EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000008282 (Gene tree)
Gene ID: 103043530
Gene Symbol: sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 3589 bases
Position: chr23:11343174-11346762
Accession: 103043530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000008515	RRM_1	PF00076.22	3.6e-39	1	2
ENSAMXP00000008515	RRM_1	PF00076.22	3.6e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000008515	-	1206	XM_007230795	ENSAMXP00000008515	401 (aa)	XP_007230857	W5KLQ3

Gene Model

Click here to download ENSAMXG00000008282's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000008282's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000008282	sf3b4	74	38.251	ENSAMXG00000008599	pabpc1b	57	38.251

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000008282	sf3b4	60	96.250	ENSG00000143368	SF3B4	98	96.791	Homo_sapiens
ENSAMXG00000008282	sf3b4	60	97.500	ENSAPOG00000017647	sf3b4	60	97.500	Acanthochromis_polyacanthus
ENSAMXG00000008282	sf3b4	60	96.250	ENSAMEG00000010073	SF3B4	57	96.250	Ailuropoda_melanoleuca
ENSAMXG00000008282	sf3b4	60	96.667	ENSAOCG00000019801	sf3b4	60	96.667	Amphiprion_ocellaris
ENSAMXG00000008282	sf3b4	60	96.667	ENSAPEG00000010365	sf3b4	60	96.667	Amphiprion_percula
ENSAMXG00000008282	sf3b4	60	97.500	ENSATEG00000012844	sf3b4	60	97.500	Anabas_testudineus
ENSAMXG00000008282	sf3b4	53	100.000	ENSACAG00000010019	SF3B4	55	98.690	Anolis_carolinensis
ENSAMXG00000008282	sf3b4	60	96.250	ENSANAG00000031025	SF3B4	57	96.250	Aotus_nancymaae
ENSAMXG00000008282	sf3b4	60	98.750	ENSACLG00000014260	sf3b4	60	98.750	Astatotilapia_calliptera
ENSAMXG00000008282	sf3b4	53	94.393	ENSBTAG00000012793	-	53	94.393	Bos_taurus
ENSAMXG00000008282	sf3b4	60	96.250	ENSBTAG00000012495	SF3B4	57	96.250	Bos_taurus
ENSAMXG00000008282	sf3b4	71	65.878	WBGene00004723	sap-49	55	81.690	Caenorhabditis_elegans
ENSAMXG00000008282	sf3b4	60	96.250	ENSCAFG00000011617	SF3B4	57	96.250	Canis_familiaris
ENSAMXG00000008282	sf3b4	60	96.250	ENSCAFG00020019775	SF3B4	57	96.250	Canis_lupus_dingo
ENSAMXG00000008282	sf3b4	60	96.250	ENSCHIG00000025663	-	57	96.250	Capra_hircus
ENSAMXG00000008282	sf3b4	60	96.250	ENSTSYG00000009295	SF3B4	57	96.250	Carlito_syrichta
ENSAMXG00000008282	sf3b4	60	96.250	ENSCPOG00000008267	SF3B4	57	96.250	Cavia_porcellus
ENSAMXG00000008282	sf3b4	60	95.417	ENSCCAG00000021751	-	54	95.417	Cebus_capucinus
ENSAMXG00000008282	sf3b4	60	96.250	ENSCATG00000033114	SF3B4	57	96.250	Cercocebus_atys
ENSAMXG00000008282	sf3b4	60	96.250	ENSCLAG00000015851	SF3B4	57	96.250	Chinchilla_lanigera
ENSAMXG00000008282	sf3b4	60	96.250	ENSCSAG00000018129	SF3B4	57	96.250	Chlorocebus_sabaeus
ENSAMXG00000008282	sf3b4	53	100.000	ENSCPBG00000008041	SF3B4	55	98.253	Chrysemys_picta_bellii
ENSAMXG00000008282	sf3b4	56	88.393	ENSCING00000002337	-	57	90.610	Ciona_intestinalis
ENSAMXG00000008282	sf3b4	52	91.429	ENSCSAVG00000007809	-	89	89.820	Ciona_savignyi
ENSAMXG00000008282	sf3b4	60	96.250	ENSCANG00000035579	SF3B4	57	96.250	Colobus_angolensis_palliatus
ENSAMXG00000008282	sf3b4	60	96.250	ENSCGRG00001003590	Sf3b4	57	96.250	Cricetulus_griseus_chok1gshd
ENSAMXG00000008282	sf3b4	60	96.250	ENSCGRG00000016914	Sf3b4	57	96.250	Cricetulus_griseus_crigri
ENSAMXG00000008282	sf3b4	66	94.677	ENSCVAG00000005536	sf3b4	59	95.633	Cyprinodon_variegatus
ENSAMXG00000008282	sf3b4	60	98.333	ENSDARG00000018574	sf3b4	68	97.407	Danio_rerio
ENSAMXG00000008282	sf3b4	97	64.500	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSAMXG00000008282	sf3b4	58	90.948	ENSDNOG00000048908	-	56	90.948	Dasypus_novemcinctus
ENSAMXG00000008282	sf3b4	60	96.250	ENSDORG00000016366	Sf3b4	57	96.250	Dipodomys_ordii
ENSAMXG00000008282	sf3b4	57	87.719	ENSETEG00000008963	SF3B4	54	87.391	Echinops_telfairi
ENSAMXG00000008282	sf3b4	60	96.250	ENSEASG00005001477	SF3B4	57	96.250	Equus_asinus_asinus
ENSAMXG00000008282	sf3b4	60	96.250	ENSECAG00000024737	SF3B4	57	96.250	Equus_caballus
ENSAMXG00000008282	sf3b4	87	88.952	ENSELUG00000012876	sf3b4	67	97.037	Esox_lucius
ENSAMXG00000008282	sf3b4	60	96.250	ENSFCAG00000010106	SF3B4	57	96.250	Felis_catus
ENSAMXG00000008282	sf3b4	60	96.250	ENSFDAG00000009286	SF3B4	57	96.250	Fukomys_damarensis
ENSAMXG00000008282	sf3b4	61	80.702	ENSGMOG00000002519	sf3b4	67	97.391	Gadus_morhua
ENSAMXG00000008282	sf3b4	53	100.000	ENSGALG00000013352	SF3B4	55	98.253	Gallus_gallus
ENSAMXG00000008282	sf3b4	66	95.437	ENSGAFG00000010181	sf3b4	61	97.083	Gambusia_affinis
ENSAMXG00000008282	sf3b4	56	99.115	ENSGACG00000003819	sf3b4	58	97.826	Gasterosteus_aculeatus
ENSAMXG00000008282	sf3b4	77	67.610	ENSGGOG00000038845	-	54	89.151	Gorilla_gorilla
ENSAMXG00000008282	sf3b4	60	96.250	ENSGGOG00000004761	SF3B4	57	96.250	Gorilla_gorilla
ENSAMXG00000008282	sf3b4	60	98.750	ENSHBUG00000002028	sf3b4	60	98.750	Haplochromis_burtoni
ENSAMXG00000008282	sf3b4	60	96.250	ENSHGLG00000012360	SF3B4	57	96.250	Heterocephalus_glaber_female
ENSAMXG00000008282	sf3b4	60	96.250	ENSHGLG00100008533	SF3B4	57	96.250	Heterocephalus_glaber_male
ENSAMXG00000008282	sf3b4	57	96.916	ENSHCOG00000003014	sf3b4	57	96.507	Hippocampus_comes
ENSAMXG00000008282	sf3b4	72	95.833	ENSIPUG00000012242	Sf3b4	72	95.819	Ictalurus_punctatus
ENSAMXG00000008282	sf3b4	60	96.250	ENSSTOG00000000684	-	57	96.250	Ictidomys_tridecemlineatus
ENSAMXG00000008282	sf3b4	59	70.748	ENSJJAG00000022500	Sf3b4	59	70.748	Jaculus_jaculus
ENSAMXG00000008282	sf3b4	95	83.420	ENSKMAG00000008154	sf3b4	62	98.354	Kryptolebias_marmoratus
ENSAMXG00000008282	sf3b4	58	96.996	ENSLBEG00000026818	sf3b4	58	98.261	Labrus_bergylta
ENSAMXG00000008282	sf3b4	60	94.583	ENSLACG00000004436	SF3B4	66	94.583	Latimeria_chalumnae
ENSAMXG00000008282	sf3b4	57	98.690	ENSLOCG00000009048	sf3b4	55	98.261	Lepisosteus_oculatus
ENSAMXG00000008282	sf3b4	77	79.321	ENSLAFG00000008531	SF3B4	56	96.250	Loxodonta_africana
ENSAMXG00000008282	sf3b4	60	96.250	ENSMFAG00000042395	SF3B4	57	96.250	Macaca_fascicularis
ENSAMXG00000008282	sf3b4	89	61.878	ENSMFAG00000039067	-	58	78.802	Macaca_fascicularis
ENSAMXG00000008282	sf3b4	60	96.250	ENSMMUG00000007256	SF3B4	57	96.250	Macaca_mulatta
ENSAMXG00000008282	sf3b4	60	96.250	ENSMNEG00000031839	SF3B4	57	96.250	Macaca_nemestrina
ENSAMXG00000008282	sf3b4	89	61.326	ENSMNEG00000031526	-	58	78.341	Macaca_nemestrina
ENSAMXG00000008282	sf3b4	60	96.250	ENSMLEG00000038667	SF3B4	57	96.250	Mandrillus_leucophaeus
ENSAMXG00000008282	sf3b4	73	94.845	ENSMAMG00000014692	sf3b4	71	95.035	Mastacembelus_armatus
ENSAMXG00000008282	sf3b4	60	98.750	ENSMZEG00005026741	sf3b4	60	98.750	Maylandia_zebra
ENSAMXG00000008282	sf3b4	53	100.000	ENSMGAG00000000653	SF3B4	55	98.253	Meleagris_gallopavo
ENSAMXG00000008282	sf3b4	60	96.250	ENSMAUG00000015266	Sf3b4	57	96.250	Mesocricetus_auratus
ENSAMXG00000008282	sf3b4	60	96.250	ENSMICG00000044961	SF3B4	57	96.250	Microcebus_murinus
ENSAMXG00000008282	sf3b4	92	74.607	ENSMOCG00000014155	-	57	93.939	Microtus_ochrogaster
ENSAMXG00000008282	sf3b4	60	96.250	ENSMOCG00000013658	-	57	96.250	Microtus_ochrogaster
ENSAMXG00000008282	sf3b4	57	97.826	ENSMMOG00000018032	sf3b4	59	97.826	Mola_mola
ENSAMXG00000008282	sf3b4	60	96.250	ENSMODG00000018767	SF3B4	57	96.250	Monodelphis_domestica
ENSAMXG00000008282	sf3b4	62	96.800	ENSMALG00000006174	sf3b4	60	97.119	Monopterus_albus
ENSAMXG00000008282	sf3b4	60	96.250	MGP_CAROLIEiJ_G0025365	Sf3b4	57	96.250	Mus_caroli
ENSAMXG00000008282	sf3b4	60	96.250	ENSMUSG00000068856	Sf3b4	57	96.250	Mus_musculus
ENSAMXG00000008282	sf3b4	60	96.250	MGP_PahariEiJ_G0026809	Sf3b4	57	96.250	Mus_pahari
ENSAMXG00000008282	sf3b4	60	96.250	MGP_SPRETEiJ_G0026309	Sf3b4	57	96.250	Mus_spretus
ENSAMXG00000008282	sf3b4	60	96.250	ENSMPUG00000005563	SF3B4	57	96.250	Mustela_putorius_furo
ENSAMXG00000008282	sf3b4	60	96.250	ENSMLUG00000010789	SF3B4	57	96.250	Myotis_lucifugus
ENSAMXG00000008282	sf3b4	77	80.878	ENSNGAG00000016337	Sf3b4	57	96.250	Nannospalax_galili
ENSAMXG00000008282	sf3b4	60	98.333	ENSNBRG00000013865	sf3b4	60	98.333	Neolamprologus_brichardi
ENSAMXG00000008282	sf3b4	99	63.747	ENSNLEG00000000537	-	58	87.826	Nomascus_leucogenys
ENSAMXG00000008282	sf3b4	57	93.421	ENSOPRG00000010808	SF3B4	54	93.043	Ochotona_princeps
ENSAMXG00000008282	sf3b4	76	67.913	ENSODEG00000003597	-	59	80.083	Octodon_degus
ENSAMXG00000008282	sf3b4	86	60.224	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSAMXG00000008282	sf3b4	66	96.578	ENSONIG00000002730	sf3b4	61	98.354	Oreochromis_niloticus
ENSAMXG00000008282	sf3b4	60	96.250	ENSOCUG00000004614	SF3B4	57	96.250	Oryctolagus_cuniculus
ENSAMXG00000008282	sf3b4	58	97.845	ENSORLG00000003062	sf3b4	59	98.696	Oryzias_latipes
ENSAMXG00000008282	sf3b4	58	97.845	ENSORLG00020000687	sf3b4	58	98.696	Oryzias_latipes_hni
ENSAMXG00000008282	sf3b4	58	97.845	ENSORLG00015010989	sf3b4	58	98.696	Oryzias_latipes_hsok
ENSAMXG00000008282	sf3b4	58	98.276	ENSOMEG00000013694	sf3b4	58	98.696	Oryzias_melastigma
ENSAMXG00000008282	sf3b4	60	96.250	ENSOGAG00000006265	SF3B4	57	96.250	Otolemur_garnettii
ENSAMXG00000008282	sf3b4	61	78.689	ENSOARG00000007368	-	55	80.973	Ovis_aries
ENSAMXG00000008282	sf3b4	60	96.250	ENSOARG00000020718	-	57	96.250	Ovis_aries
ENSAMXG00000008282	sf3b4	60	96.250	ENSPPAG00000040904	SF3B4	57	96.250	Pan_paniscus
ENSAMXG00000008282	sf3b4	78	75.862	ENSPPAG00000030024	-	59	86.250	Pan_paniscus
ENSAMXG00000008282	sf3b4	60	96.250	ENSPPRG00000007384	SF3B4	57	96.250	Panthera_pardus
ENSAMXG00000008282	sf3b4	60	96.250	ENSPTIG00000014530	SF3B4	57	96.250	Panthera_tigris_altaica
ENSAMXG00000008282	sf3b4	78	75.873	ENSPTRG00000049727	-	60	86.667	Pan_troglodytes
ENSAMXG00000008282	sf3b4	60	96.250	ENSPTRG00000001243	SF3B4	57	96.250	Pan_troglodytes
ENSAMXG00000008282	sf3b4	60	96.250	ENSPANG00000005126	SF3B4	57	96.250	Papio_anubis
ENSAMXG00000008282	sf3b4	70	96.809	ENSPKIG00000020669	sf3b4	75	96.809	Paramormyrops_kingsleyae
ENSAMXG00000008282	sf3b4	60	96.250	ENSPEMG00000017568	Sf3b4	57	96.250	Peromyscus_maniculatus_bairdii
ENSAMXG00000008282	sf3b4	53	95.305	ENSPMAG00000007842	-	50	95.305	Petromyzon_marinus
ENSAMXG00000008282	sf3b4	60	96.250	ENSPCIG00000008765	SF3B4	57	96.250	Phascolarctos_cinereus
ENSAMXG00000008282	sf3b4	66	96.198	ENSPFOG00000005754	sf3b4	62	97.531	Poecilia_formosa
ENSAMXG00000008282	sf3b4	66	96.198	ENSPLAG00000001401	sf3b4	67	97.531	Poecilia_latipinna
ENSAMXG00000008282	sf3b4	66	95.437	ENSPREG00000011076	sf3b4	60	96.708	Poecilia_reticulata
ENSAMXG00000008282	sf3b4	52	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSAMXG00000008282	sf3b4	60	96.250	ENSPCOG00000015399	SF3B4	57	96.250	Propithecus_coquereli
ENSAMXG00000008282	sf3b4	60	96.250	ENSPVAG00000014171	SF3B4	57	96.250	Pteropus_vampyrus
ENSAMXG00000008282	sf3b4	60	98.750	ENSPNYG00000012700	sf3b4	60	98.750	Pundamilia_nyererei
ENSAMXG00000008282	sf3b4	100	94.514	ENSPNAG00000000686	sf3b4	100	94.514	Pygocentrus_nattereri
ENSAMXG00000008282	sf3b4	60	96.250	ENSRNOG00000021181	Sf3b4	57	96.250	Rattus_norvegicus
ENSAMXG00000008282	sf3b4	60	96.250	ENSRBIG00000043392	SF3B4	57	96.250	Rhinopithecus_bieti
ENSAMXG00000008282	sf3b4	92	59.843	ENSRROG00000028213	-	56	73.874	Rhinopithecus_roxellana
ENSAMXG00000008282	sf3b4	60	96.250	ENSRROG00000029366	SF3B4	57	96.250	Rhinopithecus_roxellana
ENSAMXG00000008282	sf3b4	60	95.833	ENSSBOG00000012310	-	57	95.833	Saimiri_boliviensis_boliviensis
ENSAMXG00000008282	sf3b4	60	91.667	ENSSHAG00000004043	SF3B4	56	91.667	Sarcophilus_harrisii
ENSAMXG00000008282	sf3b4	70	96.454	ENSSFOG00015008864	sf3b4	69	96.454	Scleropages_formosus
ENSAMXG00000008282	sf3b4	75	90.000	ENSSMAG00000006837	sf3b4	60	97.083	Scophthalmus_maximus
ENSAMXG00000008282	sf3b4	73	94.502	ENSSDUG00000012064	sf3b4	70	94.681	Seriola_dumerili
ENSAMXG00000008282	sf3b4	73	93.814	ENSSLDG00000014226	sf3b4	70	93.972	Seriola_lalandi_dorsalis
ENSAMXG00000008282	sf3b4	73	94.845	ENSSPAG00000019219	sf3b4	70	95.035	Stegastes_partitus
ENSAMXG00000008282	sf3b4	99	51.117	ENSSSCG00000039440	-	56	63.478	Sus_scrofa
ENSAMXG00000008282	sf3b4	77	79.257	ENSSSCG00000006665	-	57	96.250	Sus_scrofa
ENSAMXG00000008282	sf3b4	60	94.628	ENSTGUG00000004470	SF3B4	91	97.826	Taeniopygia_guttata
ENSAMXG00000008282	sf3b4	80	84.735	ENSTRUG00000004516	sf3b4	58	97.391	Takifugu_rubripes
ENSAMXG00000008282	sf3b4	57	98.261	ENSTNIG00000009156	sf3b4	59	98.261	Tetraodon_nigroviridis
ENSAMXG00000008282	sf3b4	60	96.250	ENSTTRG00000005217	SF3B4	57	96.250	Tursiops_truncatus
ENSAMXG00000008282	sf3b4	60	96.250	ENSUAMG00000022468	SF3B4	57	96.250	Ursus_americanus
ENSAMXG00000008282	sf3b4	60	96.250	ENSUMAG00000003802	SF3B4	57	96.250	Ursus_maritimus
ENSAMXG00000008282	sf3b4	57	96.053	ENSVPAG00000008152	SF3B4	55	96.053	Vicugna_pacos
ENSAMXG00000008282	sf3b4	60	96.250	ENSVVUG00000007732	-	61	96.250	Vulpes_vulpes
ENSAMXG00000008282	sf3b4	55	95.475	ENSXETG00000011038	sf3b4	54	100.000	Xenopus_tropicalis
ENSAMXG00000008282	sf3b4	66	95.817	ENSXCOG00000019895	sf3b4	62	97.119	Xiphophorus_couchianus
ENSAMXG00000008282	sf3b4	66	95.817	ENSXMAG00000003772	sf3b4	62	97.119	Xiphophorus_maculatus