EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000008585 (Gene tree)
Gene ID: 103037277
Gene Symbol: scaf4a
Alias: fa96d07|si:dkey-50p8.3|wu:fa96d07
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 20085 bases
Position: chr20:32661013-32681097
Accession: 103037277
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000008842	RRM_1	PF00076.22	4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000008842	-	4822	XM_007247250	ENSAMXP00000008842	1038 (aa)	XP_007247312	W5KMN0

Gene Model

Click here to download ENSAMXG00000008585's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000008585's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000008585	scaf4a	60	63.102	ENSG00000156304	SCAF4	93	50.821	Homo_sapiens
ENSAMXG00000008585	scaf4a	84	59.913	ENSAPOG00000002946	scaf4a	88	54.280	Acanthochromis_polyacanthus
ENSAMXG00000008585	scaf4a	84	60.130	ENSAOCG00000000615	scaf4a	88	54.457	Amphiprion_ocellaris
ENSAMXG00000008585	scaf4a	99	53.559	ENSAPEG00000021229	scaf4a	99	51.730	Amphiprion_percula
ENSAMXG00000008585	scaf4a	86	62.162	ENSAPLG00000002509	SCAF4	93	51.318	Anas_platyrhynchos
ENSAMXG00000008585	scaf4a	53	71.277	ENSACAG00000002569	SCAF4	80	53.902	Anolis_carolinensis
ENSAMXG00000008585	scaf4a	60	62.952	ENSANAG00000037494	SCAF4	93	49.643	Aotus_nancymaae
ENSAMXG00000008585	scaf4a	60	62.443	ENSBTAG00000018855	SCAF4	93	49.731	Bos_taurus
ENSAMXG00000008585	scaf4a	60	62.896	ENSCJAG00000008993	SCAF4	92	57.668	Callithrix_jacchus
ENSAMXG00000008585	scaf4a	59	62.154	ENSCAFG00000008863	SCAF4	93	49.954	Canis_familiaris
ENSAMXG00000008585	scaf4a	59	60.748	ENSCAFG00020026019	SCAF4	90	45.550	Canis_lupus_dingo
ENSAMXG00000008585	scaf4a	60	61.919	ENSCHIG00000008385	SCAF4	93	49.686	Capra_hircus
ENSAMXG00000008585	scaf4a	60	62.033	ENSCPOG00000012443	SCAF4	97	47.733	Cavia_porcellus
ENSAMXG00000008585	scaf4a	60	62.896	ENSCCAG00000033727	SCAF4	93	49.821	Cebus_capucinus
ENSAMXG00000008585	scaf4a	59	63.407	ENSCATG00000030379	SCAF4	93	49.510	Cercocebus_atys
ENSAMXG00000008585	scaf4a	59	60.455	ENSCLAG00000006298	SCAF4	93	48.661	Chinchilla_lanigera
ENSAMXG00000008585	scaf4a	60	62.969	ENSCSAG00000009438	SCAF4	93	49.733	Chlorocebus_sabaeus
ENSAMXG00000008585	scaf4a	60	62.952	ENSCANG00000029847	SCAF4	93	49.955	Colobus_angolensis_palliatus
ENSAMXG00000008585	scaf4a	99	49.584	ENSCSEG00000019549	scaf4a	87	49.242	Cynoglossus_semilaevis
ENSAMXG00000008585	scaf4a	64	58.545	ENSCVAG00000009142	scaf4b	71	58.545	Cyprinodon_variegatus
ENSAMXG00000008585	scaf4a	98	70.901	ENSDARG00000077093	scaf4a	87	69.215	Danio_rerio
ENSAMXG00000008585	scaf4a	61	57.840	ENSDNOG00000019014	SCAF4	88	47.928	Dasypus_novemcinctus
ENSAMXG00000008585	scaf4a	60	62.179	ENSEASG00005007756	SCAF4	93	50.000	Equus_asinus_asinus
ENSAMXG00000008585	scaf4a	80	82.051	ENSELUG00000009909	scaf4a	61	82.474	Esox_lucius
ENSAMXG00000008585	scaf4a	50	52.282	ENSELUG00000002779	SCAF8	75	52.101	Esox_lucius
ENSAMXG00000008585	scaf4a	60	62.519	ENSFCAG00000002228	SCAF4	93	50.269	Felis_catus
ENSAMXG00000008585	scaf4a	60	58.746	ENSFDAG00000017780	SCAF4	93	47.869	Fukomys_damarensis
ENSAMXG00000008585	scaf4a	99	60.281	ENSFHEG00000017866	scaf4a	83	58.430	Fundulus_heteroclitus
ENSAMXG00000008585	scaf4a	61	64.006	ENSGALG00000033965	SCAF4	93	52.936	Gallus_gallus
ENSAMXG00000008585	scaf4a	71	72.222	ENSGGOG00000015557	SCAF4	75	58.085	Gorilla_gorilla
ENSAMXG00000008585	scaf4a	100	51.744	ENSHBUG00000007920	scaf4a	91	50.866	Haplochromis_burtoni
ENSAMXG00000008585	scaf4a	60	60.889	ENSHGLG00000010582	SCAF4	93	49.331	Heterocephalus_glaber_female
ENSAMXG00000008585	scaf4a	59	60.212	ENSHGLG00100009441	SCAF4	93	48.780	Heterocephalus_glaber_male
ENSAMXG00000008585	scaf4a	54	85.294	ENSHCOG00000006849	scaf4a	83	67.727	Hippocampus_comes
ENSAMXG00000008585	scaf4a	100	70.459	ENSIPUG00000011285	scaf4	100	71.128	Ictalurus_punctatus
ENSAMXG00000008585	scaf4a	59	54.281	ENSSTOG00000004450	SCAF4	93	45.009	Ictidomys_tridecemlineatus
ENSAMXG00000008585	scaf4a	59	61.171	ENSJJAG00000019447	Scaf4	93	49.132	Jaculus_jaculus
ENSAMXG00000008585	scaf4a	61	58.974	ENSKMAG00000005742	scaf4b	71	58.608	Kryptolebias_marmoratus
ENSAMXG00000008585	scaf4a	81	55.752	ENSLBEG00000014675	scaf4a	99	49.912	Labrus_bergylta
ENSAMXG00000008585	scaf4a	51	53.543	ENSLACG00000001394	SCAF8	50	52.964	Latimeria_chalumnae
ENSAMXG00000008585	scaf4a	52	45.120	ENSLACG00000013913	SCAF4	93	49.904	Latimeria_chalumnae
ENSAMXG00000008585	scaf4a	99	57.534	ENSLOCG00000009162	scaf4a	93	60.097	Lepisosteus_oculatus
ENSAMXG00000008585	scaf4a	50	75.439	ENSLAFG00000010710	SCAF4	93	51.695	Loxodonta_africana
ENSAMXG00000008585	scaf4a	60	62.462	ENSMFAG00000037668	SCAF4	93	49.242	Macaca_fascicularis
ENSAMXG00000008585	scaf4a	60	62.462	ENSMMUG00000001712	SCAF4	93	49.242	Macaca_mulatta
ENSAMXG00000008585	scaf4a	60	62.462	ENSMNEG00000032966	SCAF4	93	49.507	Macaca_nemestrina
ENSAMXG00000008585	scaf4a	59	62.043	ENSMLEG00000039674	SCAF4	93	48.873	Mandrillus_leucophaeus
ENSAMXG00000008585	scaf4a	70	46.689	ENSMAMG00000013223	scaf4a	99	45.549	Mastacembelus_armatus
ENSAMXG00000008585	scaf4a	99	53.066	ENSMZEG00005024349	scaf4a	91	51.524	Maylandia_zebra
ENSAMXG00000008585	scaf4a	64	59.486	ENSMGAG00000014515	SCAF4	93	52.722	Meleagris_gallopavo
ENSAMXG00000008585	scaf4a	60	61.178	ENSMAUG00000013307	Scaf4	93	49.364	Mesocricetus_auratus
ENSAMXG00000008585	scaf4a	59	64.196	ENSMICG00000005256	SCAF4	93	50.415	Microcebus_murinus
ENSAMXG00000008585	scaf4a	60	65.669	ENSMODG00000021040	SCAF4	93	52.941	Monodelphis_domestica
ENSAMXG00000008585	scaf4a	60	60.784	ENSMPUG00000001078	SCAF4	93	48.929	Mustela_putorius_furo
ENSAMXG00000008585	scaf4a	60	61.677	ENSNGAG00000005214	Scaf4	93	49.822	Nannospalax_galili
ENSAMXG00000008585	scaf4a	60	63.253	ENSNLEG00000003569	SCAF4	93	49.642	Nomascus_leucogenys
ENSAMXG00000008585	scaf4a	60	65.157	ENSODEG00000002718	SCAF4	93	47.285	Octodon_degus
ENSAMXG00000008585	scaf4a	87	51.827	ENSONIG00000004687	scaf4a	98	51.476	Oreochromis_niloticus
ENSAMXG00000008585	scaf4a	60	62.462	ENSOCUG00000008336	SCAF4	93	50.408	Oryctolagus_cuniculus
ENSAMXG00000008585	scaf4a	92	59.446	ENSORLG00000004384	scaf4a	89	56.767	Oryzias_latipes
ENSAMXG00000008585	scaf4a	66	58.545	ENSORLG00000003420	scaf4b	70	57.455	Oryzias_latipes
ENSAMXG00000008585	scaf4a	74	58.920	ENSORLG00020011857	scaf4a	65	54.831	Oryzias_latipes_hni
ENSAMXG00000008585	scaf4a	66	58.545	ENSORLG00020013853	scaf4b	70	57.455	Oryzias_latipes_hni
ENSAMXG00000008585	scaf4a	87	64.256	ENSOMEG00000014482	scaf4a	88	55.283	Oryzias_melastigma
ENSAMXG00000008585	scaf4a	57	64.308	ENSOGAG00000014653	SCAF4	76	51.117	Otolemur_garnettii
ENSAMXG00000008585	scaf4a	59	61.035	ENSOARG00000013894	SCAF4	92	48.967	Ovis_aries
ENSAMXG00000008585	scaf4a	60	63.102	ENSPPAG00000028535	SCAF4	93	50.000	Pan_paniscus
ENSAMXG00000008585	scaf4a	59	62.290	ENSPPRG00000000635	SCAF4	93	50.045	Panthera_pardus
ENSAMXG00000008585	scaf4a	59	63.183	ENSPTIG00000021578	SCAF4	92	49.123	Panthera_tigris_altaica
ENSAMXG00000008585	scaf4a	60	63.102	ENSPTRG00000013848	SCAF4	93	50.000	Pan_troglodytes
ENSAMXG00000008585	scaf4a	60	62.462	ENSPANG00000017332	SCAF4	93	49.368	Papio_anubis
ENSAMXG00000008585	scaf4a	67	68.801	ENSPKIG00000022408	scaf4a	99	69.178	Paramormyrops_kingsleyae
ENSAMXG00000008585	scaf4a	96	49.504	ENSPSIG00000014242	SCAF4	90	52.437	Pelodiscus_sinensis
ENSAMXG00000008585	scaf4a	73	57.508	ENSPMGG00000016741	scaf4a	78	60.627	Periophthalmus_magnuspinnatus
ENSAMXG00000008585	scaf4a	59	64.809	ENSPCIG00000028183	SCAF4	85	52.982	Phascolarctos_cinereus
ENSAMXG00000008585	scaf4a	92	54.078	ENSPFOG00000017156	scaf4a	96	53.479	Poecilia_formosa
ENSAMXG00000008585	scaf4a	60	57.040	ENSPMEG00000006666	-	73	56.786	Poecilia_mexicana
ENSAMXG00000008585	scaf4a	59	58.696	ENSPREG00000013510	scaf4b	73	56.940	Poecilia_reticulata
ENSAMXG00000008585	scaf4a	60	63.102	ENSPPYG00000011355	SCAF4	93	50.045	Pongo_abelii
ENSAMXG00000008585	scaf4a	55	68.581	ENSPCAG00000009998	SCAF4	93	49.093	Procavia_capensis
ENSAMXG00000008585	scaf4a	59	64.353	ENSPCOG00000018710	SCAF4	92	51.754	Propithecus_coquereli
ENSAMXG00000008585	scaf4a	60	62.481	ENSPVAG00000005220	SCAF4	93	50.271	Pteropus_vampyrus
ENSAMXG00000008585	scaf4a	100	79.376	ENSPNAG00000016892	scaf4a	100	81.474	Pygocentrus_nattereri
ENSAMXG00000008585	scaf4a	59	62.620	ENSRBIG00000040007	SCAF4	92	48.311	Rhinopithecus_bieti
ENSAMXG00000008585	scaf4a	60	63.102	ENSRROG00000029488	SCAF4	93	50.090	Rhinopithecus_roxellana
ENSAMXG00000008585	scaf4a	60	64.207	ENSSHAG00000001581	SCAF4	96	52.102	Sarcophilus_harrisii
ENSAMXG00000008585	scaf4a	87	56.174	ENSSFOG00015006338	scaf4a	98	55.304	Scleropages_formosus
ENSAMXG00000008585	scaf4a	97	50.882	ENSSMAG00000017901	scaf4a	99	49.543	Scophthalmus_maximus
ENSAMXG00000008585	scaf4a	82	49.076	ENSSMAG00000003738	scaf4b	51	45.707	Scophthalmus_maximus
ENSAMXG00000008585	scaf4a	83	58.793	ENSSDUG00000012918	scaf4a	99	51.306	Seriola_dumerili
ENSAMXG00000008585	scaf4a	83	58.707	ENSSLDG00000021671	scaf4a	99	50.969	Seriola_lalandi_dorsalis
ENSAMXG00000008585	scaf4a	60	62.861	ENSSARG00000009994	SCAF4	93	49.283	Sorex_araneus
ENSAMXG00000008585	scaf4a	60	61.699	ENSSSCG00000021023	SCAF4	93	50.362	Sus_scrofa
ENSAMXG00000008585	scaf4a	50	62.150	ENSTGUG00000013464	SCAF4	76	58.678	Taeniopygia_guttata
ENSAMXG00000008585	scaf4a	82	42.890	ENSTRUG00000009536	-	54	77.622	Takifugu_rubripes
ENSAMXG00000008585	scaf4a	60	62.840	ENSUAMG00000008860	SCAF4	93	51.244	Ursus_americanus
ENSAMXG00000008585	scaf4a	59	63.942	ENSUMAG00000016962	SCAF4	93	51.134	Ursus_maritimus
ENSAMXG00000008585	scaf4a	59	62.016	ENSVVUG00000002953	SCAF4	93	49.817	Vulpes_vulpes
ENSAMXG00000008585	scaf4a	66	51.950	ENSXETG00000007351	scaf4	86	49.053	Xenopus_tropicalis