EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000008540 (Gene tree)
Gene ID: 103030153
Gene Symbol: PRDM12 (1 of many)
Alias: PFM9
Full Name: PR domain zinc finger protein 12
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 18053 bases
Position: chrAPWO02000155.1:16345-34397
Accession: 103030153
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000008799	zf-C2H2	PF00096.26	7e-13	1	2
ENSAMXP00000008799	zf-C2H2	PF00096.26	7e-13	2	2
ENSAMXP00000030611	zf-C2H2	PF00096.26	7.2e-13	1	2
ENSAMXP00000030611	zf-C2H2	PF00096.26	7.2e-13	2	2
ENSAMXP00000008799	zf-met	PF12874.7	2.5e-06	1	1
ENSAMXP00000030611	zf-met	PF12874.7	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000050078	PRDM12 (1 of many)-201	5257	XM_007252084	ENSAMXP00000030611	399 (aa)	XP_007252146	UPI000BBDE4DA
ENSAMXT00000008799	PRDM12 (1 of many)-202	1050	-	ENSAMXP00000008799	349 (aa)	-	W5KMI7

Gene Model

Click here to download ENSAMXG00000008540's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000008540's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000008540	PRDM12	100	82.432	ENSAMXG00000033665	prdm12b	100	82.432
ENSAMXG00000008540	PRDM12	81	40.541	ENSAMXG00000000512	prdm14	74	40.541

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000008540	PRDM12	90	84.049	ENSG00000130711	PRDM12	99	77.869	Homo_sapiens
ENSAMXG00000008540	PRDM12	100	63.978	ENSAPOG00000018234	-	100	64.247	Acanthochromis_polyacanthus
ENSAMXG00000008540	PRDM12	100	81.095	ENSAPOG00000016051	prdm12b	100	81.095	Acanthochromis_polyacanthus
ENSAMXG00000008540	PRDM12	89	83.699	ENSAMEG00000016234	PRDM12	99	83.699	Ailuropoda_melanoleuca
ENSAMXG00000008540	PRDM12	100	79.950	ENSACIG00000019578	prdm12b	100	80.637	Amphilophus_citrinellus
ENSAMXG00000008540	PRDM12	100	76.808	ENSACIG00000005193	-	100	76.963	Amphilophus_citrinellus
ENSAMXG00000008540	PRDM12	100	80.637	ENSAOCG00000015040	prdm12b	100	80.902	Amphiprion_ocellaris
ENSAMXG00000008540	PRDM12	100	81.283	ENSAPEG00000015092	prdm12b	100	81.551	Amphiprion_percula
ENSAMXG00000008540	PRDM12	100	73.995	ENSAPEG00000022849	-	99	75.871	Amphiprion_percula
ENSAMXG00000008540	PRDM12	100	77.887	ENSATEG00000014595	-	96	85.015	Anabas_testudineus
ENSAMXG00000008540	PRDM12	93	82.006	ENSANAG00000020616	PRDM12	99	82.006	Aotus_nancymaae
ENSAMXG00000008540	PRDM12	100	84.831	ENSACLG00000011876	prdm12b	100	84.831	Astatotilapia_calliptera
ENSAMXG00000008540	PRDM12	100	73.350	ENSACLG00000007631	-	100	75.127	Astatotilapia_calliptera
ENSAMXG00000008540	PRDM12	90	84.356	ENSBTAG00000023797	PRDM12	99	78.889	Bos_taurus
ENSAMXG00000008540	PRDM12	90	84.049	ENSCJAG00000020540	PRDM12	99	78.729	Callithrix_jacchus
ENSAMXG00000008540	PRDM12	78	84.859	ENSCAFG00000023076	PRDM12	99	78.505	Canis_familiaris
ENSAMXG00000008540	PRDM12	90	84.356	ENSCAFG00020024046	PRDM12	99	78.788	Canis_lupus_dingo
ENSAMXG00000008540	PRDM12	90	84.356	ENSCHIG00000025005	PRDM12	99	79.006	Capra_hircus
ENSAMXG00000008540	PRDM12	93	79.167	ENSCPOG00000005901	PRDM12	99	79.167	Cavia_porcellus
ENSAMXG00000008540	PRDM12	90	84.049	ENSCCAG00000037485	PRDM12	99	78.729	Cebus_capucinus
ENSAMXG00000008540	PRDM12	90	84.049	ENSCATG00000020327	PRDM12	99	78.729	Cercocebus_atys
ENSAMXG00000008540	PRDM12	90	83.436	ENSCLAG00000005499	PRDM12	89	83.436	Chinchilla_lanigera
ENSAMXG00000008540	PRDM12	90	84.049	ENSCSAG00000014756	PRDM12	99	78.512	Chlorocebus_sabaeus
ENSAMXG00000008540	PRDM12	100	80.833	ENSCPBG00000022628	PRDM12	99	80.833	Chrysemys_picta_bellii
ENSAMXG00000008540	PRDM12	90	84.356	ENSCGRG00001015005	Prdm12	99	78.356	Cricetulus_griseus_chok1gshd
ENSAMXG00000008540	PRDM12	100	80.863	ENSCVAG00000017166	prdm12b	100	81.016	Cyprinodon_variegatus
ENSAMXG00000008540	PRDM12	100	75.182	ENSCVAG00000000944	-	100	76.413	Cyprinodon_variegatus
ENSAMXG00000008540	PRDM12	100	84.011	ENSDARG00000007430	prdm12b	100	84.011	Danio_rerio
ENSAMXG00000008540	PRDM12	90	83.792	ENSDNOG00000042302	PRDM12	99	78.512	Dasypus_novemcinctus
ENSAMXG00000008540	PRDM12	97	61.702	ENSEBUG00000016780	prdm12b	84	63.032	Eptatretus_burgeri
ENSAMXG00000008540	PRDM12	93	83.284	ENSEASG00005008472	PRDM12	99	78.261	Equus_asinus_asinus
ENSAMXG00000008540	PRDM12	93	83.284	ENSECAG00000005933	PRDM12	99	78.261	Equus_caballus
ENSAMXG00000008540	PRDM12	100	82.153	ENSELUG00000013674	PRDM12	99	82.153	Esox_lucius
ENSAMXG00000008540	PRDM12	100	81.769	ENSELUG00000009905	prdm12b	100	81.769	Esox_lucius
ENSAMXG00000008540	PRDM12	90	84.356	ENSFCAG00000043086	PRDM12	99	79.006	Felis_catus
ENSAMXG00000008540	PRDM12	100	81.564	ENSFALG00000001445	PRDM12	89	81.564	Ficedula_albicollis
ENSAMXG00000008540	PRDM12	100	76.425	ENSFHEG00000007746	-	100	76.684	Fundulus_heteroclitus
ENSAMXG00000008540	PRDM12	100	80.214	ENSFHEG00000003944	prdm12b	100	80.319	Fundulus_heteroclitus
ENSAMXG00000008540	PRDM12	90	87.385	ENSGMOG00000011797	prdm12b	96	85.588	Gadus_morhua
ENSAMXG00000008540	PRDM12	100	81.564	ENSGALG00000003895	PRDM12	99	81.564	Gallus_gallus
ENSAMXG00000008540	PRDM12	100	80.214	ENSGAFG00000010827	prdm12b	99	81.016	Gambusia_affinis
ENSAMXG00000008540	PRDM12	100	80.863	ENSGACG00000016713	prdm12b	99	80.863	Gasterosteus_aculeatus
ENSAMXG00000008540	PRDM12	100	80.833	ENSGAGG00000014083	PRDM12	99	80.833	Gopherus_agassizii
ENSAMXG00000008540	PRDM12	90	83.742	ENSGGOG00000010568	PRDM12	99	77.808	Gorilla_gorilla
ENSAMXG00000008540	PRDM12	100	80.533	ENSHBUG00000022878	prdm12b	100	80.533	Haplochromis_burtoni
ENSAMXG00000008540	PRDM12	100	73.350	ENSHBUG00000022537	-	93	75.127	Haplochromis_burtoni
ENSAMXG00000008540	PRDM12	90	83.129	ENSHGLG00000013939	PRDM12	99	76.923	Heterocephalus_glaber_female
ENSAMXG00000008540	PRDM12	90	81.579	ENSHCOG00000003663	prdm12b	100	75.888	Hippocampus_comes
ENSAMXG00000008540	PRDM12	100	75.556	ENSHCOG00000021167	-	100	75.556	Hippocampus_comes
ENSAMXG00000008540	PRDM12	100	81.044	ENSIPUG00000019544	PRDM12	100	81.044	Ictalurus_punctatus
ENSAMXG00000008540	PRDM12	100	82.880	ENSIPUG00000017053	prdm12b	100	82.880	Ictalurus_punctatus
ENSAMXG00000008540	PRDM12	94	82.301	ENSSTOG00000005986	PRDM12	89	82.301	Ictidomys_tridecemlineatus
ENSAMXG00000008540	PRDM12	90	84.049	ENSJJAG00000005424	Prdm12	99	84.049	Jaculus_jaculus
ENSAMXG00000008540	PRDM12	99	78.947	ENSKMAG00000021205	-	99	78.947	Kryptolebias_marmoratus
ENSAMXG00000008540	PRDM12	100	74.408	ENSKMAG00000016921	prdm12b	100	75.059	Kryptolebias_marmoratus
ENSAMXG00000008540	PRDM12	100	79.894	ENSLBEG00000017769	prdm12b	100	80.688	Labrus_bergylta
ENSAMXG00000008540	PRDM12	100	77.372	ENSLBEG00000007776	-	100	78.068	Labrus_bergylta
ENSAMXG00000008540	PRDM12	100	82.500	ENSLACG00000017560	PRDM12	99	82.500	Latimeria_chalumnae
ENSAMXG00000008540	PRDM12	100	82.645	ENSLOCG00000005429	prdm12b	99	83.880	Lepisosteus_oculatus
ENSAMXG00000008540	PRDM12	90	82.831	ENSLAFG00000006979	PRDM12	95	79.379	Loxodonta_africana
ENSAMXG00000008540	PRDM12	90	84.049	ENSMFAG00000040322	PRDM12	99	77.596	Macaca_fascicularis
ENSAMXG00000008540	PRDM12	90	84.049	ENSMNEG00000037234	PRDM12	99	78.729	Macaca_nemestrina
ENSAMXG00000008540	PRDM12	100	76.425	ENSMAMG00000018988	-	100	78.442	Mastacembelus_armatus
ENSAMXG00000008540	PRDM12	100	80.214	ENSMAMG00000013212	prdm12b	100	82.133	Mastacembelus_armatus
ENSAMXG00000008540	PRDM12	100	72.980	ENSMZEG00005000415	PRDM12	100	74.747	Maylandia_zebra
ENSAMXG00000008540	PRDM12	100	80.726	ENSMGAG00000005438	PRDM12	99	80.726	Meleagris_gallopavo
ENSAMXG00000008540	PRDM12	100	78.571	ENSMAUG00000013040	Prdm12	99	78.571	Mesocricetus_auratus
ENSAMXG00000008540	PRDM12	93	82.493	ENSMICG00000015480	PRDM12	99	78.670	Microcebus_murinus
ENSAMXG00000008540	PRDM12	99	79.167	ENSMOCG00000021026	Prdm12	93	82.596	Microtus_ochrogaster
ENSAMXG00000008540	PRDM12	100	80.939	ENSMODG00000012108	PRDM12	99	80.939	Monodelphis_domestica
ENSAMXG00000008540	PRDM12	100	70.000	ENSMALG00000021901	prdm12b	96	80.061	Monopterus_albus
ENSAMXG00000008540	PRDM12	90	84.356	MGP_CAROLIEiJ_G0023414	Prdm12	99	78.571	Mus_caroli
ENSAMXG00000008540	PRDM12	90	84.356	ENSMUSG00000079466	Prdm12	99	78.571	Mus_musculus
ENSAMXG00000008540	PRDM12	90	84.356	MGP_PahariEiJ_G0024871	Prdm12	99	78.571	Mus_pahari
ENSAMXG00000008540	PRDM12	90	84.356	MGP_SPRETEiJ_G0024331	Prdm12	99	78.571	Mus_spretus
ENSAMXG00000008540	PRDM12	90	84.356	ENSNGAG00000018480	Prdm12	99	79.167	Nannospalax_galili
ENSAMXG00000008540	PRDM12	100	73.315	ENSNBRG00000024312	-	100	74.124	Neolamprologus_brichardi
ENSAMXG00000008540	PRDM12	100	79.467	ENSNBRG00000006727	prdm12b	100	79.894	Neolamprologus_brichardi
ENSAMXG00000008540	PRDM12	100	72.652	ENSMEUG00000003828	PRDM12	99	72.652	Notamacropus_eugenii
ENSAMXG00000008540	PRDM12	90	83.742	ENSOPRG00000008680	PRDM12	99	83.742	Ochotona_princeps
ENSAMXG00000008540	PRDM12	93	82.196	ENSODEG00000016282	PRDM12	63	82.196	Octodon_degus
ENSAMXG00000008540	PRDM12	62	78.125	ENSOANG00000001043	PRDM12	100	78.125	Ornithorhynchus_anatinus
ENSAMXG00000008540	PRDM12	84	82.178	ENSOCUG00000008241	PRDM12	97	82.178	Oryctolagus_cuniculus
ENSAMXG00000008540	PRDM12	100	78.740	ENSORLG00000007114	prdm12b	99	78.740	Oryzias_latipes
ENSAMXG00000008540	PRDM12	100	75.481	ENSORLG00000017558	-	100	76.154	Oryzias_latipes
ENSAMXG00000008540	PRDM12	100	75.481	ENSORLG00020013167	-	100	75.962	Oryzias_latipes_hni
ENSAMXG00000008540	PRDM12	100	77.368	ENSORLG00020019565	prdm12b	99	78.068	Oryzias_latipes_hni
ENSAMXG00000008540	PRDM12	100	75.240	ENSORLG00015003435	-	100	76.154	Oryzias_latipes_hsok
ENSAMXG00000008540	PRDM12	100	77.513	ENSORLG00015007621	prdm12b	99	78.740	Oryzias_latipes_hsok
ENSAMXG00000008540	PRDM12	100	76.963	ENSOMEG00000004134	prdm12b	99	78.646	Oryzias_melastigma
ENSAMXG00000008540	PRDM12	100	77.970	ENSOMEG00000007762	-	100	76.296	Oryzias_melastigma
ENSAMXG00000008540	PRDM12	90	84.356	ENSOGAG00000007557	PRDM12	98	84.356	Otolemur_garnettii
ENSAMXG00000008540	PRDM12	79	81.818	ENSPPAG00000031506	-	97	81.818	Pan_paniscus
ENSAMXG00000008540	PRDM12	97	72.626	ENSPPRG00000023024	PRDM12	92	72.626	Panthera_pardus
ENSAMXG00000008540	PRDM12	90	84.049	ENSPTRG00000043324	-	99	78.082	Pan_troglodytes
ENSAMXG00000008540	PRDM12	90	84.049	ENSPTRG00000021475	PRDM12	99	78.082	Pan_troglodytes
ENSAMXG00000008540	PRDM12	90	84.049	ENSPANG00000025967	PRDM12	99	78.729	Papio_anubis
ENSAMXG00000008540	PRDM12	100	80.585	ENSPKIG00000007228	prdm12b	100	81.867	Paramormyrops_kingsleyae
ENSAMXG00000008540	PRDM12	90	81.098	ENSPKIG00000004305	PRDM12	94	81.098	Paramormyrops_kingsleyae
ENSAMXG00000008540	PRDM12	100	80.556	ENSPSIG00000006739	PRDM12	99	80.556	Pelodiscus_sinensis
ENSAMXG00000008540	PRDM12	100	80.381	ENSPMGG00000008867	prdm12b	99	81.793	Periophthalmus_magnuspinnatus
ENSAMXG00000008540	PRDM12	92	85.498	ENSPMGG00000002356	-	100	76.166	Periophthalmus_magnuspinnatus
ENSAMXG00000008540	PRDM12	91	83.636	ENSPEMG00000009969	Prdm12	90	84.356	Peromyscus_maniculatus_bairdii
ENSAMXG00000008540	PRDM12	100	80.939	ENSPCIG00000024119	PRDM12	99	80.939	Phascolarctos_cinereus
ENSAMXG00000008540	PRDM12	100	81.769	ENSPFOG00000019841	prdm12b	100	81.769	Poecilia_formosa
ENSAMXG00000008540	PRDM12	100	80.637	ENSPLAG00000016626	prdm12b	99	80.902	Poecilia_latipinna
ENSAMXG00000008540	PRDM12	97	79.076	ENSPMEG00000016698	prdm12b	100	80.163	Poecilia_mexicana
ENSAMXG00000008540	PRDM12	97	77.077	ENSPREG00000003211	-	96	77.077	Poecilia_reticulata
ENSAMXG00000008540	PRDM12	100	79.894	ENSPREG00000015073	prdm12b	99	80.475	Poecilia_reticulata
ENSAMXG00000008540	PRDM12	90	84.049	ENSPPYG00000019694	PRDM12	93	84.049	Pongo_abelii
ENSAMXG00000008540	PRDM12	90	84.356	ENSPCOG00000022255	PRDM12	99	78.082	Propithecus_coquereli
ENSAMXG00000008540	PRDM12	90	84.356	ENSPVAG00000001511	PRDM12	99	78.082	Pteropus_vampyrus
ENSAMXG00000008540	PRDM12	100	72.980	ENSPNYG00000013589	-	100	74.747	Pundamilia_nyererei
ENSAMXG00000008540	PRDM12	100	79.841	ENSPNYG00000009607	prdm12b	100	79.841	Pundamilia_nyererei
ENSAMXG00000008540	PRDM12	100	87.845	ENSPNAG00000013396	PRDM12	100	88.122	Pygocentrus_nattereri
ENSAMXG00000008540	PRDM12	100	82.609	ENSPNAG00000024532	prdm12b	100	82.609	Pygocentrus_nattereri
ENSAMXG00000008540	PRDM12	90	84.356	ENSRNOG00000009218	Prdm12	99	78.571	Rattus_norvegicus
ENSAMXG00000008540	PRDM12	87	83.861	ENSRBIG00000042712	PRDM12	98	77.401	Rhinopithecus_bieti
ENSAMXG00000008540	PRDM12	89	84.062	ENSRROG00000043554	PRDM12	99	84.062	Rhinopithecus_roxellana
ENSAMXG00000008540	PRDM12	100	80.441	ENSSHAG00000015972	PRDM12	99	80.441	Sarcophilus_harrisii
ENSAMXG00000008540	PRDM12	100	77.037	ENSSMAG00000003754	prdm12b	100	79.012	Scophthalmus_maximus
ENSAMXG00000008540	PRDM12	100	77.165	ENSSDUG00000019071	-	95	84.179	Seriola_dumerili
ENSAMXG00000008540	PRDM12	100	81.095	ENSSDUG00000023498	prdm12b	100	81.095	Seriola_dumerili
ENSAMXG00000008540	PRDM12	100	81.343	ENSSLDG00000009557	prdm12b	100	81.095	Seriola_lalandi_dorsalis
ENSAMXG00000008540	PRDM12	100	80.609	ENSSLDG00000013562	-	100	80.886	Seriola_lalandi_dorsalis
ENSAMXG00000008540	PRDM12	100	81.111	ENSSPUG00000013424	PRDM12	99	81.111	Sphenodon_punctatus
ENSAMXG00000008540	PRDM12	100	72.554	ENSSPAG00000022420	-	100	73.171	Stegastes_partitus
ENSAMXG00000008540	PRDM12	100	80.159	ENSSPAG00000018824	prdm12b	100	80.159	Stegastes_partitus
ENSAMXG00000008540	PRDM12	90	84.356	ENSSSCG00000005703	PRDM12	99	78.788	Sus_scrofa
ENSAMXG00000008540	PRDM12	100	80.978	ENSTRUG00000018659	prdm12b	100	82.385	Takifugu_rubripes
ENSAMXG00000008540	PRDM12	100	78.049	ENSTRUG00000013239	-	100	78.049	Takifugu_rubripes
ENSAMXG00000008540	PRDM12	100	80.163	ENSTNIG00000009020	prdm12b	99	81.572	Tetraodon_nigroviridis
ENSAMXG00000008540	PRDM12	100	79.494	ENSTNIG00000005859	-	99	79.494	Tetraodon_nigroviridis
ENSAMXG00000008540	PRDM12	90	84.356	ENSUAMG00000009653	PRDM12	96	80.172	Ursus_americanus
ENSAMXG00000008540	PRDM12	90	84.356	ENSVVUG00000027662	PRDM12	78	84.356	Vulpes_vulpes
ENSAMXG00000008540	PRDM12	100	81.183	ENSXCOG00000002836	prdm12b	99	81.183	Xiphophorus_couchianus
ENSAMXG00000008540	PRDM12	100	75.926	ENSXMAG00000028012	-	100	76.984	Xiphophorus_maculatus
ENSAMXG00000008540	PRDM12	100	80.533	ENSXMAG00000005537	prdm12b	100	80.533	Xiphophorus_maculatus