EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSAMXG00000008418 (Gene tree)
Gene ID
103028131
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Plus strand
Length
44011 bases
Position
chr1:24466316-24510326
Accession
103028131
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000008662tRNA_anti-codonPF01336.254.8e-1311
ENSAMXP00000028886tRNA_anti-codonPF01336.256.1e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000008662-1665-ENSAMXP00000008662554 (aa)-W5KM50
ENSAMXT00000030058-5600XM_022670536ENSAMXP00000028886603 (aa)XP_022526257UPI000BBD57BA
Gene Model
Click here to download ENSAMXG00000008418's gene model file
Pathways
Pathway IDPathway NameSource
amex03030DNA replicationKEGG
amex03420Nucleotide excision repairKEGG
amex03430Mismatch repairKEGG
amex03440Homologous recombinationKEGG
amex03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000008418's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000008418rpa19969.526ENSAPOG00000019409RPA18169.526Acanthochromis_polyacanthus
ENSAMXG00000008418rpa19977.167ENSAPOG00000011658rpa110077.460Acanthochromis_polyacanthus
ENSAMXG00000008418rpa19961.538ENSAMEG00000007706RPA19961.148Ailuropoda_melanoleuca
ENSAMXG00000008418rpa19962.010ENSACIG00000012881RPA19962.862Amphilophus_citrinellus
ENSAMXG00000008418rpa19969.097ENSACIG00000007277rpa19971.107Amphilophus_citrinellus
ENSAMXG00000008418rpa19977.833ENSAOCG00000023376rpa110077.321Amphiprion_ocellaris
ENSAMXG00000008418rpa19959.509ENSAOCG00000009003RPA110059.476Amphiprion_ocellaris
ENSAMXG00000008418rpa19977.667ENSAPEG00000008634rpa110077.184Amphiprion_percula
ENSAMXG00000008418rpa19970.721ENSAPEG00000019132RPA110058.584Amphiprion_percula
ENSAMXG00000008418rpa19977.699ENSATEG00000022024rpa110077.699Anabas_testudineus
ENSAMXG00000008418rpa19959.908ENSATEG00000006443RPA110060.215Anabas_testudineus
ENSAMXG00000008418rpa19853.412ENSAPLG00000012442RPA19857.855Anas_platyrhynchos
ENSAMXG00000008418rpa19957.192ENSACAG00000014490RPA19956.322Anolis_carolinensis
ENSAMXG00000008418rpa19964.388ENSANAG00000023456RPA19764.388Aotus_nancymaae
ENSAMXG00000008418rpa19961.815ENSACLG00000005223RPA19960.720Astatotilapia_calliptera
ENSAMXG00000008418rpa19779.242ENSACLG00000006640rpa19979.242Astatotilapia_calliptera
ENSAMXG00000008418rpa19961.912ENSBTAG00000009711RPA19961.626Bos_taurus
ENSAMXG00000008418rpa19030.057WBGene00017546rpa-17830.057Caenorhabditis_elegans
ENSAMXG00000008418rpa19961.688ENSCJAG00000001848RPA19961.789Callithrix_jacchus
ENSAMXG00000008418rpa19961.564ENSCAFG00000019249RPA19961.889Canis_familiaris
ENSAMXG00000008418rpa19961.564ENSCAFG00020009847RPA19961.889Canis_lupus_dingo
ENSAMXG00000008418rpa19961.851ENSCHIG00000026308RPA19961.951Capra_hircus
ENSAMXG00000008418rpa19962.013ENSTSYG00000003482-9961.463Carlito_syrichta
ENSAMXG00000008418rpa19961.364ENSCPOG00000000035RPA19960.813Cavia_porcellus
ENSAMXG00000008418rpa19952.019ENSCCAG00000010981RPA19952.265Cebus_capucinus
ENSAMXG00000008418rpa19961.301ENSCLAG00000005185-10060.650Chinchilla_lanigera
ENSAMXG00000008418rpa19957.818ENSCLAG00000015045-9957.166Chinchilla_lanigera
ENSAMXG00000008418rpa19953.312ENSCSAG00000013833RPA19952.751Chlorocebus_sabaeus
ENSAMXG00000008418rpa17868.360ENSCHOG00000009454-9968.129Choloepus_hoffmanni
ENSAMXG00000008418rpa19959.727ENSCHOG00000013540-9961.263Choloepus_hoffmanni
ENSAMXG00000008418rpa110062.215ENSCPBG00000020377RPA19963.158Chrysemys_picta_bellii
ENSAMXG00000008418rpa19943.160ENSCING00000023482-9942.928Ciona_intestinalis
ENSAMXG00000008418rpa19965.288ENSCANG00000030911RPA19765.288Colobus_angolensis_palliatus
ENSAMXG00000008418rpa19961.750ENSCGRG00001008197Rpa19961.750Cricetulus_griseus_chok1gshd
ENSAMXG00000008418rpa18167.108ENSCGRG00000000582Rpa18966.887Cricetulus_griseus_crigri
ENSAMXG00000008418rpa19973.510ENSCSEG00000013066rpa19972.351Cynoglossus_semilaevis
ENSAMXG00000008418rpa19955.981ENSCSEG00000012726RPA19956.027Cynoglossus_semilaevis
ENSAMXG00000008418rpa19371.429ENSCVAG00000013446-9269.091Cyprinodon_variegatus
ENSAMXG00000008418rpa19976.529ENSCVAG00000019431rpa110076.259Cyprinodon_variegatus
ENSAMXG00000008418rpa110085.240ENSDARG00000003938rpa110084.909Danio_rerio
ENSAMXG00000008418rpa19962.623ENSDNOG00000017218RPA19962.562Dasypus_novemcinctus
ENSAMXG00000008418rpa19962.378ENSDORG00000006199Rpa19962.378Dipodomys_ordii
ENSAMXG00000008418rpa19941.914FBgn0010173RpA-709841.803Drosophila_melanogaster
ENSAMXG00000008418rpa18368.041ENSETEG00000017608RPA18268.041Echinops_telfairi
ENSAMXG00000008418rpa19964.865ENSEASG00005009372RPA19964.247Equus_asinus_asinus
ENSAMXG00000008418rpa19962.215ENSECAG00000023886RPA19962.215Equus_caballus
ENSAMXG00000008418rpa17568.496ENSEEUG00000002186-6868.496Erinaceus_europaeus
ENSAMXG00000008418rpa19978.254ENSELUG00000021071rpa19977.924Esox_lucius
ENSAMXG00000008418rpa19165.286ENSELUG00000006136RPA19965.286Esox_lucius
ENSAMXG00000008418rpa19962.439ENSFCAG00000006306RPA19962.439Felis_catus
ENSAMXG00000008418rpa19962.602ENSFALG00000006575RPA19961.951Ficedula_albicollis
ENSAMXG00000008418rpa19961.726ENSFDAG00000007720RPA19961.401Fukomys_damarensis
ENSAMXG00000008418rpa19975.622ENSFHEG00000003580rpa19975.249Fundulus_heteroclitus
ENSAMXG00000008418rpa19977.034ENSGMOG00000010382rpa19677.034Gadus_morhua
ENSAMXG00000008418rpa19961.138ENSGALG00000003072RPA19960.848Gallus_gallus
ENSAMXG00000008418rpa19976.705ENSGAFG00000012916rpa19976.373Gambusia_affinis
ENSAMXG00000008418rpa19769.977ENSGAFG00000020953RPA19958.788Gambusia_affinis
ENSAMXG00000008418rpa110074.692ENSGACG00000010856rpa19975.333Gasterosteus_aculeatus
ENSAMXG00000008418rpa110061.889ENSGAGG00000013611RPA19961.726Gopherus_agassizii
ENSAMXG00000008418rpa19964.505ENSGGOG00000014186RPA19960.891Gorilla_gorilla
ENSAMXG00000008418rpa19979.466ENSHBUG00000017773rpa19979.299Haplochromis_burtoni
ENSAMXG00000008418rpa19959.011ENSHBUG00000009348RPA19959.011Haplochromis_burtoni
ENSAMXG00000008418rpa19960.813ENSHGLG00000008846RPA110060.749Heterocephalus_glaber_female
ENSAMXG00000008418rpa19960.813ENSHGLG00100017755-10060.749Heterocephalus_glaber_male
ENSAMXG00000008418rpa19957.818ENSHGLG00100000799-9957.166Heterocephalus_glaber_male
ENSAMXG00000008418rpa19953.028ENSHGLG00100002005-9952.053Heterocephalus_glaber_male
ENSAMXG00000008418rpa19970.772ENSHCOG00000001401rpa19970.443Hippocampus_comes
ENSAMXG00000008418rpa19948.649ENSHCOG00000000351RPA19945.888Hippocampus_comes
ENSAMXG00000008418rpa19988.468ENSIPUG00000004400rpa19988.138Ictalurus_punctatus
ENSAMXG00000008418rpa19558.699ENSSTOG00000022475RPA19560.105Ictidomys_tridecemlineatus
ENSAMXG00000008418rpa19961.290ENSJJAG00000000876Rpa19863.032Jaculus_jaculus
ENSAMXG00000008418rpa19973.235ENSKMAG00000005605rpa19973.399Kryptolebias_marmoratus
ENSAMXG00000008418rpa19961.375ENSKMAG00000000234RPA19961.221Kryptolebias_marmoratus
ENSAMXG00000008418rpa19977.917ENSLBEG00000021604rpa19976.412Labrus_bergylta
ENSAMXG00000008418rpa19969.300ENSLBEG00000002281RPA17969.300Labrus_bergylta
ENSAMXG00000008418rpa18264.208ENSLACG00000007210RPA19662.474Latimeria_chalumnae
ENSAMXG00000008418rpa110072.158ENSLOCG00000006397rpa110071.570Lepisosteus_oculatus
ENSAMXG00000008418rpa19960.772ENSLAFG00000015354RPA19960.386Loxodonta_africana
ENSAMXG00000008418rpa18260.870ENSMFAG00000036138-9960.000Macaca_fascicularis
ENSAMXG00000008418rpa19957.447ENSMMUG00000002442-9956.557Macaca_mulatta
ENSAMXG00000008418rpa19961.329ENSMMUG00000011604-9961.194Macaca_mulatta
ENSAMXG00000008418rpa19956.498ENSMNEG00000029837-9961.373Macaca_nemestrina
ENSAMXG00000008418rpa19960.976ENSMNEG00000031632-9960.261Macaca_nemestrina
ENSAMXG00000008418rpa19859.437ENSMLEG00000038768-9859.396Mandrillus_leucophaeus
ENSAMXG00000008418rpa19570.698ENSMAMG00000020097RPA19369.977Mastacembelus_armatus
ENSAMXG00000008418rpa19880.367ENSMAMG00000017993rpa110080.367Mastacembelus_armatus
ENSAMXG00000008418rpa19979.633ENSMZEG00005007551rpa19979.466Maylandia_zebra
ENSAMXG00000008418rpa19961.815ENSMZEG00005024731RPA19960.720Maylandia_zebra
ENSAMXG00000008418rpa19960.526ENSMGAG00000005315RPA19860.396Meleagris_gallopavo
ENSAMXG00000008418rpa19961.986ENSMAUG00000010474Rpa19863.559Mesocricetus_auratus
ENSAMXG00000008418rpa19961.928ENSMICG00000012867RPA19961.928Microcebus_murinus
ENSAMXG00000008418rpa19962.418ENSMOCG00000013019Rpa19962.418Microtus_ochrogaster
ENSAMXG00000008418rpa110074.221ENSMMOG00000014292rpa19975.773Mola_mola
ENSAMXG00000008418rpa19964.161ENSMMOG00000010868RPA19863.361Mola_mola
ENSAMXG00000008418rpa110062.338ENSMODG00000010549RPA19961.626Monodelphis_domestica
ENSAMXG00000008418rpa19968.468ENSMALG00000001208RPA18868.468Monopterus_albus
ENSAMXG00000008418rpa19978.333ENSMALG00000011453rpa19977.833Monopterus_albus
ENSAMXG00000008418rpa19962.927MGP_CAROLIEiJ_G0016734Rpa19963.089Mus_caroli
ENSAMXG00000008418rpa19961.997ENSMUSG00000000751Rpa19961.997Mus_musculus
ENSAMXG00000008418rpa19962.298MGP_PahariEiJ_G0017871Rpa19962.460Mus_pahari
ENSAMXG00000008418rpa19961.897MGP_SPRETEiJ_G0017577Rpa19961.897Mus_spretus
ENSAMXG00000008418rpa19961.951ENSMPUG00000013119RPA19960.912Mustela_putorius_furo
ENSAMXG00000008418rpa19960.647ENSMLUG00000006113RPA19961.364Myotis_lucifugus
ENSAMXG00000008418rpa19961.329ENSNGAG00000004522Rpa19462.692Nannospalax_galili
ENSAMXG00000008418rpa19878.966ENSNBRG00000020595rpa19978.966Neolamprologus_brichardi
ENSAMXG00000008418rpa19961.073ENSNBRG00000009672RPA19760.302Neolamprologus_brichardi
ENSAMXG00000008418rpa19962.927ENSNLEG00000017149RPA19962.052Nomascus_leucogenys
ENSAMXG00000008418rpa19952.991ENSMEUG00000006714RPA19854.484Notamacropus_eugenii
ENSAMXG00000008418rpa19960.100ENSODEG00000009038RPA19661.745Octodon_degus
ENSAMXG00000008418rpa19979.016ENSONIG00000013135rpa19978.852Oreochromis_niloticus
ENSAMXG00000008418rpa19863.455ENSOANG00000010880RPA19963.289Ornithorhynchus_anatinus
ENSAMXG00000008418rpa19959.752ENSOCUG00000001504RPA19959.225Oryctolagus_cuniculus
ENSAMXG00000008418rpa19976.756ENSORLG00000004856rpa19976.589Oryzias_latipes
ENSAMXG00000008418rpa19967.026ENSORLG00000003368RPA19958.548Oryzias_latipes
ENSAMXG00000008418rpa19966.379ENSORLG00020015284RPA18766.595Oryzias_latipes_hni
ENSAMXG00000008418rpa19976.923ENSORLG00020008980rpa19976.756Oryzias_latipes_hni
ENSAMXG00000008418rpa19976.923ENSORLG00015013982rpa19976.756Oryzias_latipes_hsok
ENSAMXG00000008418rpa17468.523ENSORLG00015005867-9865.972Oryzias_latipes_hsok
ENSAMXG00000008418rpa19959.657ENSORLG00015020383RPA19959.168Oryzias_latipes_hsok
ENSAMXG00000008418rpa19973.746ENSOMEG00000004704rpa19973.579Oryzias_melastigma
ENSAMXG00000008418rpa19858.627ENSOMEG00000011040RPA19959.266Oryzias_melastigma
ENSAMXG00000008418rpa17669.780ENSOGAG00000029379-9770.286Otolemur_garnettii
ENSAMXG00000008418rpa19961.951ENSOGAG00000005581-9961.951Otolemur_garnettii
ENSAMXG00000008418rpa19961.851ENSOARG00000014479RPA19961.951Ovis_aries
ENSAMXG00000008418rpa19962.439ENSPPAG00000039680RPA19961.564Pan_paniscus
ENSAMXG00000008418rpa19962.520ENSPPRG00000011807RPA19962.520Panthera_pardus
ENSAMXG00000008418rpa19962.276ENSPTIG00000007898RPA19962.276Panthera_tigris_altaica
ENSAMXG00000008418rpa19962.602ENSPTRG00000008539RPA19961.726Pan_troglodytes
ENSAMXG00000008418rpa19962.013ENSPANG00000024592RPA19961.301Papio_anubis
ENSAMXG00000008418rpa19975.413ENSPKIG00000008053rpa19975.413Paramormyrops_kingsleyae
ENSAMXG00000008418rpa19960.136ENSPSIG00000015617RPA19961.065Pelodiscus_sinensis
ENSAMXG00000008418rpa19979.785ENSPMGG00000011589rpa19879.785Periophthalmus_magnuspinnatus
ENSAMXG00000008418rpa19962.837ENSPMGG00000000543RPA19962.433Periophthalmus_magnuspinnatus
ENSAMXG00000008418rpa19962.255ENSPEMG00000021061Rpa19962.255Peromyscus_maniculatus_bairdii
ENSAMXG00000008418rpa19962.175ENSPCIG00000019049RPA19961.951Phascolarctos_cinereus
ENSAMXG00000008418rpa19977.205ENSPFOG00000003987rpa19976.744Poecilia_formosa
ENSAMXG00000008418rpa19170.803ENSPLAG00000008844-9757.767Poecilia_latipinna
ENSAMXG00000008418rpa19977.205ENSPLAG00000004984rpa19976.910Poecilia_latipinna
ENSAMXG00000008418rpa19977.371ENSPMEG00000020602rpa19976.910Poecilia_mexicana
ENSAMXG00000008418rpa19170.316ENSPMEG00000003627-9759.061Poecilia_mexicana
ENSAMXG00000008418rpa19770.880ENSPREG00000010119RPA18370.880Poecilia_reticulata
ENSAMXG00000008418rpa19468.651ENSPREG00000010174rpa19668.301Poecilia_reticulata
ENSAMXG00000008418rpa19961.438ENSPCOG00000001799RPA19961.438Propithecus_coquereli
ENSAMXG00000008418rpa19961.789ENSPVAG00000002149RPA19961.401Pteropus_vampyrus
ENSAMXG00000008418rpa19961.659ENSPNYG00000024165RPA19960.563Pundamilia_nyererei
ENSAMXG00000008418rpa19979.800ENSPNYG00000016316rpa19979.633Pundamilia_nyererei
ENSAMXG00000008418rpa19982.689ENSPNAG00000008599rpa19684.091Pygocentrus_nattereri
ENSAMXG00000008418rpa19966.505ENSRNOG00000003123Rpa19963.562Rattus_norvegicus
ENSAMXG00000008418rpa19962.500ENSRBIG00000036587RPA19961.463Rhinopithecus_bieti
ENSAMXG00000008418rpa19958.442ENSRROG00000043278RPA19957.236Rhinopithecus_roxellana
ENSAMXG00000008418rpa19932.577YAR007CRFA19932.367Saccharomyces_cerevisiae
ENSAMXG00000008418rpa19460.357ENSSBOG00000030233RPA19762.679Saimiri_boliviensis_boliviensis
ENSAMXG00000008418rpa19961.475ENSSHAG00000007969RPA19861.639Sarcophilus_harrisii
ENSAMXG00000008418rpa110081.291ENSSFOG00015005362rpa19280.132Scleropages_formosus
ENSAMXG00000008418rpa19770.946ENSSMAG00000019746RPA18570.946Scophthalmus_maximus
ENSAMXG00000008418rpa19971.991ENSSDUG00000016358RPA18370.787Seriola_dumerili
ENSAMXG00000008418rpa19981.183ENSSDUG00000011949rpa19979.000Seriola_dumerili
ENSAMXG00000008418rpa19981.183ENSSLDG00000011806rpa19979.000Seriola_lalandi_dorsalis
ENSAMXG00000008418rpa19771.528ENSSLDG00000020784RPA19270.337Seriola_lalandi_dorsalis
ENSAMXG00000008418rpa18769.697ENSSARG00000007506RPA18969.697Sorex_araneus
ENSAMXG00000008418rpa19959.348ENSSPUG00000007223RPA19860.781Sphenodon_punctatus
ENSAMXG00000008418rpa19977.167ENSSPAG00000009903rpa19976.833Stegastes_partitus
ENSAMXG00000008418rpa19964.448ENSSPAG00000011165RPA19863.682Stegastes_partitus
ENSAMXG00000008418rpa19965.288ENSSSCG00000017822RPA19863.406Sus_scrofa
ENSAMXG00000008418rpa19962.215ENSTGUG00000005775RPA19961.866Taeniopygia_guttata
ENSAMXG00000008418rpa19469.953ENSTRUG00000000405RPA17769.124Takifugu_rubripes
ENSAMXG00000008418rpa110073.702ENSTRUG00000003616rpa19974.333Takifugu_rubripes
ENSAMXG00000008418rpa19975.822ENSTNIG00000016199rpa19975.493Tetraodon_nigroviridis
ENSAMXG00000008418rpa17968.636ENSTBEG00000002709RPA17468.636Tupaia_belangeri
ENSAMXG00000008418rpa19961.201ENSTTRG00000001169RPA19960.976Tursiops_truncatus
ENSAMXG00000008418rpa18876.471ENSUAMG00000015676RPA19776.471Ursus_americanus
ENSAMXG00000008418rpa19964.505ENSUMAG00000009328RPA19961.889Ursus_maritimus
ENSAMXG00000008418rpa19961.020ENSVPAG00000009443RPA19960.626Vicugna_pacos
ENSAMXG00000008418rpa19961.463ENSVVUG00000021715RPA19961.726Vulpes_vulpes
ENSAMXG00000008418rpa19966.612ENSXETG00000013538rpa19966.722Xenopus_tropicalis
ENSAMXG00000008418rpa19376.292ENSXCOG00000010068rpa19475.936Xiphophorus_couchianus
ENSAMXG00000008418rpa19963.718ENSXCOG00000009899-9963.718Xiphophorus_couchianus
ENSAMXG00000008418rpa19976.539ENSXMAG00000004102rpa110076.827Xiphophorus_maculatus
ENSAMXG00000008418rpa19770.429ENSXMAG00000010333RPA18170.429Xiphophorus_maculatus

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