EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000008485 (Gene tree)
Gene ID: 103022270
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 32274 bases
Position: chr23:11491207-11523480
Accession: 103022270
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000008765	CPSF_A	PF03178.15	2.1e-69	1	2
ENSAMXP00000008765	CPSF_A	PF03178.15	2.1e-69	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000008765	-	4062	XM_022683421	ENSAMXP00000008765	1353 (aa)	XP_022539142	W5KMF3

Gene Model

Click here to download ENSAMXG00000008485's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000008485's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000008485	cpsf1	100	73.964	ENSG00000071894	CPSF1	100	79.630	Homo_sapiens
ENSAMXG00000008485	cpsf1	100	78.798	ENSAPOG00000019621	cpsf1	100	79.203	Acanthochromis_polyacanthus
ENSAMXG00000008485	cpsf1	96	73.014	ENSAMEG00000005557	CPSF1	99	72.727	Ailuropoda_melanoleuca
ENSAMXG00000008485	cpsf1	100	78.933	ENSACIG00000006112	cpsf1	100	79.279	Amphilophus_citrinellus
ENSAMXG00000008485	cpsf1	100	79.724	ENSAOCG00000007120	cpsf1	100	79.793	Amphiprion_ocellaris
ENSAMXG00000008485	cpsf1	100	80.579	ENSAPEG00000005755	cpsf1	100	80.647	Amphiprion_percula
ENSAMXG00000008485	cpsf1	100	78.624	ENSATEG00000011097	cpsf1	100	79.164	Anabas_testudineus
ENSAMXG00000008485	cpsf1	92	69.014	ENSACAG00000009655	CPSF1	100	68.940	Anolis_carolinensis
ENSAMXG00000008485	cpsf1	100	74.015	ENSANAG00000036514	CPSF1	100	73.946	Aotus_nancymaae
ENSAMXG00000008485	cpsf1	100	78.422	ENSACLG00000012231	cpsf1	100	78.422	Astatotilapia_calliptera
ENSAMXG00000008485	cpsf1	100	72.252	ENSBTAG00000008355	CPSF1	100	72.434	Bos_taurus
ENSAMXG00000008485	cpsf1	100	30.867	WBGene00022301	cpsf-1	99	35.112	Caenorhabditis_elegans
ENSAMXG00000008485	cpsf1	100	74.015	ENSCJAG00000021421	CPSF1	100	73.946	Callithrix_jacchus
ENSAMXG00000008485	cpsf1	96	73.496	ENSCAFG00000001600	CPSF1	100	75.989	Canis_familiaris
ENSAMXG00000008485	cpsf1	100	73.292	ENSCAFG00020020821	CPSF1	100	74.120	Canis_lupus_dingo
ENSAMXG00000008485	cpsf1	100	69.854	ENSCHIG00000015833	CPSF1	100	69.577	Capra_hircus
ENSAMXG00000008485	cpsf1	100	74.361	ENSTSYG00000028560	CPSF1	100	80.093	Carlito_syrichta
ENSAMXG00000008485	cpsf1	96	73.116	ENSCAPG00000014921	CPSF1	99	73.295	Cavia_aperea
ENSAMXG00000008485	cpsf1	100	72.771	ENSCPOG00000011448	CPSF1	100	72.702	Cavia_porcellus
ENSAMXG00000008485	cpsf1	100	74.084	ENSCCAG00000037658	CPSF1	100	79.817	Cebus_capucinus
ENSAMXG00000008485	cpsf1	100	74.084	ENSCATG00000037234	CPSF1	100	79.630	Cercocebus_atys
ENSAMXG00000008485	cpsf1	100	73.029	ENSCLAG00000012166	CPSF1	100	73.859	Chinchilla_lanigera
ENSAMXG00000008485	cpsf1	100	74.084	ENSCSAG00000008502	CPSF1	100	74.015	Chlorocebus_sabaeus
ENSAMXG00000008485	cpsf1	99	75.593	ENSCPBG00000018910	CPSF1	96	75.523	Chrysemys_picta_bellii
ENSAMXG00000008485	cpsf1	95	45.704	ENSCING00000000514	-	100	45.526	Ciona_intestinalis
ENSAMXG00000008485	cpsf1	99	46.000	ENSCSAVG00000002293	-	98	50.704	Ciona_savignyi
ENSAMXG00000008485	cpsf1	98	70.934	ENSCANG00000032760	CPSF1	100	80.093	Colobus_angolensis_palliatus
ENSAMXG00000008485	cpsf1	100	73.997	ENSCGRG00001016344	Cpsf1	100	73.997	Cricetulus_griseus_chok1gshd
ENSAMXG00000008485	cpsf1	100	72.337	ENSCGRG00000003118	Cpsf1	100	72.337	Cricetulus_griseus_crigri
ENSAMXG00000008485	cpsf1	52	30.612	ENSCSEG00000012499	ddb1	54	30.612	Cynoglossus_semilaevis
ENSAMXG00000008485	cpsf1	100	78.422	ENSCSEG00000013464	cpsf1	100	78.631	Cynoglossus_semilaevis
ENSAMXG00000008485	cpsf1	52	30.464	ENSCVAG00000019531	ddb1	57	30.464	Cyprinodon_variegatus
ENSAMXG00000008485	cpsf1	83	78.697	ENSCVAG00000014059	cpsf1	100	76.852	Cyprinodon_variegatus
ENSAMXG00000008485	cpsf1	100	83.506	ENSDARG00000034178	cpsf1	100	83.713	Danio_rerio
ENSAMXG00000008485	cpsf1	54	82.609	ENSDNOG00000043654	CPSF1	94	82.609	Dasypus_novemcinctus
ENSAMXG00000008485	cpsf1	96	73.094	ENSDORG00000006278	Cpsf1	99	73.957	Dipodomys_ordii
ENSAMXG00000008485	cpsf1	100	41.026	FBgn0024698	Cpsf160	99	49.606	Drosophila_melanogaster
ENSAMXG00000008485	cpsf1	81	87.248	ENSETEG00000006022	CPSF1	83	87.248	Echinops_telfairi
ENSAMXG00000008485	cpsf1	100	74.258	ENSEASG00005010774	CPSF1	100	74.189	Equus_asinus_asinus
ENSAMXG00000008485	cpsf1	100	74.189	ENSECAG00000022209	CPSF1	100	74.120	Equus_caballus
ENSAMXG00000008485	cpsf1	100	72.897	ENSEEUG00000000471	CPSF1	100	72.897	Erinaceus_europaeus
ENSAMXG00000008485	cpsf1	100	79.434	ENSELUG00000012271	cpsf1	100	80.000	Esox_lucius
ENSAMXG00000008485	cpsf1	100	73.356	ENSFDAG00000016060	CPSF1	100	74.187	Fukomys_damarensis
ENSAMXG00000008485	cpsf1	100	77.793	ENSFHEG00000016801	cpsf1	100	77.863	Fundulus_heteroclitus
ENSAMXG00000008485	cpsf1	100	78.813	ENSGMOG00000000796	cpsf1	100	79.158	Gadus_morhua
ENSAMXG00000008485	cpsf1	52	30.464	ENSGAFG00000013142	ddb1	57	30.464	Gambusia_affinis
ENSAMXG00000008485	cpsf1	95	78.571	ENSGAFG00000018890	cpsf1	100	78.571	Gambusia_affinis
ENSAMXG00000008485	cpsf1	100	80.261	ENSGACG00000008703	cpsf1	100	80.358	Gasterosteus_aculeatus
ENSAMXG00000008485	cpsf1	100	73.451	ENSGAGG00000004276	CPSF1	100	73.380	Gopherus_agassizii
ENSAMXG00000008485	cpsf1	100	74.205	ENSGGOG00000016185	CPSF1	100	79.630	Gorilla_gorilla
ENSAMXG00000008485	cpsf1	100	80.976	ENSHBUG00000018900	cpsf1	100	80.976	Haplochromis_burtoni
ENSAMXG00000008485	cpsf1	100	73.928	ENSHGLG00000016139	CPSF1	100	73.859	Heterocephalus_glaber_female
ENSAMXG00000008485	cpsf1	100	73.859	ENSHGLG00100009750	CPSF1	100	73.790	Heterocephalus_glaber_male
ENSAMXG00000008485	cpsf1	100	76.970	ENSHCOG00000018509	cpsf1	100	77.242	Hippocampus_comes
ENSAMXG00000008485	cpsf1	100	82.955	ENSIPUG00000011259	cpsf1	100	83.024	Ictalurus_punctatus
ENSAMXG00000008485	cpsf1	96	73.891	ENSSTOG00000009957	CPSF1	99	73.891	Ictidomys_tridecemlineatus
ENSAMXG00000008485	cpsf1	100	73.389	ENSJJAG00000023002	Cpsf1	100	74.220	Jaculus_jaculus
ENSAMXG00000008485	cpsf1	90	76.803	ENSKMAG00000001940	cpsf1	99	76.803	Kryptolebias_marmoratus
ENSAMXG00000008485	cpsf1	52	30.464	ENSKMAG00000002315	ddb1	57	30.464	Kryptolebias_marmoratus
ENSAMXG00000008485	cpsf1	100	77.893	ENSLBEG00000003601	cpsf1	100	78.162	Labrus_bergylta
ENSAMXG00000008485	cpsf1	87	74.582	ENSLACG00000000233	CPSF1	100	61.480	Latimeria_chalumnae
ENSAMXG00000008485	cpsf1	100	76.669	ENSLOCG00000008484	cpsf1	100	77.220	Lepisosteus_oculatus
ENSAMXG00000008485	cpsf1	96	73.854	ENSLAFG00000022601	CPSF1	99	73.782	Loxodonta_africana
ENSAMXG00000008485	cpsf1	100	73.946	ENSMFAG00000037013	CPSF1	100	79.630	Macaca_fascicularis
ENSAMXG00000008485	cpsf1	100	74.876	ENSMMUG00000007380	CPSF1	100	79.630	Macaca_mulatta
ENSAMXG00000008485	cpsf1	96	74.319	ENSMNEG00000043564	CPSF1	100	79.630	Macaca_nemestrina
ENSAMXG00000008485	cpsf1	100	74.015	ENSMLEG00000043010	CPSF1	100	79.630	Mandrillus_leucophaeus
ENSAMXG00000008485	cpsf1	100	78.123	ENSMAMG00000003803	cpsf1	100	78.933	Mastacembelus_armatus
ENSAMXG00000008485	cpsf1	100	78.422	ENSMZEG00005001168	cpsf1	100	78.422	Maylandia_zebra
ENSAMXG00000008485	cpsf1	100	74.066	ENSMAUG00000003601	Cpsf1	100	74.066	Mesocricetus_auratus
ENSAMXG00000008485	cpsf1	100	74.136	ENSMICG00000015767	CPSF1	100	74.066	Microcebus_murinus
ENSAMXG00000008485	cpsf1	100	73.048	ENSMOCG00000022758	Cpsf1	100	73.946	Microtus_ochrogaster
ENSAMXG00000008485	cpsf1	100	80.627	ENSMMOG00000021245	cpsf1	100	80.836	Mola_mola
ENSAMXG00000008485	cpsf1	100	74.003	ENSMODG00000010755	CPSF1	100	73.934	Monodelphis_domestica
ENSAMXG00000008485	cpsf1	100	78.296	ENSMALG00000020545	cpsf1	100	78.702	Monopterus_albus
ENSAMXG00000008485	cpsf1	100	74.066	MGP_CAROLIEiJ_G0019936	Cpsf1	100	73.997	Mus_caroli
ENSAMXG00000008485	cpsf1	100	74.066	ENSMUSG00000034022	Cpsf1	100	73.997	Mus_musculus
ENSAMXG00000008485	cpsf1	100	73.997	MGP_PahariEiJ_G0019946	Cpsf1	100	73.997	Mus_pahari
ENSAMXG00000008485	cpsf1	100	73.167	MGP_SPRETEiJ_G0020839	Cpsf1	100	73.997	Mus_spretus
ENSAMXG00000008485	cpsf1	93	74.205	ENSMPUG00000006419	CPSF1	93	74.132	Mustela_putorius_furo
ENSAMXG00000008485	cpsf1	100	73.946	ENSNGAG00000022460	Cpsf1	100	73.877	Nannospalax_galili
ENSAMXG00000008485	cpsf1	100	75.852	ENSNBRG00000000813	cpsf1	100	75.852	Neolamprologus_brichardi
ENSAMXG00000008485	cpsf1	87	69.369	ENSNLEG00000010633	-	100	79.630	Nomascus_leucogenys
ENSAMXG00000008485	cpsf1	82	86.047	ENSMEUG00000014922	CPSF1	84	86.047	Notamacropus_eugenii
ENSAMXG00000008485	cpsf1	59	88.148	ENSOPRG00000004693	-	66	88.148	Ochotona_princeps
ENSAMXG00000008485	cpsf1	100	73.167	ENSODEG00000013995	CPSF1	100	73.997	Octodon_degus
ENSAMXG00000008485	cpsf1	100	80.761	ENSONIG00000007676	cpsf1	100	81.038	Oreochromis_niloticus
ENSAMXG00000008485	cpsf1	61	79.286	ENSOANG00000010716	CPSF1	88	79.286	Ornithorhynchus_anatinus
ENSAMXG00000008485	cpsf1	100	77.288	ENSORLG00000013544	cpsf1	100	77.627	Oryzias_latipes
ENSAMXG00000008485	cpsf1	100	77.356	ENSORLG00020021693	cpsf1	100	77.695	Oryzias_latipes_hni
ENSAMXG00000008485	cpsf1	100	77.356	ENSORLG00015009979	cpsf1	100	77.695	Oryzias_latipes_hsok
ENSAMXG00000008485	cpsf1	100	77.551	ENSOMEG00000011849	cpsf1	100	77.687	Oryzias_melastigma
ENSAMXG00000008485	cpsf1	100	74.223	ENSOGAG00000000315	CPSF1	100	74.153	Otolemur_garnettii
ENSAMXG00000008485	cpsf1	100	74.153	ENSPPAG00000019280	CPSF1	100	80.543	Pan_paniscus
ENSAMXG00000008485	cpsf1	100	74.153	ENSPTRG00000049288	-	100	80.543	Pan_troglodytes
ENSAMXG00000008485	cpsf1	100	72.894	ENSPTRG00000051253	-	100	80.543	Pan_troglodytes
ENSAMXG00000008485	cpsf1	96	74.319	ENSPANG00000015005	CPSF1	100	79.630	Papio_anubis
ENSAMXG00000008485	cpsf1	100	81.146	ENSPKIG00000002582	cpsf1	100	81.323	Paramormyrops_kingsleyae
ENSAMXG00000008485	cpsf1	100	73.934	ENSPCIG00000009035	CPSF1	100	73.865	Phascolarctos_cinereus
ENSAMXG00000008485	cpsf1	100	76.268	ENSPFOG00000012870	cpsf1	100	76.471	Poecilia_formosa
ENSAMXG00000008485	cpsf1	52	30.464	ENSPLAG00000017227	ddb1	56	30.464	Poecilia_latipinna
ENSAMXG00000008485	cpsf1	52	30.464	ENSPMEG00000011398	ddb1	56	30.464	Poecilia_mexicana
ENSAMXG00000008485	cpsf1	52	30.464	ENSPREG00000004440	ddb1	59	30.464	Poecilia_reticulata
ENSAMXG00000008485	cpsf1	100	76.171	ENSPREG00000016307	cpsf1	100	76.351	Poecilia_reticulata
ENSAMXG00000008485	cpsf1	100	67.104	ENSPPYG00000018973	CPSF1	100	67.035	Pongo_abelii
ENSAMXG00000008485	cpsf1	90	73.295	ENSPCAG00000011541	CPSF1	93	72.443	Procavia_capensis
ENSAMXG00000008485	cpsf1	100	70.727	ENSPCOG00000020001	CPSF1	100	79.167	Propithecus_coquereli
ENSAMXG00000008485	cpsf1	90	76.000	ENSPVAG00000006761	CPSF1	91	76.857	Pteropus_vampyrus
ENSAMXG00000008485	cpsf1	100	79.917	ENSPNYG00000004906	cpsf1	100	79.917	Pundamilia_nyererei
ENSAMXG00000008485	cpsf1	100	82.961	ENSPNAG00000024395	cpsf1	100	82.682	Pygocentrus_nattereri
ENSAMXG00000008485	cpsf1	100	74.771	ENSRNOG00000030705	Cpsf1	100	74.771	Rattus_norvegicus
ENSAMXG00000008485	cpsf1	100	74.876	ENSRBIG00000044907	CPSF1	100	80.093	Rhinopithecus_bieti
ENSAMXG00000008485	cpsf1	100	74.947	ENSRROG00000044861	CPSF1	100	80.093	Rhinopithecus_roxellana
ENSAMXG00000008485	cpsf1	96	74.175	ENSSBOG00000027177	CPSF1	99	74.103	Saimiri_boliviensis_boliviensis
ENSAMXG00000008485	cpsf1	100	73.728	ENSSHAG00000006500	CPSF1	100	73.659	Sarcophilus_harrisii
ENSAMXG00000008485	cpsf1	100	78.842	ENSSFOG00015004606	cpsf1	100	81.600	Scleropages_formosus
ENSAMXG00000008485	cpsf1	100	78.431	ENSSMAG00000020547	cpsf1	100	78.905	Scophthalmus_maximus
ENSAMXG00000008485	cpsf1	100	81.634	ENSSDUG00000001100	cpsf1	100	81.844	Seriola_dumerili
ENSAMXG00000008485	cpsf1	100	81.704	ENSSLDG00000003619	cpsf1	100	81.844	Seriola_lalandi_dorsalis
ENSAMXG00000008485	cpsf1	90	73.952	ENSSARG00000003643	CPSF1	90	73.624	Sorex_araneus
ENSAMXG00000008485	cpsf1	96	75.879	ENSSPUG00000014396	CPSF1	100	76.389	Sphenodon_punctatus
ENSAMXG00000008485	cpsf1	100	78.986	ENSSPAG00000005349	cpsf1	100	79.257	Stegastes_partitus
ENSAMXG00000008485	cpsf1	100	73.462	ENSSSCG00000005906	CPSF1	100	73.393	Sus_scrofa
ENSAMXG00000008485	cpsf1	96	77.343	ENSTRUG00000013134	cpsf1	99	77.343	Takifugu_rubripes
ENSAMXG00000008485	cpsf1	100	78.571	ENSTNIG00000014027	cpsf1	100	78.571	Tetraodon_nigroviridis
ENSAMXG00000008485	cpsf1	76	67.938	ENSTBEG00000001756	CPSF1	91	67.938	Tupaia_belangeri
ENSAMXG00000008485	cpsf1	86	80.000	ENSTTRG00000001937	CPSF1	84	80.000	Tursiops_truncatus
ENSAMXG00000008485	cpsf1	96	74.427	ENSUAMG00000006476	CPSF1	98	74.140	Ursus_americanus
ENSAMXG00000008485	cpsf1	100	78.025	ENSXCOG00000003608	cpsf1	100	78.234	Xiphophorus_couchianus
ENSAMXG00000008485	cpsf1	100	77.159	ENSXMAG00000005798	cpsf1	100	77.368	Xiphophorus_maculatus
ENSAMXG00000008485	cpsf1	52	30.464	ENSXMAG00000000022	ddb1	57	30.464	Xiphophorus_maculatus