORLG00000030592	pym1	99	63.721	Oryzias_latipes
ENSAMXG00000007650	pym1	99	64.651	ENSORLG00020011264	pym1	99	64.651	Oryzias_latipes_hni
ENSAMXG00000007650	pym1	99	65.116	ENSORLG00015005287	pym1	99	64.186	Oryzias_latipes_hsok
ENSAMXG00000007650	pym1	99	64.486	ENSOMEG00000022250	pym1	99	64.486	Oryzias_melastigma
ENSAMXG00000007650	pym1	89	59.487	ENSOGAG00000007038	PYM1	94	56.522	Otolemur_garnettii
ENSAMXG00000007650	pym1	94	58.738	ENSOARG00000010856	PYM1	100	56.881	Ovis_aries
ENSAMXG00000007650	pym1	94	60.194	ENSPPAG00000043630	PYM1	100	57.339	Pan_paniscus
ENSAMXG00000007650	pym1	94	58.738	ENSPPRG00000013243	PYM1	100	55.963	Panthera_pardus
ENSAMXG00000007650	pym1	94	59.709	ENSPTIG00000017380	PYM1	100	56.881	Panthera_tigris_altaica
ENSAMXG00000007650	pym1	94	60.194	ENSPTRG00000005067	PYM1	100	57.339	Pan_troglodytes
ENSAMXG00000007650	pym1	94	60.194	ENSPANG00000009562	PYM1	100	57.339	Papio_anubis
ENSAMXG00000007650	pym1	100	69.048	ENSPKIG00000006301	pym1	100	68.571	Paramormyrops_kingsleyae
ENSAMXG00000007650	pym1	94	52.857	ENSPSIG00000003043	PYM1	100	53.153	Pelodiscus_sinensis
ENSAMXG00000007650	pym1	100	67.327	ENSPMGG00000023161	pym1	100	65.500	Periophthalmus_magnuspinnatus
ENSAMXG00000007650	pym1	94	57.767	ENSPEMG00000009372	Pym1	100	54.587	Peromyscus_maniculatus_bairdii
ENSAMXG00000007650	pym1	89	50.679	ENSPCIG00000024658	PYM1	93	51.691	Phascolarctos_cinereus
ENSAMXG00000007650	pym1	99	62.500	ENSPFOG00000008193	pym1	99	65.714	Poecilia_formosa
ENSAMXG00000007650	pym1	98	62.551	ENSPLAG00000009228	pym1	99	64.953	Poecilia_latipinna
ENSAMXG00000007650	pym1	99	61.364	ENSPMEG00000001505	pym1	99	64.953	Poecilia_mexicana
ENSAMXG00000007650	pym1	90	58.883	ENSPPYG00000004635	PYM1	98	56.039	Pongo_abelii
ENSAMXG00000007650	pym1	94	60.194	ENSPCOG00000019706	PYM1	100	57.339	Propithecus_coquereli
ENSAMXG00000007650	pym1	90	58.883	ENSPVAG00000011437	PYM1	99	56.938	Pteropus_vampyrus
ENSAMXG00000007650	pym1	94	67.380	ENSPNYG00000012871	pym1	98	70.051	Pundamilia_nyererei
ENSAMXG00000007650	pym1	100	78.469	ENSPNAG00000018833	pym1	90	95.918	Pygocentrus_nattereri
ENSAMXG00000007650	pym1	78	50.581	ENSRNOG00000049415	AABR07055413.1	100	43.243	Rattus_norvegicus
ENSAMXG00000007650	pym1	92	55.721	ENSRNOG00000058130	Pym1	98	52.778	Rattus_norvegicus
ENSAMXG00000007650	pym1	94	56.311	ENSRBIG00000033362	PYM1	100	53.670	Rhinopithecus_bieti
ENSAMXG00000007650	pym1	94	60.194	ENSRROG00000043620	PYM1	100	57.339	Rhinopithecus_roxellana
ENSAMXG00000007650	pym1	94	60.194	ENSSBOG00000029393	PYM1	100	57.339	Saimiri_boliviensis_boliviensis
ENSAMXG00000007650	pym1	93	53.913	ENSSHAG00000008280	PYM1	100	53.670	Sarcophilus_harrisii
ENSAMXG00000007650	pym1	92	71.053	ENSSFOG00015021475	pym1	98	68.812	Scleropages_formosus
ENSAMXG00000007650	pym1	99	64.929	ENSSMAG00000020912	pym1	99	64.115	Scophthalmus_maximus
ENSAMXG00000007650	pym1	98	64.151	ENSSDUG00000001807	pym1	99	59.633	Seriola_dumerili
ENSAMXG00000007650	pym1	98	63.084	ENSSLDG00000013730	pym1	99	62.617	Seriola_lalandi_dorsalis
ENSAMXG00000007650	pym1	89	57.949	ENSSARG00000009569	PYM1	100	54.589	Sorex_araneus
ENSAMXG00000007650	pym1	89	56.701	ENSSPUG00000015059	PYM1	97	53.302	Sphenodon_punctatus
ENSAMXG00000007650	pym1	99	63.964	ENSSPAG00000020100	pym1	99	66.197	Stegastes_partitus
ENSAMXG00000007650	pym1	94	58.738	ENSSSCG00000040825	PYM1	100	56.881	Sus_scrofa
ENSAMXG00000007650	pym1	99	67.606	ENSTRUG00000021367	pym1	100	66.038	Takifugu_rubripes
ENSAMXG00000007650	pym1	99	68.812	ENSTNIG00000012534	pym1	99	68.657	Tetraodon_nigroviridis
ENSAMXG00000007650	pym1	87	55.729	ENSTBEG00000004208	PYM1	100	52.657	Tupaia_belangeri
ENSAMXG00000007650	pym1	90	57.360	ENSTTRG00000014971	PYM1	99	55.981	Tursiops_truncatus
ENSAMXG00000007650	pym1	94	58.738	ENSUAMG00000014521	PYM1	100	56.881	Ursus_americanus
ENSAMXG00000007650	pym1	91	55.779	ENSUMAG00000016241	PYM1	90	53.271	Ursus_maritimus
ENSAMXG00000007650	pym1	94	58.738	ENSVVUG00000022749	PYM1	100	55.963	Vulpes_vulpes
ENSAMXG00000007650	pym1	94	61.000	ENSXETG00000021850	pym1	100	58.962	Xenopus_tropicalis
ENSAMXG00000007650	pym1	98	61.728	ENSXMAG00000011649	pym1	99	64.019	Xiphophorus_maculatus