EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000008271 (Gene tree)
Gene ID: 103029941
Gene Symbol: lsg1
Alias: fb99b06|wu:fb99b06|zgc:76988
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 14340 bases
Position: chr5:8361970-8376309
Accession: 103029941
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000008506	MMR_HSR1	PF01926.23	3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000008506	-	1926	XM_022669536	ENSAMXP00000008506	641 (aa)	XP_022525257	W5KLP4

Gene Model

Click here to download ENSAMXG00000008271's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000008271's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000008271	lsg1	99	63.389	ENSG00000041802	LSG1	98	73.563	Homo_sapiens
ENSAMXG00000008271	lsg1	100	73.457	ENSAPOG00000009694	lsg1	100	74.189	Acanthochromis_polyacanthus
ENSAMXG00000008271	lsg1	100	62.054	ENSAMEG00000009343	LSG1	100	61.947	Ailuropoda_melanoleuca
ENSAMXG00000008271	lsg1	98	74.092	ENSACIG00000012406	lsg1	100	73.570	Amphilophus_citrinellus
ENSAMXG00000008271	lsg1	100	73.498	ENSAOCG00000016066	lsg1	100	73.416	Amphiprion_ocellaris
ENSAMXG00000008271	lsg1	100	74.000	ENSAPEG00000003252	lsg1	100	73.313	Amphiprion_percula
ENSAMXG00000008271	lsg1	98	73.543	ENSATEG00000011794	lsg1	100	72.685	Anabas_testudineus
ENSAMXG00000008271	lsg1	95	60.126	ENSACAG00000004222	LSG1	100	59.844	Anolis_carolinensis
ENSAMXG00000008271	lsg1	99	63.609	ENSANAG00000021153	LSG1	99	63.731	Aotus_nancymaae
ENSAMXG00000008271	lsg1	100	73.171	ENSACLG00000000520	lsg1	100	72.741	Astatotilapia_calliptera
ENSAMXG00000008271	lsg1	99	63.872	ENSBTAG00000008461	LSG1	99	63.018	Bos_taurus
ENSAMXG00000008271	lsg1	69	50.510	WBGene00016907	C53H9.2	84	50.785	Caenorhabditis_elegans
ENSAMXG00000008271	lsg1	99	63.293	ENSCJAG00000013962	LSG1	99	62.537	Callithrix_jacchus
ENSAMXG00000008271	lsg1	95	64.659	ENSCAFG00000013445	LSG1	100	64.659	Canis_familiaris
ENSAMXG00000008271	lsg1	100	63.746	ENSCAFG00020002216	LSG1	100	63.746	Canis_lupus_dingo
ENSAMXG00000008271	lsg1	100	64.536	ENSCHIG00000015769	LSG1	100	64.536	Capra_hircus
ENSAMXG00000008271	lsg1	99	64.382	ENSTSYG00000001447	LSG1	99	64.555	Carlito_syrichta
ENSAMXG00000008271	lsg1	95	64.366	ENSCAPG00000009856	LSG1	99	64.401	Cavia_aperea
ENSAMXG00000008271	lsg1	99	63.142	ENSCCAG00000035744	LSG1	99	62.985	Cebus_capucinus
ENSAMXG00000008271	lsg1	99	63.389	ENSCATG00000042060	LSG1	99	62.388	Cercocebus_atys
ENSAMXG00000008271	lsg1	99	63.238	ENSCSAG00000008796	LSG1	92	63.433	Chlorocebus_sabaeus
ENSAMXG00000008271	lsg1	100	66.112	ENSCPBG00000015941	LSG1	83	66.617	Chrysemys_picta_bellii
ENSAMXG00000008271	lsg1	85	41.176	ENSCING00000007079	-	100	46.507	Ciona_intestinalis
ENSAMXG00000008271	lsg1	81	50.725	ENSCSAVG00000002514	-	93	54.812	Ciona_savignyi
ENSAMXG00000008271	lsg1	99	63.540	ENSCANG00000030709	LSG1	99	63.433	Colobus_angolensis_palliatus
ENSAMXG00000008271	lsg1	99	63.775	ENSCGRG00001019846	Lsg1	99	63.415	Cricetulus_griseus_chok1gshd
ENSAMXG00000008271	lsg1	99	63.418	ENSCGRG00000014617	Lsg1	99	63.063	Cricetulus_griseus_crigri
ENSAMXG00000008271	lsg1	98	73.618	ENSCSEG00000008522	lsg1	100	71.822	Cynoglossus_semilaevis
ENSAMXG00000008271	lsg1	98	73.217	ENSCVAG00000002484	lsg1	100	72.713	Cyprinodon_variegatus
ENSAMXG00000008271	lsg1	100	78.923	ENSDARG00000015352	lsg1	100	78.955	Danio_rerio
ENSAMXG00000008271	lsg1	99	62.575	ENSDNOG00000006224	LSG1	99	62.353	Dasypus_novemcinctus
ENSAMXG00000008271	lsg1	99	49.085	FBgn0266284	Ns3	99	48.171	Drosophila_melanogaster
ENSAMXG00000008271	lsg1	88	72.000	ENSETEG00000003888	LSG1	89	72.000	Echinops_telfairi
ENSAMXG00000008271	lsg1	89	55.690	ENSEBUG00000003119	lsg1	86	54.484	Eptatretus_burgeri
ENSAMXG00000008271	lsg1	99	61.752	ENSEASG00005000678	LSG1	99	62.819	Equus_asinus_asinus
ENSAMXG00000008271	lsg1	99	63.268	ENSECAG00000017659	LSG1	99	63.118	Equus_caballus
ENSAMXG00000008271	lsg1	86	60.684	ENSEEUG00000015217	LSG1	87	60.684	Erinaceus_europaeus
ENSAMXG00000008271	lsg1	100	71.081	ENSELUG00000023973	lsg1	100	71.385	Esox_lucius
ENSAMXG00000008271	lsg1	100	62.908	ENSFCAG00000024957	LSG1	100	62.054	Felis_catus
ENSAMXG00000008271	lsg1	98	58.815	ENSFALG00000007210	LSG1	94	60.611	Ficedula_albicollis
ENSAMXG00000008271	lsg1	99	62.557	ENSFDAG00000017373	LSG1	99	63.166	Fukomys_damarensis
ENSAMXG00000008271	lsg1	98	72.943	ENSFHEG00000003680	lsg1	99	72.068	Fundulus_heteroclitus
ENSAMXG00000008271	lsg1	98	69.085	ENSGMOG00000015834	lsg1	100	69.029	Gadus_morhua
ENSAMXG00000008271	lsg1	100	60.060	ENSGALG00000007058	LSG1	87	60.720	Gallus_gallus
ENSAMXG00000008271	lsg1	98	72.310	ENSGAFG00000015831	lsg1	99	71.716	Gambusia_affinis
ENSAMXG00000008271	lsg1	98	71.807	ENSGACG00000009323	lsg1	100	70.633	Gasterosteus_aculeatus
ENSAMXG00000008271	lsg1	99	63.881	ENSGGOG00000000520	LSG1	99	63.582	Gorilla_gorilla
ENSAMXG00000008271	lsg1	100	74.383	ENSHBUG00000005659	lsg1	100	73.570	Haplochromis_burtoni
ENSAMXG00000008271	lsg1	99	63.650	ENSHGLG00000017390	LSG1	99	63.142	Heterocephalus_glaber_female
ENSAMXG00000008271	lsg1	99	63.650	ENSHGLG00100018587	LSG1	99	63.142	Heterocephalus_glaber_male
ENSAMXG00000008271	lsg1	98	72.756	ENSHCOG00000016848	lsg1	100	71.736	Hippocampus_comes
ENSAMXG00000008271	lsg1	100	77.504	ENSIPUG00000008631	lsg1	100	78.120	Ictalurus_punctatus
ENSAMXG00000008271	lsg1	76	58.730	ENSSTOG00000010234	LSG1	92	59.369	Ictidomys_tridecemlineatus
ENSAMXG00000008271	lsg1	99	64.869	ENSJJAG00000015513	Lsg1	99	64.506	Jaculus_jaculus
ENSAMXG00000008271	lsg1	98	72.240	ENSKMAG00000009681	lsg1	100	70.170	Kryptolebias_marmoratus
ENSAMXG00000008271	lsg1	98	71.429	ENSLBEG00000024261	lsg1	100	70.000	Labrus_bergylta
ENSAMXG00000008271	lsg1	100	66.216	ENSLACG00000013399	LSG1	100	66.216	Latimeria_chalumnae
ENSAMXG00000008271	lsg1	98	71.451	ENSLOCG00000004918	lsg1	100	71.145	Lepisosteus_oculatus
ENSAMXG00000008271	lsg1	99	63.623	ENSLAFG00000012919	-	99	62.629	Loxodonta_africana
ENSAMXG00000008271	lsg1	99	63.238	ENSMFAG00000039903	LSG1	99	62.090	Macaca_fascicularis
ENSAMXG00000008271	lsg1	99	63.238	ENSMMUG00000010708	LSG1	99	63.433	Macaca_mulatta
ENSAMXG00000008271	lsg1	99	63.238	ENSMNEG00000031538	LSG1	99	62.239	Macaca_nemestrina
ENSAMXG00000008271	lsg1	99	63.238	ENSMLEG00000041184	LSG1	99	63.134	Mandrillus_leucophaeus
ENSAMXG00000008271	lsg1	100	71.077	ENSMAMG00000000470	lsg1	100	69.697	Mastacembelus_armatus
ENSAMXG00000008271	lsg1	100	74.383	ENSMZEG00005017865	lsg1	100	73.570	Maylandia_zebra
ENSAMXG00000008271	lsg1	89	60.840	ENSMGAG00000007050	LSG1	100	61.913	Meleagris_gallopavo
ENSAMXG00000008271	lsg1	93	61.639	ENSMAUG00000016976	Lsg1	94	62.295	Mesocricetus_auratus
ENSAMXG00000008271	lsg1	99	62.012	ENSMICG00000049087	LSG1	99	62.146	Microcebus_murinus
ENSAMXG00000008271	lsg1	99	63.063	ENSMOCG00000022136	Lsg1	99	62.819	Microtus_ochrogaster
ENSAMXG00000008271	lsg1	86	81.667	ENSMMOG00000008884	lsg1	100	75.472	Mola_mola
ENSAMXG00000008271	lsg1	99	55.075	ENSMODG00000019828	LSG1	99	53.869	Monodelphis_domestica
ENSAMXG00000008271	lsg1	99	64.787	MGP_CAROLIEiJ_G0020648	Lsg1	99	64.222	Mus_caroli
ENSAMXG00000008271	lsg1	99	64.787	ENSMUSG00000022538	Lsg1	99	65.244	Mus_musculus
ENSAMXG00000008271	lsg1	99	64.407	MGP_PahariEiJ_G0016352	Lsg1	99	64.145	Mus_pahari
ENSAMXG00000008271	lsg1	99	64.787	MGP_SPRETEiJ_G0021544	Lsg1	99	65.396	Mus_spretus
ENSAMXG00000008271	lsg1	100	63.554	ENSMPUG00000003734	LSG1	100	63.404	Mustela_putorius_furo
ENSAMXG00000008271	lsg1	100	63.910	ENSMLUG00000012548	LSG1	100	63.759	Myotis_lucifugus
ENSAMXG00000008271	lsg1	99	63.720	ENSNGAG00000021872	Lsg1	99	62.519	Nannospalax_galili
ENSAMXG00000008271	lsg1	99	63.731	ENSNLEG00000008293	LSG1	99	63.284	Nomascus_leucogenys
ENSAMXG00000008271	lsg1	67	76.289	ENSMEUG00000009041	-	83	76.289	Notamacropus_eugenii
ENSAMXG00000008271	lsg1	100	74.462	ENSONIG00000002635	lsg1	100	74.846	Oreochromis_niloticus
ENSAMXG00000008271	lsg1	95	64.984	ENSOANG00000012742	LSG1	99	64.669	Ornithorhynchus_anatinus
ENSAMXG00000008271	lsg1	99	63.801	ENSOCUG00000004817	LSG1	99	63.801	Oryctolagus_cuniculus
ENSAMXG00000008271	lsg1	98	69.906	ENSORLG00000007695	lsg1	100	69.124	Oryzias_latipes
ENSAMXG00000008271	lsg1	98	69.592	ENSORLG00020016286	lsg1	100	69.432	Oryzias_latipes_hni
ENSAMXG00000008271	lsg1	98	70.063	ENSORLG00015012025	lsg1	100	68.817	Oryzias_latipes_hsok
ENSAMXG00000008271	lsg1	98	70.032	ENSOMEG00000022379	lsg1	100	68.788	Oryzias_melastigma
ENSAMXG00000008271	lsg1	99	63.134	ENSOGAG00000003475	LSG1	99	61.968	Otolemur_garnettii
ENSAMXG00000008271	lsg1	100	63.554	ENSOARG00000020403	LSG1	100	62.946	Ovis_aries
ENSAMXG00000008271	lsg1	99	63.623	ENSPPAG00000029271	LSG1	99	63.158	Pan_paniscus
ENSAMXG00000008271	lsg1	100	63.111	ENSPPRG00000010281	LSG1	100	62.259	Panthera_pardus
ENSAMXG00000008271	lsg1	100	62.946	ENSPTIG00000010789	LSG1	100	62.090	Panthera_tigris_altaica
ENSAMXG00000008271	lsg1	99	63.473	ENSPTRG00000015760	LSG1	99	63.008	Pan_troglodytes
ENSAMXG00000008271	lsg1	99	63.389	ENSPANG00000018249	LSG1	99	62.239	Papio_anubis
ENSAMXG00000008271	lsg1	99	71.077	ENSPKIG00000002895	lsg1	99	70.795	Paramormyrops_kingsleyae
ENSAMXG00000008271	lsg1	96	62.481	ENSPSIG00000009821	LSG1	99	62.016	Pelodiscus_sinensis
ENSAMXG00000008271	lsg1	95	72.565	ENSPMGG00000000931	lsg1	100	70.161	Periophthalmus_magnuspinnatus
ENSAMXG00000008271	lsg1	99	63.487	ENSPEMG00000012082	-	99	63.253	Peromyscus_maniculatus_bairdii
ENSAMXG00000008271	lsg1	100	61.310	ENSPMAG00000007451	lsg1	100	60.266	Petromyzon_marinus
ENSAMXG00000008271	lsg1	98	66.848	ENSPCIG00000013890	LSG1	81	66.486	Phascolarctos_cinereus
ENSAMXG00000008271	lsg1	98	73.101	ENSPFOG00000021882	lsg1	99	72.798	Poecilia_formosa
ENSAMXG00000008271	lsg1	98	71.831	ENSPLAG00000019536	lsg1	99	72.334	Poecilia_latipinna
ENSAMXG00000008271	lsg1	98	71.924	ENSPMEG00000017281	lsg1	99	72.111	Poecilia_mexicana
ENSAMXG00000008271	lsg1	98	62.597	ENSPREG00000006048	lsg1	99	63.150	Poecilia_reticulata
ENSAMXG00000008271	lsg1	92	61.935	ENSPPYG00000014425	LSG1	100	61.129	Pongo_abelii
ENSAMXG00000008271	lsg1	89	72.000	ENSPCAG00000005511	LSG1	90	72.000	Procavia_capensis
ENSAMXG00000008271	lsg1	99	62.349	ENSPCOG00000012360	LSG1	99	62.349	Propithecus_coquereli
ENSAMXG00000008271	lsg1	100	73.171	ENSPNYG00000021994	lsg1	100	72.741	Pundamilia_nyererei
ENSAMXG00000008271	lsg1	100	81.902	ENSPNAG00000015533	lsg1	100	81.442	Pygocentrus_nattereri
ENSAMXG00000008271	lsg1	99	62.969	ENSRNOG00000001727	Lsg1	99	63.568	Rattus_norvegicus
ENSAMXG00000008271	lsg1	99	63.030	ENSRBIG00000029053	LSG1	99	63.079	Rhinopithecus_bieti
ENSAMXG00000008271	lsg1	99	63.030	ENSRROG00000037702	LSG1	99	63.079	Rhinopithecus_roxellana
ENSAMXG00000008271	lsg1	78	40.232	YGL099W	LSG1	67	47.556	Saccharomyces_cerevisiae
ENSAMXG00000008271	lsg1	99	63.293	ENSSBOG00000034938	LSG1	99	62.985	Saimiri_boliviensis_boliviensis
ENSAMXG00000008271	lsg1	78	62.141	ENSSHAG00000003487	LSG1	100	61.111	Sarcophilus_harrisii
ENSAMXG00000008271	lsg1	98	71.919	ENSSFOG00015008955	lsg1	100	71.298	Scleropages_formosus
ENSAMXG00000008271	lsg1	98	75.157	ENSSDUG00000004622	lsg1	100	74.189	Seriola_dumerili
ENSAMXG00000008271	lsg1	98	74.566	ENSSLDG00000010869	lsg1	100	72.936	Seriola_lalandi_dorsalis
ENSAMXG00000008271	lsg1	84	64.756	ENSSARG00000012981	LSG1	82	63.897	Sorex_araneus
ENSAMXG00000008271	lsg1	100	65.512	ENSSPUG00000016347	LSG1	100	65.250	Sphenodon_punctatus
ENSAMXG00000008271	lsg1	100	71.827	ENSSPAG00000005508	lsg1	100	73.261	Stegastes_partitus
ENSAMXG00000008271	lsg1	100	63.014	ENSSSCG00000011827	LSG1	100	62.406	Sus_scrofa
ENSAMXG00000008271	lsg1	89	59.967	ENSTGUG00000009068	LSG1	100	59.866	Taeniopygia_guttata
ENSAMXG00000008271	lsg1	98	68.819	ENSTRUG00000017380	lsg1	100	67.547	Takifugu_rubripes
ENSAMXG00000008271	lsg1	98	73.101	ENSTNIG00000015570	lsg1	100	72.840	Tetraodon_nigroviridis
ENSAMXG00000008271	lsg1	91	70.000	ENSTTRG00000000559	LSG1	91	70.000	Tursiops_truncatus
ENSAMXG00000008271	lsg1	100	62.048	ENSUAMG00000012454	LSG1	100	62.315	Ursus_americanus
ENSAMXG00000008271	lsg1	100	62.048	ENSUMAG00000000855	LSG1	100	62.315	Ursus_maritimus
ENSAMXG00000008271	lsg1	95	60.587	ENSVPAG00000012400	LSG1	100	59.752	Vicugna_pacos
ENSAMXG00000008271	lsg1	97	63.893	ENSVVUG00000008956	LSG1	98	63.385	Vulpes_vulpes
ENSAMXG00000008271	lsg1	100	66.565	ENSXETG00000003451	lsg1	100	66.770	Xenopus_tropicalis
ENSAMXG00000008271	lsg1	98	72.425	ENSXCOG00000003239	lsg1	99	72.248	Xiphophorus_couchianus
ENSAMXG00000008271	lsg1	98	70.183	ENSXMAG00000005536	lsg1	99	70.802	Xiphophorus_maculatus