EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000007929 (Gene tree)
Gene ID: 103042319
Gene Symbol: sf3b2
Alias: fb53c07|wu:fb53c07|wu:fb93b08|zgc:136773
Full Name: splicing factor 3b subunit 2
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 20382 bases
Position: chr16:15300111-15320492
Accession: 103042319
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000037966	DUF382	PF04037.13	1.6e-58	1	1
ENSAMXP00000008153	DUF382	PF04037.13	2.3e-58	1	1
ENSAMXP00000008153	SAP	PF02037.27	9.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000008153	-	3123	XM_007236090	ENSAMXP00000008153	886 (aa)	XP_007236152	W5KKP1
ENSAMXT00000041766	-	2100	-	ENSAMXP00000037966	699 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000007929's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000007929's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000007929	sf3b2	86	77.237	ENSG00000087365	SF3B2	99	89.206	Homo_sapiens
ENSAMXG00000007929	sf3b2	97	76.217	ENSAPOG00000001974	sf3b2	96	76.131	Acanthochromis_polyacanthus
ENSAMXG00000007929	sf3b2	86	77.429	ENSAMEG00000017206	SF3B2	84	71.131	Ailuropoda_melanoleuca
ENSAMXG00000007929	sf3b2	100	73.224	ENSACIG00000000624	sf3b2	100	73.407	Amphilophus_citrinellus
ENSAMXG00000007929	sf3b2	100	78.011	ENSAOCG00000009207	sf3b2	100	77.473	Amphiprion_ocellaris
ENSAMXG00000007929	sf3b2	100	78.319	ENSAPEG00000002762	sf3b2	100	75.607	Amphiprion_percula
ENSAMXG00000007929	sf3b2	96	59.944	ENSACAG00000008615	SF3B2	59	71.321	Anolis_carolinensis
ENSAMXG00000007929	sf3b2	86	77.237	ENSANAG00000029120	SF3B2	84	71.149	Aotus_nancymaae
ENSAMXG00000007929	sf3b2	100	76.027	ENSACLG00000014771	sf3b2	100	73.667	Astatotilapia_calliptera
ENSAMXG00000007929	sf3b2	86	77.273	ENSBTAG00000002778	SF3B2	84	72.338	Bos_taurus
ENSAMXG00000007929	sf3b2	77	50.000	WBGene00021004	sftb-2	88	50.281	Caenorhabditis_elegans
ENSAMXG00000007929	sf3b2	86	77.237	ENSCJAG00000001656	SF3B2	84	71.279	Callithrix_jacchus
ENSAMXG00000007929	sf3b2	86	77.865	ENSCAFG00000013033	SF3B2	84	71.354	Canis_familiaris
ENSAMXG00000007929	sf3b2	86	77.865	ENSCAFG00020015382	SF3B2	84	71.354	Canis_lupus_dingo
ENSAMXG00000007929	sf3b2	86	77.273	ENSCHIG00000011211	SF3B2	84	72.338	Capra_hircus
ENSAMXG00000007929	sf3b2	86	77.551	ENSTSYG00000000959	SF3B2	84	72.396	Carlito_syrichta
ENSAMXG00000007929	sf3b2	75	76.577	ENSCPOG00000008294	SF3B2	97	64.691	Cavia_porcellus
ENSAMXG00000007929	sf3b2	86	77.237	ENSCCAG00000035256	SF3B2	84	71.279	Cebus_capucinus
ENSAMXG00000007929	sf3b2	86	77.237	ENSCATG00000042240	SF3B2	86	71.540	Cercocebus_atys
ENSAMXG00000007929	sf3b2	86	77.429	ENSCLAG00000016852	SF3B2	84	70.511	Chinchilla_lanigera
ENSAMXG00000007929	sf3b2	86	77.237	ENSCSAG00000008121	SF3B2	84	71.279	Chlorocebus_sabaeus
ENSAMXG00000007929	sf3b2	89	84.000	ENSCHOG00000001476	SF3B2	69	77.000	Choloepus_hoffmanni
ENSAMXG00000007929	sf3b2	93	77.059	ENSCPBG00000022465	SF3B2	88	79.499	Chrysemys_picta_bellii
ENSAMXG00000007929	sf3b2	86	61.600	ENSCING00000005665	-	83	68.069	Ciona_intestinalis
ENSAMXG00000007929	sf3b2	76	66.728	ENSCSAVG00000002029	-	83	67.878	Ciona_savignyi
ENSAMXG00000007929	sf3b2	86	77.237	ENSCANG00000039680	SF3B2	84	71.279	Colobus_angolensis_palliatus
ENSAMXG00000007929	sf3b2	86	77.394	ENSCGRG00001015741	Sf3b2	84	70.221	Cricetulus_griseus_chok1gshd
ENSAMXG00000007929	sf3b2	86	77.394	ENSCGRG00000018110	Sf3b2	97	65.576	Cricetulus_griseus_crigri
ENSAMXG00000007929	sf3b2	100	69.966	ENSCSEG00000000230	sf3b2	100	69.516	Cynoglossus_semilaevis
ENSAMXG00000007929	sf3b2	93	76.341	ENSCVAG00000003357	sf3b2	100	73.696	Cyprinodon_variegatus
ENSAMXG00000007929	sf3b2	98	79.354	ENSDARG00000018049	sf3b2	99	78.431	Danio_rerio
ENSAMXG00000007929	sf3b2	86	77.116	ENSDNOG00000009484	SF3B2	92	71.838	Dasypus_novemcinctus
ENSAMXG00000007929	sf3b2	86	77.394	ENSDORG00000002495	Sf3b2	84	71.317	Dipodomys_ordii
ENSAMXG00000007929	sf3b2	61	81.019	ENSETEG00000020284	SF3B2	56	79.770	Echinops_telfairi
ENSAMXG00000007929	sf3b2	92	60.553	ENSEBUG00000013703	sf3b2	99	54.925	Eptatretus_burgeri
ENSAMXG00000007929	sf3b2	86	77.273	ENSEASG00005004508	SF3B2	84	71.651	Equus_asinus_asinus
ENSAMXG00000007929	sf3b2	86	77.273	ENSECAG00000024461	SF3B2	84	71.651	Equus_caballus
ENSAMXG00000007929	sf3b2	60	77.419	ENSEEUG00000014278	-	57	78.226	Erinaceus_europaeus
ENSAMXG00000007929	sf3b2	96	81.406	ENSELUG00000005586	sf3b2	100	75.858	Esox_lucius
ENSAMXG00000007929	sf3b2	86	77.551	ENSFCAG00000013289	SF3B2	84	71.224	Felis_catus
ENSAMXG00000007929	sf3b2	86	66.875	ENSFALG00000014653	SF3B2	91	68.470	Ficedula_albicollis
ENSAMXG00000007929	sf3b2	86	77.237	ENSFDAG00000019806	SF3B2	84	72.021	Fukomys_damarensis
ENSAMXG00000007929	sf3b2	93	74.454	ENSFHEG00000020968	sf3b2	100	73.487	Fundulus_heteroclitus
ENSAMXG00000007929	sf3b2	86	81.043	ENSGMOG00000012131	sf3b2	99	86.585	Gadus_morhua
ENSAMXG00000007929	sf3b2	100	75.824	ENSGAFG00000001675	sf3b2	100	74.176	Gambusia_affinis
ENSAMXG00000007929	sf3b2	74	89.792	ENSGACG00000019012	sf3b2	99	83.636	Gasterosteus_aculeatus
ENSAMXG00000007929	sf3b2	98	69.291	ENSGAGG00000023916	SF3B2	98	69.205	Gopherus_agassizii
ENSAMXG00000007929	sf3b2	77	87.465	ENSGGOG00000028448	SF3B2	83	87.465	Gorilla_gorilla
ENSAMXG00000007929	sf3b2	94	82.520	ENSHBUG00000017349	sf3b2	100	73.778	Haplochromis_burtoni
ENSAMXG00000007929	sf3b2	86	78.110	ENSHGLG00000010807	SF3B2	84	70.642	Heterocephalus_glaber_female
ENSAMXG00000007929	sf3b2	86	78.110	ENSHGLG00100006361	SF3B2	84	71.671	Heterocephalus_glaber_male
ENSAMXG00000007929	sf3b2	100	73.103	ENSHCOG00000016203	sf3b2	100	72.564	Hippocampus_comes
ENSAMXG00000007929	sf3b2	100	83.315	ENSIPUG00000009383	sf3b2	100	83.539	Ictalurus_punctatus
ENSAMXG00000007929	sf3b2	86	77.551	ENSSTOG00000028892	SF3B2	84	71.354	Ictidomys_tridecemlineatus
ENSAMXG00000007929	sf3b2	86	77.237	ENSJJAG00000018193	Sf3b2	84	70.210	Jaculus_jaculus
ENSAMXG00000007929	sf3b2	60	91.557	ENSKMAG00000020181	sf3b2	74	90.822	Kryptolebias_marmoratus
ENSAMXG00000007929	sf3b2	100	76.847	ENSLBEG00000027739	sf3b2	100	76.180	Labrus_bergylta
ENSAMXG00000007929	sf3b2	86	78.774	ENSLACG00000010429	SF3B2	85	70.947	Latimeria_chalumnae
ENSAMXG00000007929	sf3b2	86	77.237	ENSLAFG00000002128	SF3B2	83	70.926	Loxodonta_africana
ENSAMXG00000007929	sf3b2	86	77.116	ENSMFAG00000003064	SF3B2	86	71.447	Macaca_fascicularis
ENSAMXG00000007929	sf3b2	86	71.900	ENSMMUG00000011743	SF3B2	84	67.145	Macaca_mulatta
ENSAMXG00000007929	sf3b2	86	77.237	ENSMNEG00000034437	SF3B2	86	71.540	Macaca_nemestrina
ENSAMXG00000007929	sf3b2	86	76.923	ENSMLEG00000029373	SF3B2	86	72.266	Mandrillus_leucophaeus
ENSAMXG00000007929	sf3b2	100	77.253	ENSMAMG00000014103	sf3b2	100	77.473	Mastacembelus_armatus
ENSAMXG00000007929	sf3b2	100	76.027	ENSMZEG00005020789	sf3b2	100	73.667	Maylandia_zebra
ENSAMXG00000007929	sf3b2	51	87.778	ENSMAUG00000017040	Sf3b2	93	86.339	Mesocricetus_auratus
ENSAMXG00000007929	sf3b2	99	66.445	ENSMICG00000016942	-	85	69.668	Microcebus_murinus
ENSAMXG00000007929	sf3b2	86	77.080	ENSMICG00000008565	-	84	71.279	Microcebus_murinus
ENSAMXG00000007929	sf3b2	86	77.237	ENSMOCG00000003136	Sf3b2	84	70.091	Microtus_ochrogaster
ENSAMXG00000007929	sf3b2	100	74.637	ENSMMOG00000012928	sf3b2	73	84.702	Mola_mola
ENSAMXG00000007929	sf3b2	86	76.682	ENSMODG00000008490	-	91	71.447	Monodelphis_domestica
ENSAMXG00000007929	sf3b2	86	72.555	ENSMODG00000025020	-	100	72.699	Monodelphis_domestica
ENSAMXG00000007929	sf3b2	100	71.978	ENSMALG00000015137	sf3b2	74	90.440	Monopterus_albus
ENSAMXG00000007929	sf3b2	86	78.268	MGP_CAROLIEiJ_G0022539	Sf3b2	84	70.871	Mus_caroli
ENSAMXG00000007929	sf3b2	86	77.188	ENSMUSG00000024853	Sf3b2	84	70.481	Mus_musculus
ENSAMXG00000007929	sf3b2	86	77.080	MGP_PahariEiJ_G0014036	Sf3b2	84	70.481	Mus_pahari
ENSAMXG00000007929	sf3b2	86	77.188	MGP_SPRETEiJ_G0023453	Sf3b2	84	71.001	Mus_spretus
ENSAMXG00000007929	sf3b2	86	77.865	ENSMPUG00000011349	SF3B2	84	71.765	Mustela_putorius_furo
ENSAMXG00000007929	sf3b2	86	78.268	ENSMLUG00000011136	SF3B2	84	71.634	Myotis_lucifugus
ENSAMXG00000007929	sf3b2	86	77.080	ENSNGAG00000012103	Sf3b2	84	70.118	Nannospalax_galili
ENSAMXG00000007929	sf3b2	94	71.917	ENSNLEG00000006007	SF3B2	59	83.992	Nomascus_leucogenys
ENSAMXG00000007929	sf3b2	77	81.844	ENSMEUG00000000019	SF3B2	67	81.844	Notamacropus_eugenii
ENSAMXG00000007929	sf3b2	99	61.672	ENSODEG00000017764	SF3B2	97	62.925	Octodon_degus
ENSAMXG00000007929	sf3b2	100	76.542	ENSONIG00000013068	sf3b2	100	74.863	Oreochromis_niloticus
ENSAMXG00000007929	sf3b2	86	70.266	ENSOANG00000012482	SF3B2	83	81.109	Ornithorhynchus_anatinus
ENSAMXG00000007929	sf3b2	58	52.955	ENSOCUG00000024154	-	99	47.913	Oryctolagus_cuniculus
ENSAMXG00000007929	sf3b2	99	66.042	ENSOCUG00000015722	-	97	67.421	Oryctolagus_cuniculus
ENSAMXG00000007929	sf3b2	100	74.053	ENSORLG00000008235	sf3b2	84	77.368	Oryzias_latipes
ENSAMXG00000007929	sf3b2	100	74.053	ENSORLG00020005357	sf3b2	87	77.368	Oryzias_latipes_hni
ENSAMXG00000007929	sf3b2	98	78.571	ENSORLG00015022454	sf3b2	89	80.577	Oryzias_latipes_hsok
ENSAMXG00000007929	sf3b2	100	74.247	ENSOMEG00000017480	sf3b2	100	72.626	Oryzias_melastigma
ENSAMXG00000007929	sf3b2	81	80.822	ENSOGAG00000005799	SF3B2	59	87.429	Otolemur_garnettii
ENSAMXG00000007929	sf3b2	99	66.410	ENSOARG00000002125	SF3B2	100	72.318	Ovis_aries
ENSAMXG00000007929	sf3b2	86	77.237	ENSPPAG00000007359	SF3B2	84	71.279	Pan_paniscus
ENSAMXG00000007929	sf3b2	86	77.551	ENSPPRG00000013334	SF3B2	84	71.224	Panthera_pardus
ENSAMXG00000007929	sf3b2	86	77.551	ENSPTIG00000015022	SF3B2	84	71.224	Panthera_tigris_altaica
ENSAMXG00000007929	sf3b2	86	77.237	ENSPTRG00000003912	SF3B2	85	71.279	Pan_troglodytes
ENSAMXG00000007929	sf3b2	86	77.237	ENSPANG00000008593	SF3B2	86	71.540	Papio_anubis
ENSAMXG00000007929	sf3b2	96	83.651	ENSPKIG00000016576	sf3b2	94	82.335	Paramormyrops_kingsleyae
ENSAMXG00000007929	sf3b2	86	79.048	ENSPSIG00000003158	SF3B2	97	73.113	Pelodiscus_sinensis
ENSAMXG00000007929	sf3b2	92	74.541	ENSPMGG00000000819	sf3b2	93	74.603	Periophthalmus_magnuspinnatus
ENSAMXG00000007929	sf3b2	86	73.333	ENSPEMG00000015451	-	90	67.121	Peromyscus_maniculatus_bairdii
ENSAMXG00000007929	sf3b2	86	77.237	ENSPEMG00000015437	Sf3b2	84	70.221	Peromyscus_maniculatus_bairdii
ENSAMXG00000007929	sf3b2	86	76.599	ENSPCIG00000008381	SF3B2	87	71.632	Phascolarctos_cinereus
ENSAMXG00000007929	sf3b2	86	92.030	ENSPFOG00000002552	sf3b2	100	73.377	Poecilia_formosa
ENSAMXG00000007929	sf3b2	85	92.220	ENSPLAG00000001471	sf3b2	100	73.707	Poecilia_latipinna
ENSAMXG00000007929	sf3b2	86	91.841	ENSPMEG00000013180	sf3b2	100	73.568	Poecilia_mexicana
ENSAMXG00000007929	sf3b2	85	91.841	ENSPREG00000002665	sf3b2	100	73.846	Poecilia_reticulata
ENSAMXG00000007929	sf3b2	53	71.322	ENSPPYG00000003034	-	97	59.758	Pongo_abelii
ENSAMXG00000007929	sf3b2	86	76.923	ENSPCAG00000005129	SF3B2	84	72.585	Procavia_capensis
ENSAMXG00000007929	sf3b2	86	76.923	ENSPCOG00000025375	SF3B2	84	71.279	Propithecus_coquereli
ENSAMXG00000007929	sf3b2	60	89.720	ENSPVAG00000016975	-	52	88.479	Pteropus_vampyrus
ENSAMXG00000007929	sf3b2	54	93.421	ENSPVAG00000005466	-	78	93.421	Pteropus_vampyrus
ENSAMXG00000007929	sf3b2	93	75.499	ENSPNYG00000023594	sf3b2	100	76.902	Pundamilia_nyererei
ENSAMXG00000007929	sf3b2	100	88.939	ENSPNAG00000001891	sf3b2	100	89.050	Pygocentrus_nattereri
ENSAMXG00000007929	sf3b2	86	76.923	ENSRNOG00000020412	Sf3b2	84	69.961	Rattus_norvegicus
ENSAMXG00000007929	sf3b2	86	78.110	ENSRBIG00000034065	SF3B2	84	71.279	Rhinopithecus_bieti
ENSAMXG00000007929	sf3b2	86	78.110	ENSRROG00000034496	SF3B2	84	71.279	Rhinopithecus_roxellana
ENSAMXG00000007929	sf3b2	97	66.480	ENSSBOG00000026337	SF3B2	97	65.955	Saimiri_boliviensis_boliviensis
ENSAMXG00000007929	sf3b2	96	56.705	ENSSHAG00000018043	-	100	56.701	Sarcophilus_harrisii
ENSAMXG00000007929	sf3b2	86	73.543	ENSSHAG00000010933	-	83	69.531	Sarcophilus_harrisii
ENSAMXG00000007929	sf3b2	100	76.932	ENSSFOG00015021125	sf3b2	86	79.974	Scleropages_formosus
ENSAMXG00000007929	sf3b2	100	77.402	ENSSMAG00000004079	sf3b2	97	76.196	Scophthalmus_maximus
ENSAMXG00000007929	sf3b2	98	77.872	ENSSDUG00000008499	sf3b2	72	84.628	Seriola_dumerili
ENSAMXG00000007929	sf3b2	84	93.103	ENSSLDG00000006838	sf3b2	100	77.317	Seriola_lalandi_dorsalis
ENSAMXG00000007929	sf3b2	51	93.651	ENSSARG00000003707	-	50	93.651	Sorex_araneus
ENSAMXG00000007929	sf3b2	85	78.788	ENSSPUG00000009198	SF3B2	75	87.595	Sphenodon_punctatus
ENSAMXG00000007929	sf3b2	100	76.078	ENSSPAG00000004406	sf3b2	58	93.726	Stegastes_partitus
ENSAMXG00000007929	sf3b2	86	77.551	ENSSSCG00000012957	SF3B2	97	65.535	Sus_scrofa
ENSAMXG00000007929	sf3b2	99	73.684	ENSTRUG00000007611	sf3b2	93	76.935	Takifugu_rubripes
ENSAMXG00000007929	sf3b2	94	72.954	ENSTNIG00000007441	sf3b2	100	71.968	Tetraodon_nigroviridis
ENSAMXG00000007929	sf3b2	86	69.683	ENSTBEG00000004258	SF3B2	79	82.192	Tupaia_belangeri
ENSAMXG00000007929	sf3b2	86	77.080	ENSTTRG00000014339	SF3B2	84	71.354	Tursiops_truncatus
ENSAMXG00000007929	sf3b2	84	76.774	ENSUAMG00000020754	SF3B2	81	70.000	Ursus_americanus
ENSAMXG00000007929	sf3b2	86	77.551	ENSUMAG00000010994	SF3B2	84	71.224	Ursus_maritimus
ENSAMXG00000007929	sf3b2	59	76.613	ENSVPAG00000008695	SF3B2	62	77.419	Vicugna_pacos
ENSAMXG00000007929	sf3b2	86	77.865	ENSVVUG00000027029	SF3B2	84	71.354	Vulpes_vulpes
ENSAMXG00000007929	sf3b2	86	75.358	ENSXETG00000008422	sf3b2	84	74.629	Xenopus_tropicalis
ENSAMXG00000007929	sf3b2	93	82.979	ENSXCOG00000008943	sf3b2	91	81.069	Xiphophorus_couchianus
ENSAMXG00000007929	sf3b2	100	73.604	ENSXMAG00000008467	sf3b2	74	91.555	Xiphophorus_maculatus