EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000008470 (Gene tree)
Gene ID: -
Gene Symbol: tsr1
Alias: fc52b09|wu:fc52b09|zgc:123319
Full Name: TSR1%2C 20S rRNA accumulation%2C homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 7287 bases
Position: chr1:25313428-25320714
Accession: ZDB-GENE-030131-3762
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000008702	AARP2CN	PF08142.12	1.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000008702	-	1416	-	ENSAMXP00000008702	471 (aa)	-	W5KM90

Gene Model

Click here to download ENSAMXG00000008470's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000008470's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000008470	tsr1	90	49.543	ENSG00000167721	TSR1	98	46.787	Homo_sapiens
ENSAMXG00000008470	tsr1	97	74.730	ENSAPOG00000020891	tsr1	50	77.069	Acanthochromis_polyacanthus
ENSAMXG00000008470	tsr1	89	74.762	ENSACIG00000007090	tsr1	51	74.762	Amphilophus_citrinellus
ENSAMXG00000008470	tsr1	89	76.832	ENSAOCG00000023284	tsr1	50	76.832	Amphiprion_ocellaris
ENSAMXG00000008470	tsr1	89	75.887	ENSATEG00000021961	tsr1	50	75.887	Anabas_testudineus
ENSAMXG00000008470	tsr1	81	49.616	ENSACAG00000000859	TSR1	60	49.871	Anolis_carolinensis
ENSAMXG00000008470	tsr1	91	50.000	ENSANAG00000031071	TSR1	50	50.843	Aotus_nancymaae
ENSAMXG00000008470	tsr1	90	75.059	ENSACLG00000007595	tsr1	50	75.418	Astatotilapia_calliptera
ENSAMXG00000008470	tsr1	91	49.195	ENSBTAG00000004225	TSR1	50	49.639	Bos_taurus
ENSAMXG00000008470	tsr1	91	49.078	ENSCJAG00000012456	TSR1	50	49.880	Callithrix_jacchus
ENSAMXG00000008470	tsr1	95	47.368	ENSCAFG00000019273	-	56	49.279	Canis_familiaris
ENSAMXG00000008470	tsr1	95	47.473	ENSCAFG00000002106	-	50	49.398	Canis_familiaris
ENSAMXG00000008470	tsr1	95	46.813	ENSCAFG00020009728	TSR1	97	44.216	Canis_lupus_dingo
ENSAMXG00000008470	tsr1	90	49.886	ENSCHIG00000023935	TSR1	50	50.120	Capra_hircus
ENSAMXG00000008470	tsr1	90	49.657	ENSTSYG00000005468	TSR1	50	50.120	Carlito_syrichta
ENSAMXG00000008470	tsr1	87	50.847	ENSCPOG00000014833	TSR1	54	50.363	Cavia_porcellus
ENSAMXG00000008470	tsr1	91	50.000	ENSCCAG00000028962	TSR1	53	50.843	Cebus_capucinus
ENSAMXG00000008470	tsr1	90	49.315	ENSCATG00000044262	TSR1	52	50.120	Cercocebus_atys
ENSAMXG00000008470	tsr1	90	48.630	ENSCLAG00000005567	TSR1	50	49.880	Chinchilla_lanigera
ENSAMXG00000008470	tsr1	90	49.087	ENSCSAG00000013788	TSR1	50	49.880	Chlorocebus_sabaeus
ENSAMXG00000008470	tsr1	93	38.512	ENSCING00000020658	-	52	39.007	Ciona_intestinalis
ENSAMXG00000008470	tsr1	89	35.845	ENSCSAVG00000001875	-	53	36.342	Ciona_savignyi
ENSAMXG00000008470	tsr1	90	49.658	ENSCANG00000033056	TSR1	55	50.602	Colobus_angolensis_palliatus
ENSAMXG00000008470	tsr1	87	48.068	ENSCGRG00001023942	Tsr1	50	47.826	Cricetulus_griseus_chok1gshd
ENSAMXG00000008470	tsr1	82	47.558	ENSCGRG00000013015	Tsr1	51	47.558	Cricetulus_griseus_crigri
ENSAMXG00000008470	tsr1	90	72.000	ENSCSEG00000013009	tsr1	50	72.143	Cynoglossus_semilaevis
ENSAMXG00000008470	tsr1	89	71.667	ENSCVAG00000000506	tsr1	50	71.667	Cyprinodon_variegatus
ENSAMXG00000008470	tsr1	90	78.824	ENSDARG00000007744	tsr1	93	76.877	Danio_rerio
ENSAMXG00000008470	tsr1	91	50.000	ENSDNOG00000004715	TSR1	50	50.242	Dasypus_novemcinctus
ENSAMXG00000008470	tsr1	92	42.955	ENSDORG00000023234	-	52	43.237	Dipodomys_ordii
ENSAMXG00000008470	tsr1	92	47.727	ENSDORG00000016371	-	50	48.068	Dipodomys_ordii
ENSAMXG00000008470	tsr1	88	53.461	ENSETEG00000017534	TSR1	50	53.140	Echinops_telfairi
ENSAMXG00000008470	tsr1	86	46.973	ENSEBUG00000013731	TSR1	50	46.787	Eptatretus_burgeri
ENSAMXG00000008470	tsr1	90	49.083	ENSECAG00000009114	TSR1	51	49.517	Equus_caballus
ENSAMXG00000008470	tsr1	90	49.074	ENSFCAG00000006313	TSR1	50	49.153	Felis_catus
ENSAMXG00000008470	tsr1	91	53.563	ENSFALG00000006532	TSR1	50	53.521	Ficedula_albicollis
ENSAMXG00000008470	tsr1	90	48.260	ENSFDAG00000006038	TSR1	50	48.068	Fukomys_damarensis
ENSAMXG00000008470	tsr1	89	72.143	ENSFHEG00000003626	tsr1	50	72.143	Fundulus_heteroclitus
ENSAMXG00000008470	tsr1	88	68.646	ENSGMOG00000010336	tsr1	51	68.646	Gadus_morhua
ENSAMXG00000008470	tsr1	89	72.619	ENSGAFG00000012993	tsr1	50	72.792	Gambusia_affinis
ENSAMXG00000008470	tsr1	90	72.028	ENSGACG00000010843	tsr1	52	72.406	Gasterosteus_aculeatus
ENSAMXG00000008470	tsr1	85	52.323	ENSGAGG00000025619	-	50	52.163	Gopherus_agassizii
ENSAMXG00000008470	tsr1	78	34.853	ENSGAGG00000000440	-	98	34.853	Gopherus_agassizii
ENSAMXG00000008470	tsr1	90	49.772	ENSGGOG00000001704	TSR1	50	50.602	Gorilla_gorilla
ENSAMXG00000008470	tsr1	90	75.294	ENSHBUG00000017904	tsr1	50	75.656	Haplochromis_burtoni
ENSAMXG00000008470	tsr1	90	42.290	ENSHGLG00000015688	-	50	42.784	Heterocephalus_glaber_female
ENSAMXG00000008470	tsr1	90	48.956	ENSHGLG00000012806	-	50	49.639	Heterocephalus_glaber_female
ENSAMXG00000008470	tsr1	90	48.956	ENSHGLG00100015392	TSR1	50	49.639	Heterocephalus_glaber_male
ENSAMXG00000008470	tsr1	90	72.642	ENSHCOG00000001432	tsr1	52	72.857	Hippocampus_comes
ENSAMXG00000008470	tsr1	89	79.433	ENSIPUG00000004618	tsr1	50	79.669	Ictalurus_punctatus
ENSAMXG00000008470	tsr1	90	49.306	ENSSTOG00000011819	TSR1	50	49.880	Ictidomys_tridecemlineatus
ENSAMXG00000008470	tsr1	89	73.810	ENSKMAG00000005763	tsr1	50	73.810	Kryptolebias_marmoratus
ENSAMXG00000008470	tsr1	89	74.524	ENSLBEG00000021823	tsr1	50	74.524	Labrus_bergylta
ENSAMXG00000008470	tsr1	90	54.756	ENSLACG00000002197	TSR1	50	53.917	Latimeria_chalumnae
ENSAMXG00000008470	tsr1	59	49.640	ENSLAFG00000022396	-	92	49.640	Loxodonta_africana
ENSAMXG00000008470	tsr1	90	49.315	ENSMFAG00000021330	TSR1	50	50.120	Macaca_fascicularis
ENSAMXG00000008470	tsr1	90	49.087	ENSMMUG00000017519	TSR1	50	49.880	Macaca_mulatta
ENSAMXG00000008470	tsr1	90	49.087	ENSMNEG00000031382	TSR1	51	49.758	Macaca_nemestrina
ENSAMXG00000008470	tsr1	90	49.087	ENSMLEG00000036733	TSR1	51	49.880	Mandrillus_leucophaeus
ENSAMXG00000008470	tsr1	91	75.291	ENSMAMG00000017918	tsr1	50	75.714	Mastacembelus_armatus
ENSAMXG00000008470	tsr1	90	74.473	ENSMZEG00005007477	tsr1	50	74.822	Maylandia_zebra
ENSAMXG00000008470	tsr1	89	50.704	ENSMGAG00000005576	TSR1	50	50.469	Meleagris_gallopavo
ENSAMXG00000008470	tsr1	90	50.345	ENSMICG00000012943	TSR1	50	50.847	Microcebus_murinus
ENSAMXG00000008470	tsr1	90	46.868	ENSMOCG00000022764	Tsr1	50	47.470	Microtus_ochrogaster
ENSAMXG00000008470	tsr1	90	74.413	ENSMMOG00000014280	tsr1	51	74.762	Mola_mola
ENSAMXG00000008470	tsr1	88	52.000	ENSMODG00000010658	TSR1	50	51.544	Monodelphis_domestica
ENSAMXG00000008470	tsr1	89	75.238	ENSMALG00000011681	tsr1	50	75.238	Monopterus_albus
ENSAMXG00000008470	tsr1	95	46.916	MGP_CAROLIEiJ_G0016727	Tsr1	50	48.551	Mus_caroli
ENSAMXG00000008470	tsr1	95	47.577	ENSMUSG00000038335	Tsr1	50	49.275	Mus_musculus
ENSAMXG00000008470	tsr1	90	49.535	MGP_PahariEiJ_G0017864	Tsr1	50	49.880	Mus_pahari
ENSAMXG00000008470	tsr1	95	47.577	MGP_SPRETEiJ_G0017570	Tsr1	50	49.275	Mus_spretus
ENSAMXG00000008470	tsr1	90	50.459	ENSMLUG00000003505	TSR1	50	50.725	Myotis_lucifugus
ENSAMXG00000008470	tsr1	82	44.961	ENSNGAG00000020455	-	96	44.961	Nannospalax_galili
ENSAMXG00000008470	tsr1	90	75.587	ENSNBRG00000020728	tsr1	50	75.952	Neolamprologus_brichardi
ENSAMXG00000008470	tsr1	82	50.129	ENSNLEG00000017184	TSR1	51	50.256	Nomascus_leucogenys
ENSAMXG00000008470	tsr1	87	49.286	ENSMEUG00000015828	TSR1	50	49.406	Notamacropus_eugenii
ENSAMXG00000008470	tsr1	89	75.236	ENSONIG00000013131	tsr1	51	75.236	Oreochromis_niloticus
ENSAMXG00000008470	tsr1	90	50.342	ENSOCUG00000014256	TSR1	50	51.079	Oryctolagus_cuniculus
ENSAMXG00000008470	tsr1	90	72.535	ENSORLG00000004926	tsr1	50	72.381	Oryzias_latipes
ENSAMXG00000008470	tsr1	90	72.535	ENSORLG00020008792	tsr1	50	72.381	Oryzias_latipes_hni
ENSAMXG00000008470	tsr1	90	72.535	ENSORLG00015013838	tsr1	50	72.381	Oryzias_latipes_hsok
ENSAMXG00000008470	tsr1	89	71.838	ENSOMEG00000004830	tsr1	50	71.838	Oryzias_melastigma
ENSAMXG00000008470	tsr1	87	51.069	ENSOGAG00000004492	TSR1	50	51.074	Otolemur_garnettii
ENSAMXG00000008470	tsr1	90	49.543	ENSPPAG00000036355	TSR1	50	50.361	Pan_paniscus
ENSAMXG00000008470	tsr1	90	48.843	ENSPPRG00000015519	-	50	48.910	Panthera_pardus
ENSAMXG00000008470	tsr1	90	48.843	ENSPTIG00000010608	TSR1	50	48.910	Panthera_tigris_altaica
ENSAMXG00000008470	tsr1	90	49.543	ENSPTRG00000008547	TSR1	52	50.361	Pan_troglodytes
ENSAMXG00000008470	tsr1	90	49.315	ENSPANG00000024463	TSR1	51	50.120	Papio_anubis
ENSAMXG00000008470	tsr1	95	67.382	ENSPKIG00000013972	tsr1	52	71.395	Paramormyrops_kingsleyae
ENSAMXG00000008470	tsr1	90	73.995	ENSPMGG00000011577	tsr1	51	74.224	Periophthalmus_magnuspinnatus
ENSAMXG00000008470	tsr1	90	46.744	ENSPEMG00000018033	Tsr1	50	46.618	Peromyscus_maniculatus_bairdii
ENSAMXG00000008470	tsr1	89	72.554	ENSPFOG00000004483	TSR1	51	72.554	Poecilia_formosa
ENSAMXG00000008470	tsr1	99	67.941	ENSPLAG00000022320	tsr1	53	72.792	Poecilia_latipinna
ENSAMXG00000008470	tsr1	89	72.792	ENSPMEG00000004577	tsr1	50	72.792	Poecilia_mexicana
ENSAMXG00000008470	tsr1	89	72.249	ENSPREG00000010354	tsr1	90	72.249	Poecilia_reticulata
ENSAMXG00000008470	tsr1	82	50.388	ENSPCAG00000012973	-	64	50.388	Procavia_capensis
ENSAMXG00000008470	tsr1	90	50.115	ENSPCOG00000017928	TSR1	99	45.355	Propithecus_coquereli
ENSAMXG00000008470	tsr1	90	50.348	ENSPVAG00000002162	TSR1	50	50.725	Pteropus_vampyrus
ENSAMXG00000008470	tsr1	90	75.529	ENSPNYG00000016163	tsr1	50	75.895	Pundamilia_nyererei
ENSAMXG00000008470	tsr1	89	86.085	ENSPNAG00000008659	tsr1	50	86.085	Pygocentrus_nattereri
ENSAMXG00000008470	tsr1	87	48.309	ENSRNOG00000002980	Tsr1	50	48.068	Rattus_norvegicus
ENSAMXG00000008470	tsr1	90	49.315	ENSRBIG00000040016	TSR1	50	50.120	Rhinopithecus_bieti
ENSAMXG00000008470	tsr1	90	49.315	ENSRROG00000030361	TSR1	53	50.120	Rhinopithecus_roxellana
ENSAMXG00000008470	tsr1	90	49.431	ENSSBOG00000020785	TSR1	50	50.239	Saimiri_boliviensis_boliviensis
ENSAMXG00000008470	tsr1	87	52.267	ENSSHAG00000011394	TSR1	51	52.267	Sarcophilus_harrisii
ENSAMXG00000008470	tsr1	94	71.041	ENSSFOG00015005455	tsr1	52	70.670	Scleropages_formosus
ENSAMXG00000008470	tsr1	89	74.584	ENSSMAG00000009504	tsr1	50	74.584	Scophthalmus_maximus
ENSAMXG00000008470	tsr1	90	76.832	ENSSDUG00000012074	tsr1	50	76.905	Seriola_dumerili
ENSAMXG00000008470	tsr1	90	76.832	ENSSLDG00000002031	tsr1	50	76.905	Seriola_lalandi_dorsalis
ENSAMXG00000008470	tsr1	90	48.492	ENSSARG00000000759	TSR1	50	48.792	Sorex_araneus
ENSAMXG00000008470	tsr1	87	53.333	ENSSPUG00000007042	TSR1	50	55.263	Sphenodon_punctatus
ENSAMXG00000008470	tsr1	89	75.952	ENSSPAG00000021951	tsr1	50	75.952	Stegastes_partitus
ENSAMXG00000008470	tsr1	92	48.864	ENSSSCG00000038534	TSR1	50	49.758	Sus_scrofa
ENSAMXG00000008470	tsr1	90	72.642	ENSTRUG00000004665	tsr1	97	71.988	Takifugu_rubripes
ENSAMXG00000008470	tsr1	87	74.696	ENSTNIG00000016196	tsr1	51	74.757	Tetraodon_nigroviridis
ENSAMXG00000008470	tsr1	92	49.548	ENSTTRG00000001177	TSR1	50	50.242	Tursiops_truncatus
ENSAMXG00000008470	tsr1	96	46.916	ENSUAMG00000025160	TSR1	59	48.792	Ursus_americanus
ENSAMXG00000008470	tsr1	92	49.774	ENSVPAG00000000228	TSR1	63	50.483	Vicugna_pacos
ENSAMXG00000008470	tsr1	95	47.033	ENSVVUG00000021767	TSR1	50	48.675	Vulpes_vulpes
ENSAMXG00000008470	tsr1	89	56.410	ENSXETG00000023797	tsr1	51	56.410	Xenopus_tropicalis
ENSAMXG00000008470	tsr1	89	72.554	ENSXCOG00000009635	tsr1	51	72.727	Xiphophorus_couchianus