EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSAMXG00000008599 (Gene tree)
Gene ID
103023186
Gene Symbol
pabpc1b
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1
Gene Type
protein_coding
Species
Astyanax_mexicanus
Status
putative
Strand
Minus strand
Length
10960 bases
Position
chr23:11641800-11652759
Accession
103023186
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSAMXP00000008858PABPPF00658.183.9e-3211
ENSAMXP00000008858RRM_5PF13893.68.6e-0912
ENSAMXP00000008858RRM_5PF13893.68.6e-0922
ENSAMXP00000008858RRM_1PF00076.224.2e-9014
ENSAMXP00000008858RRM_1PF00076.224.2e-9024
ENSAMXP00000008858RRM_1PF00076.224.2e-9034
ENSAMXP00000008858RRM_1PF00076.224.2e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSAMXT00000008858-4995XM_007230817ENSAMXP00000008858634 (aa)XP_007230879W5KMP6
Gene Model
Click here to download ENSAMXG00000008599's gene model file
Pathways
Pathway IDPathway NameSource
amex03013RNA transportKEGG
amex03015mRNA surveillance pathwayKEGG
amex03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000008599's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSAMXG00000008599pabpc1b5832.484ENSAMXG00000031223elavl1a9232.484
ENSAMXG00000008599pabpc1b10091.969ENSAMXG00000018395-10091.969
ENSAMXG00000008599pabpc1b9972.598ENSAMXG00000018779pabpc49873.071
ENSAMXG00000008599pabpc1b5136.047ENSAMXG00000005933celf25936.047
ENSAMXG00000008599pabpc1b5430.435ENSAMXG00000013750trnau1apa6130.435
ENSAMXG00000008599pabpc1b5736.905ENSAMXG00000006391elavl1b9431.788
ENSAMXG00000008599pabpc1b5738.251ENSAMXG00000008282sf3b47438.251
ENSAMXG00000008599pabpc1b5937.349ENSAMXG00000040498elavl39237.349
ENSAMXG00000008599pabpc1b5336.047ENSAMXG00000020576celf15336.047
ENSAMXG00000008599pabpc1b9872.170ENSAMXG00000013552pabpc1l9972.170
ENSAMXG00000008599pabpc1b7330.204ENSAMXG00000037884tia1l9130.325
ENSAMXG00000008599pabpc1b5937.349ENSAMXG00000036990ELAVL28437.349
ENSAMXG00000008599pabpc1b5936.145ENSAMXG00000000687elavl48736.145
ENSAMXG00000008599pabpc1b6230.233ENSAMXG00000036570puf60a5530.233
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSAMXG00000008599pabpc1b5879.592ENSG00000184388PABPC1L2B9879.592Homo_sapiens
ENSAMXG00000008599pabpc1b5879.592ENSG00000186288PABPC1L2A9879.592Homo_sapiens
ENSAMXG00000008599pabpc1b10095.276ENSAPOG00000017776pabpc1b10095.276Acanthochromis_polyacanthus
ENSAMXG00000008599pabpc1b10090.282ENSAPOG00000015105pabpc1a10090.282Acanthochromis_polyacanthus
ENSAMXG00000008599pabpc1b5979.592ENSAMEG00000019441-9879.592Ailuropoda_melanoleuca
ENSAMXG00000008599pabpc1b10090.596ENSACIG00000004685pabpc1a10090.596Amphilophus_citrinellus
ENSAMXG00000008599pabpc1b10089.969ENSACIG00000018366pabpc1b10089.969Amphilophus_citrinellus
ENSAMXG00000008599pabpc1b10095.433ENSAOCG00000019839pabpc1b10095.276Amphiprion_ocellaris
ENSAMXG00000008599pabpc1b10090.439ENSAOCG00000011656pabpc1a10090.596Amphiprion_ocellaris
ENSAMXG00000008599pabpc1b10090.439ENSAPEG00000006963pabpc1a10090.596Amphiprion_percula
ENSAMXG00000008599pabpc1b10095.433ENSAPEG00000010435pabpc1b10095.276Amphiprion_percula
ENSAMXG00000008599pabpc1b10090.439ENSATEG00000024852pabpc1a10090.596Anabas_testudineus
ENSAMXG00000008599pabpc1b10093.868ENSATEG00000012917pabpc1b10093.868Anabas_testudineus
ENSAMXG00000008599pabpc1b5879.592ENSANAG00000019431-9879.592Aotus_nancymaae
ENSAMXG00000008599pabpc1b5879.592ENSANAG00000019429-9879.592Aotus_nancymaae
ENSAMXG00000008599pabpc1b10093.543ENSACLG00000014335pabpc1b10093.543Astatotilapia_calliptera
ENSAMXG00000008599pabpc1b9991.972ENSACLG00000009399pabpc1a10091.972Astatotilapia_calliptera
ENSAMXG00000008599pabpc1b5976.555ENSBTAG00000052491-9876.555Bos_taurus
ENSAMXG00000008599pabpc1b5978.537ENSBTAG00000050902-9878.537Bos_taurus
ENSAMXG00000008599pabpc1b5879.592ENSCJAG00000041326-9879.592Callithrix_jacchus
ENSAMXG00000008599pabpc1b5978.537ENSCAFG00020002052-9878.537Canis_lupus_dingo
ENSAMXG00000008599pabpc1b5879.592ENSCHIG00000006283-9879.592Capra_hircus
ENSAMXG00000008599pabpc1b5879.592ENSCHIG00000011138-9879.592Capra_hircus
ENSAMXG00000008599pabpc1b5879.592ENSTSYG00000001775-9879.592Carlito_syrichta
ENSAMXG00000008599pabpc1b5979.592ENSCPOG00000009525-9879.592Cavia_porcellus
ENSAMXG00000008599pabpc1b5879.592ENSCCAG00000031524-9879.592Cebus_capucinus
ENSAMXG00000008599pabpc1b5879.592ENSCATG00000042826-9879.592Cercocebus_atys
ENSAMXG00000008599pabpc1b5879.592ENSCATG00000043125-9879.592Cercocebus_atys
ENSAMXG00000008599pabpc1b5877.551ENSCLAG00000017412-9877.551Chinchilla_lanigera
ENSAMXG00000008599pabpc1b5877.551ENSCLAG00000017409-9877.551Chinchilla_lanigera
ENSAMXG00000008599pabpc1b5979.592ENSCSAG00000000102-9879.592Chlorocebus_sabaeus
ENSAMXG00000008599pabpc1b5879.558ENSCGRG00001023387-9676.923Cricetulus_griseus_chok1gshd
ENSAMXG00000008599pabpc1b10091.024ENSCSEG00000015241-10090.866Cynoglossus_semilaevis
ENSAMXG00000008599pabpc1b9990.476ENSCSEG00000013324pabpc1a9990.635Cynoglossus_semilaevis
ENSAMXG00000008599pabpc1b10092.138ENSCVAG00000005489pabpc1b10092.138Cyprinodon_variegatus
ENSAMXG00000008599pabpc1b10090.282ENSCVAG00000021872pabpc1a10090.282Cyprinodon_variegatus
ENSAMXG00000008599pabpc1b10095.741ENSDARG00000021140pabpc1b10095.741Danio_rerio
ENSAMXG00000008599pabpc1b10092.283ENSDARG00000017219pabpc1a10092.283Danio_rerio
ENSAMXG00000008599pabpc1b5979.894ENSDNOG00000030926-9878.061Dasypus_novemcinctus
ENSAMXG00000008599pabpc1b5877.041ENSDORG00000011362-9877.041Dipodomys_ordii
ENSAMXG00000008599pabpc1b5978.155ENSEASG00005010399-9878.155Equus_asinus_asinus
ENSAMXG00000008599pabpc1b5978.155ENSECAG00000002620-9878.155Equus_caballus
ENSAMXG00000008599pabpc1b5975.000ENSEEUG00000008203-9875.000Erinaceus_europaeus
ENSAMXG00000008599pabpc1b5959.914ENSELUG00000005389-9759.914Esox_lucius
ENSAMXG00000008599pabpc1b10092.308ENSELUG00000015062-10092.151Esox_lucius
ENSAMXG00000008599pabpc1b9991.824ENSELUG00000003614pabpc1a10091.824Esox_lucius
ENSAMXG00000008599pabpc1b5879.592ENSFCAG00000039701-9879.592Felis_catus
ENSAMXG00000008599pabpc1b5979.592ENSFDAG00000005484-9879.592Fukomys_damarensis
ENSAMXG00000008599pabpc1b10091.654ENSFHEG00000008186pabpc1b10092.126Fundulus_heteroclitus
ENSAMXG00000008599pabpc1b10090.125ENSFHEG00000018979pabpc1a10090.282Fundulus_heteroclitus
ENSAMXG00000008599pabpc1b10084.448ENSGMOG00000002448-10084.292Gadus_morhua
ENSAMXG00000008599pabpc1b9989.319ENSGMOG00000013448pabpc1a9989.319Gadus_morhua
ENSAMXG00000008599pabpc1b10092.913ENSGAFG00000010193pabpc1b10093.386Gambusia_affinis
ENSAMXG00000008599pabpc1b10089.969ENSGAFG00000019750pabpc1a10090.125Gambusia_affinis
ENSAMXG00000008599pabpc1b10090.282ENSGACG00000003572pabpc1a10090.282Gasterosteus_aculeatus
ENSAMXG00000008599pabpc1b10092.068ENSGACG00000003771pabpc1b10092.535Gasterosteus_aculeatus
ENSAMXG00000008599pabpc1b5879.592ENSGGOG00000038606-9879.592Gorilla_gorilla
ENSAMXG00000008599pabpc1b5879.592ENSGGOG00000043933-9879.592Gorilla_gorilla
ENSAMXG00000008599pabpc1b10093.543ENSHBUG00000002075pabpc1b10093.543Haplochromis_burtoni
ENSAMXG00000008599pabpc1b9991.972ENSHBUG00000020487pabpc1a10091.972Haplochromis_burtoni
ENSAMXG00000008599pabpc1b5878.571ENSHGLG00000019762-9878.571Heterocephalus_glaber_female
ENSAMXG00000008599pabpc1b5878.571ENSHGLG00000019668-9878.571Heterocephalus_glaber_female
ENSAMXG00000008599pabpc1b5878.571ENSHGLG00100020854-9878.571Heterocephalus_glaber_male
ENSAMXG00000008599pabpc1b10089.812ENSHCOG00000013502pabpc1a10089.969Hippocampus_comes
ENSAMXG00000008599pabpc1b9874.735ENSHCOG00000003175pabpc1b9974.735Hippocampus_comes
ENSAMXG00000008599pabpc1b10088.976ENSIPUG00000010791-10089.134Ictalurus_punctatus
ENSAMXG00000008599pabpc1b8358.209ENSIPUG00000018724-7658.209Ictalurus_punctatus
ENSAMXG00000008599pabpc1b7455.021ENSIPUG00000021244-6555.021Ictalurus_punctatus
ENSAMXG00000008599pabpc1b10090.236ENSIPUG00000008848pabpc1a10090.236Ictalurus_punctatus
ENSAMXG00000008599pabpc1b5979.082ENSSTOG00000022096-9879.082Ictidomys_tridecemlineatus
ENSAMXG00000008599pabpc1b5979.082ENSSTOG00000026028-9879.082Ictidomys_tridecemlineatus
ENSAMXG00000008599pabpc1b5878.061ENSJJAG00000007037-9878.061Jaculus_jaculus
ENSAMXG00000008599pabpc1b10091.654ENSKMAG00000008049pabpc1b10091.811Kryptolebias_marmoratus
ENSAMXG00000008599pabpc1b10090.439ENSKMAG00000000605pabpc1a10090.439Kryptolebias_marmoratus
ENSAMXG00000008599pabpc1b10089.969ENSLBEG00000024002-10089.969Labrus_bergylta
ENSAMXG00000008599pabpc1b10094.488ENSLBEG00000026845pabpc1b10094.488Labrus_bergylta
ENSAMXG00000008599pabpc1b5978.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSAMXG00000008599pabpc1b5879.188ENSMFAG00000028878-9879.188Macaca_fascicularis
ENSAMXG00000008599pabpc1b5879.592ENSMMUG00000039929-9879.592Macaca_mulatta
ENSAMXG00000008599pabpc1b5879.592ENSMMUG00000009740-9879.592Macaca_mulatta
ENSAMXG00000008599pabpc1b5879.592ENSMMUG00000037681-9879.592Macaca_mulatta
ENSAMXG00000008599pabpc1b5879.592ENSMNEG00000037732-9879.592Macaca_nemestrina
ENSAMXG00000008599pabpc1b5879.592ENSMLEG00000027495-9879.592Mandrillus_leucophaeus
ENSAMXG00000008599pabpc1b10095.118ENSMAMG00000014610pabpc1b10095.118Mastacembelus_armatus
ENSAMXG00000008599pabpc1b9990.826ENSMAMG00000004502-10090.826Mastacembelus_armatus
ENSAMXG00000008599pabpc1b9991.972ENSMZEG00005025416pabpc1a10091.972Maylandia_zebra
ENSAMXG00000008599pabpc1b10093.543ENSMZEG00005026745pabpc1b10093.543Maylandia_zebra
ENSAMXG00000008599pabpc1b5879.592ENSMICG00000047642-9879.592Microcebus_murinus
ENSAMXG00000008599pabpc1b9990.596ENSMMOG00000018044pabpc1a10090.596Mola_mola
ENSAMXG00000008599pabpc1b10087.874ENSMMOG00000018009pabpc1b10088.031Mola_mola
ENSAMXG00000008599pabpc1b9967.138ENSMODG00000015024-9967.138Monodelphis_domestica
ENSAMXG00000008599pabpc1b9873.885ENSMODG00000013156-9874.045Monodelphis_domestica
ENSAMXG00000008599pabpc1b10089.969ENSMALG00000013020-10090.282Monopterus_albus
ENSAMXG00000008599pabpc1b10088.346ENSMALG00000006066pabpc1b10088.504Monopterus_albus
ENSAMXG00000008599pabpc1b5881.421ENSNGAG00000012688-9878.061Nannospalax_galili
ENSAMXG00000008599pabpc1b9991.972ENSNBRG00000003068-10091.972Neolamprologus_brichardi
ENSAMXG00000008599pabpc1b10093.858ENSNBRG00000013737pabpc1b10093.858Neolamprologus_brichardi
ENSAMXG00000008599pabpc1b5879.592ENSNLEG00000018128-9879.592Nomascus_leucogenys
ENSAMXG00000008599pabpc1b5879.082ENSODEG00000018540-9879.082Octodon_degus
ENSAMXG00000008599pabpc1b10090.125ENSONIG00000006871-10090.125Oreochromis_niloticus
ENSAMXG00000008599pabpc1b10093.386ENSONIG00000002717pabpc1b10093.386Oreochromis_niloticus
ENSAMXG00000008599pabpc1b5979.592ENSOCUG00000002565-9879.592Oryctolagus_cuniculus
ENSAMXG00000008599pabpc1b9994.048ENSORLG00000002691pabpc1a9694.048Oryzias_latipes
ENSAMXG00000008599pabpc1b10085.984ENSORLG00000003008-10085.984Oryzias_latipes
ENSAMXG00000008599pabpc1b10085.984ENSORLG00020022259-10085.984Oryzias_latipes_hni
ENSAMXG00000008599pabpc1b10089.498ENSORLG00020022398pabpc1a10089.655Oryzias_latipes_hni
ENSAMXG00000008599pabpc1b10089.342ENSORLG00015013633pabpc110089.498Oryzias_latipes_hsok
ENSAMXG00000008599pabpc1b10086.299ENSORLG00015010932-10086.299Oryzias_latipes_hsok
ENSAMXG00000008599pabpc1b9583.982ENSOMEG00000013627pabpc1b10083.982Oryzias_melastigma
ENSAMXG00000008599pabpc1b10089.655ENSOMEG00000020219pabpc1a10089.812Oryzias_melastigma
ENSAMXG00000008599pabpc1b5979.592ENSOGAG00000029513-9879.592Otolemur_garnettii
ENSAMXG00000008599pabpc1b5979.592ENSOGAG00000026047-9879.592Otolemur_garnettii
ENSAMXG00000008599pabpc1b5979.592ENSOARG00000005943-9879.592Ovis_aries
ENSAMXG00000008599pabpc1b5879.592ENSPPAG00000012920-9879.592Pan_paniscus
ENSAMXG00000008599pabpc1b5979.592ENSPPRG00000011804-9879.592Panthera_pardus
ENSAMXG00000008599pabpc1b5979.592ENSPPRG00000011809-9879.592Panthera_pardus
ENSAMXG00000008599pabpc1b5879.592ENSPTRG00000028252-9879.592Pan_troglodytes
ENSAMXG00000008599pabpc1b5879.592ENSPANG00000011549-9879.592Papio_anubis
ENSAMXG00000008599pabpc1b10096.215ENSPKIG00000005676pabpc1b10096.215Paramormyrops_kingsleyae
ENSAMXG00000008599pabpc1b7093.258ENSPMGG00000022487pabpc1a9293.258Periophthalmus_magnuspinnatus
ENSAMXG00000008599pabpc1b7092.825ENSPMGG00000023134-9792.825Periophthalmus_magnuspinnatus
ENSAMXG00000008599pabpc1b9971.224ENSPCIG00000016995-5570.860Phascolarctos_cinereus
ENSAMXG00000008599pabpc1b10092.756ENSPFOG00000005917pabpc1b10093.228Poecilia_formosa
ENSAMXG00000008599pabpc1b10088.923ENSPFOG00000010815pabpc1a10089.077Poecilia_formosa
ENSAMXG00000008599pabpc1b10090.439ENSPLAG00000004114pabpc1a10090.596Poecilia_latipinna
ENSAMXG00000008599pabpc1b10093.071ENSPLAG00000001388pabpc1b10093.543Poecilia_latipinna
ENSAMXG00000008599pabpc1b10092.756ENSPMEG00000014399pabpc1b10093.228Poecilia_mexicana
ENSAMXG00000008599pabpc1b10090.439ENSPMEG00000001334pabpc1a10090.596Poecilia_mexicana
ENSAMXG00000008599pabpc1b9991.514ENSPREG00000019595pabpc1a10091.514Poecilia_reticulata
ENSAMXG00000008599pabpc1b10093.071ENSPREG00000010911pabpc1b10093.543Poecilia_reticulata
ENSAMXG00000008599pabpc1b5979.592ENSPPYG00000020468-9879.592Pongo_abelii
ENSAMXG00000008599pabpc1b5979.592ENSPCAG00000005308-9879.592Procavia_capensis
ENSAMXG00000008599pabpc1b5879.082ENSPCOG00000026349-9879.082Propithecus_coquereli
ENSAMXG00000008599pabpc1b5980.000ENSPVAG00000016117-9880.000Pteropus_vampyrus
ENSAMXG00000008599pabpc1b10093.543ENSPNYG00000012578pabpc1b10093.543Pundamilia_nyererei
ENSAMXG00000008599pabpc1b10090.439ENSPNYG00000005192pabpc1a10090.439Pundamilia_nyererei
ENSAMXG00000008599pabpc1b10097.950ENSPNAG00000024626pabpc1b10097.950Pygocentrus_nattereri
ENSAMXG00000008599pabpc1b10091.339ENSPNAG00000028408pabpc1a10091.339Pygocentrus_nattereri
ENSAMXG00000008599pabpc1b9969.378ENSRBIG00000028738-8487.665Rhinopithecus_bieti
ENSAMXG00000008599pabpc1b5879.592ENSRBIG00000027173-9879.592Rhinopithecus_bieti
ENSAMXG00000008599pabpc1b5879.592ENSRROG00000017404-9879.592Rhinopithecus_roxellana
ENSAMXG00000008599pabpc1b9864.090ENSSHAG00000000511-10064.090Sarcophilus_harrisii
ENSAMXG00000008599pabpc1b7080.347ENSSFOG00015019668-9180.347Scleropages_formosus
ENSAMXG00000008599pabpc1b10090.866ENSSFOG00015006662pabpc1a10091.024Scleropages_formosus
ENSAMXG00000008599pabpc1b10096.057ENSSFOG00015002752-10096.057Scleropages_formosus
ENSAMXG00000008599pabpc1b10094.331ENSSMAG00000006869pabpc1b10094.331Scophthalmus_maximus
ENSAMXG00000008599pabpc1b10089.812ENSSMAG00000010803pabpc1a10089.812Scophthalmus_maximus
ENSAMXG00000008599pabpc1b10092.756ENSSDUG00000011965pabpc1b10092.756Seriola_dumerili
ENSAMXG00000008599pabpc1b10090.752ENSSDUG00000006675pabpc1a10090.752Seriola_dumerili
ENSAMXG00000008599pabpc1b10094.531ENSSLDG00000014156pabpc1b10094.531Seriola_lalandi_dorsalis
ENSAMXG00000008599pabpc1b10090.752ENSSLDG00000011661pabpc1a10090.752Seriola_lalandi_dorsalis
ENSAMXG00000008599pabpc1b10095.433ENSSPAG00000019265pabpc1b10095.433Stegastes_partitus
ENSAMXG00000008599pabpc1b10090.125ENSSPAG00000014453-10090.282Stegastes_partitus
ENSAMXG00000008599pabpc1b5879.592ENSSSCG00000032167-9879.592Sus_scrofa
ENSAMXG00000008599pabpc1b5879.592ENSSSCG00000036336-9879.592Sus_scrofa
ENSAMXG00000008599pabpc1b10089.812ENSTRUG00000011577-10089.812Takifugu_rubripes
ENSAMXG00000008599pabpc1b10090.079ENSTRUG00000003767-10090.079Takifugu_rubripes
ENSAMXG00000008599pabpc1b10090.125ENSTNIG00000009153pabpc1b10090.125Tetraodon_nigroviridis
ENSAMXG00000008599pabpc1b10087.017ENSTNIG00000013307pabpc1a10087.017Tetraodon_nigroviridis
ENSAMXG00000008599pabpc1b5979.592ENSTTRG00000013181-9879.592Tursiops_truncatus
ENSAMXG00000008599pabpc1b5879.592ENSUAMG00000008089-9879.592Ursus_americanus
ENSAMXG00000008599pabpc1b5879.592ENSUMAG00000003364-9879.592Ursus_maritimus
ENSAMXG00000008599pabpc1b9754.058ENSUMAG00000023926-8967.956Ursus_maritimus
ENSAMXG00000008599pabpc1b5978.500ENSVVUG00000015892-9778.500Vulpes_vulpes
ENSAMXG00000008599pabpc1b9944.619ENSXETG00000015439-10044.843Xenopus_tropicalis
ENSAMXG00000008599pabpc1b10088.346ENSXCOG00000019901pabpc1b10088.346Xiphophorus_couchianus
ENSAMXG00000008599pabpc1b10086.751ENSXCOG00000017066pabpc1a10086.909Xiphophorus_couchianus
ENSAMXG00000008599pabpc1b10090.282ENSXMAG00000002555pabpc1a10090.439Xiphophorus_maculatus
ENSAMXG00000008599pabpc1b10093.071ENSXMAG00000003753pabpc1b10093.543Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us