EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000009576 (Gene tree)
Gene ID: 103032809
Gene Symbol: chd6
Alias: si:dkey-6e2.3|zmp:0000000556
Full Name: chromodomain-helicase-DNA-binding protein 6-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 33062 bases
Position: chr13:7006374-7039435
Accession: 103032809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000009861	ResIII	PF04851.15	2.1e-06	1	1
ENSAMXP00000009861	BRK	PF07533.16	8.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000031078	-	1461	-	ENSAMXP00000041744	486 (aa)	-	-
ENSAMXT00000009861	-	8604	XM_022675061	ENSAMXP00000009861	2867 (aa)	XP_022530782	W5KQJ9

Gene Model

Click here to download ENSAMXG00000009576's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000009576's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000009576	chd6	69	64.066	ENSAMXG00000006180	chd7	84	64.137
ENSAMXG00000009576	chd6	69	62.746	ENSAMXG00000005652	chd9	82	62.932

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000009576	chd6	77	69.547	ENSG00000124177	CHD6	99	82.946	Homo_sapiens
ENSAMXG00000009576	chd6	84	71.888	ENSAPOG00000013736	chd6	78	71.221	Acanthochromis_polyacanthus
ENSAMXG00000009576	chd6	77	69.976	ENSAMEG00000009496	CHD6	79	71.231	Ailuropoda_melanoleuca
ENSAMXG00000009576	chd6	92	67.646	ENSATEG00000005608	chd6	78	71.345	Anabas_testudineus
ENSAMXG00000009576	chd6	74	73.574	ENSAPLG00000015592	CHD6	77	73.698	Anas_platyrhynchos
ENSAMXG00000009576	chd6	73	68.922	ENSACAG00000006842	CHD6	77	68.152	Anolis_carolinensis
ENSAMXG00000009576	chd6	77	69.441	ENSANAG00000037548	CHD6	94	86.408	Aotus_nancymaae
ENSAMXG00000009576	chd6	81	69.976	ENSBTAG00000005733	CHD6	81	73.145	Bos_taurus
ENSAMXG00000009576	chd6	74	72.479	ENSCJAG00000017920	CHD6	94	86.408	Callithrix_jacchus
ENSAMXG00000009576	chd6	77	69.958	ENSCAFG00000009236	CHD6	76	73.995	Canis_familiaris
ENSAMXG00000009576	chd6	74	73.268	ENSCAFG00020012906	CHD6	94	86.160	Canis_lupus_dingo
ENSAMXG00000009576	chd6	75	72.698	ENSCHIG00000017606	CHD6	81	73.176	Capra_hircus
ENSAMXG00000009576	chd6	63	75.934	ENSTSYG00000014635	CHD6	79	75.934	Carlito_syrichta
ENSAMXG00000009576	chd6	78	69.660	ENSCPOG00000015641	CHD6	79	71.248	Cavia_porcellus
ENSAMXG00000009576	chd6	74	72.544	ENSCCAG00000036828	CHD6	94	86.408	Cebus_capucinus
ENSAMXG00000009576	chd6	77	70.061	ENSCATG00000039248	CHD6	94	86.408	Cercocebus_atys
ENSAMXG00000009576	chd6	77	69.732	ENSCLAG00000013743	CHD6	76	73.709	Chinchilla_lanigera
ENSAMXG00000009576	chd6	77	69.855	ENSCSAG00000013997	CHD6	77	73.963	Chlorocebus_sabaeus
ENSAMXG00000009576	chd6	58	74.283	ENSCHOG00000012647	CHD6	62	74.526	Choloepus_hoffmanni
ENSAMXG00000009576	chd6	72	75.000	ENSCPBG00000019382	CHD6	80	72.733	Chrysemys_picta_bellii
ENSAMXG00000009576	chd6	77	70.097	ENSCANG00000043435	CHD6	94	86.408	Colobus_angolensis_palliatus
ENSAMXG00000009576	chd6	77	69.485	ENSCGRG00001002694	Chd6	77	72.892	Cricetulus_griseus_chok1gshd
ENSAMXG00000009576	chd6	98	75.060	ENSDARG00000017244	chd6	98	74.683	Danio_rerio
ENSAMXG00000009576	chd6	74	72.085	ENSDNOG00000004176	CHD6	79	71.230	Dasypus_novemcinctus
ENSAMXG00000009576	chd6	77	70.379	ENSEASG00005023433	CHD6	94	87.524	Equus_asinus_asinus
ENSAMXG00000009576	chd6	77	69.933	ENSECAG00000011761	CHD6	76	74.661	Equus_caballus
ENSAMXG00000009576	chd6	71	80.905	ENSELUG00000012309	chd6	94	79.958	Esox_lucius
ENSAMXG00000009576	chd6	78	70.121	ENSFCAG00000003572	CHD6	82	69.384	Felis_catus
ENSAMXG00000009576	chd6	76	73.810	ENSFALG00000012563	CHD6	77	73.531	Ficedula_albicollis
ENSAMXG00000009576	chd6	74	73.077	ENSFDAG00000013791	CHD6	77	73.913	Fukomys_damarensis
ENSAMXG00000009576	chd6	71	74.337	ENSGMOG00000011715	chd6	88	74.337	Gadus_morhua
ENSAMXG00000009576	chd6	78	70.243	ENSGACG00000000037	chd6	87	71.046	Gasterosteus_aculeatus
ENSAMXG00000009576	chd6	77	69.763	ENSGGOG00000013123	CHD6	94	86.408	Gorilla_gorilla
ENSAMXG00000009576	chd6	84	71.991	ENSHBUG00000014701	chd6	76	71.368	Haplochromis_burtoni
ENSAMXG00000009576	chd6	74	72.947	ENSHGLG00000004548	CHD6	77	73.779	Heterocephalus_glaber_female
ENSAMXG00000009576	chd6	74	72.947	ENSHGLG00100006401	CHD6	77	73.779	Heterocephalus_glaber_male
ENSAMXG00000009576	chd6	93	79.713	ENSIPUG00000003692	chd6	97	79.713	Ictalurus_punctatus
ENSAMXG00000009576	chd6	77	69.631	ENSSTOG00000013382	CHD6	77	73.913	Ictidomys_tridecemlineatus
ENSAMXG00000009576	chd6	76	72.236	ENSLACG00000010881	CHD6	79	72.727	Latimeria_chalumnae
ENSAMXG00000009576	chd6	69	81.474	ENSLOCG00000007386	chd6	85	77.489	Lepisosteus_oculatus
ENSAMXG00000009576	chd6	75	72.401	ENSLAFG00000012144	CHD6	80	71.735	Loxodonta_africana
ENSAMXG00000009576	chd6	77	70.158	ENSMFAG00000032830	CHD6	94	86.408	Macaca_fascicularis
ENSAMXG00000009576	chd6	77	69.855	ENSMMUG00000020458	CHD6	94	86.408	Macaca_mulatta
ENSAMXG00000009576	chd6	77	70.158	ENSMNEG00000040847	CHD6	94	86.408	Macaca_nemestrina
ENSAMXG00000009576	chd6	77	70.158	ENSMLEG00000031965	CHD6	94	86.408	Mandrillus_leucophaeus
ENSAMXG00000009576	chd6	91	67.577	ENSMAMG00000013111	chd6	82	67.594	Mastacembelus_armatus
ENSAMXG00000009576	chd6	74	71.887	ENSMGAG00000001121	CHD6	77	72.825	Meleagris_gallopavo
ENSAMXG00000009576	chd6	77	70.000	ENSMICG00000016641	CHD6	94	86.602	Microcebus_murinus
ENSAMXG00000009576	chd6	68	77.436	ENSMODG00000000720	-	79	77.222	Monodelphis_domestica
ENSAMXG00000009576	chd6	77	69.170	MGP_CAROLIEiJ_G0024604	Chd6	87	78.143	Mus_caroli
ENSAMXG00000009576	chd6	77	69.170	ENSMUSG00000057133	Chd6	86	78.999	Mus_musculus
ENSAMXG00000009576	chd6	77	69.109	MGP_PahariEiJ_G0026048	Chd6	86	78.803	Mus_pahari
ENSAMXG00000009576	chd6	77	69.170	MGP_SPRETEiJ_G0025526	Chd6	86	78.999	Mus_spretus
ENSAMXG00000009576	chd6	74	72.947	ENSMPUG00000017695	CHD6	79	71.483	Mustela_putorius_furo
ENSAMXG00000009576	chd6	78	69.639	ENSMLUG00000016247	CHD6	76	74.009	Myotis_lucifugus
ENSAMXG00000009576	chd6	88	71.102	ENSNBRG00000013839	chd6	96	69.331	Neolamprologus_brichardi
ENSAMXG00000009576	chd6	77	68.926	ENSNLEG00000006496	CHD6	77	72.490	Nomascus_leucogenys
ENSAMXG00000009576	chd6	74	70.469	ENSOPRG00000013376	-	77	71.237	Ochotona_princeps
ENSAMXG00000009576	chd6	77	78.281	ENSONIG00000000393	chd6	84	77.842	Oreochromis_niloticus
ENSAMXG00000009576	chd6	62	72.917	ENSOANG00000014347	CHD6	68	72.041	Ornithorhynchus_anatinus
ENSAMXG00000009576	chd6	77	69.375	ENSOCUG00000012394	CHD6	76	73.360	Oryctolagus_cuniculus
ENSAMXG00000009576	chd6	92	63.488	ENSORLG00020021891	chd6	95	88.577	Oryzias_latipes_hni
ENSAMXG00000009576	chd6	74	72.550	ENSOGAG00000002427	CHD6	77	73.561	Otolemur_garnettii
ENSAMXG00000009576	chd6	81	68.565	ENSOARG00000002597	CHD6	81	71.879	Ovis_aries
ENSAMXG00000009576	chd6	78	70.182	ENSPPRG00000014756	CHD6	81	70.289	Panthera_pardus
ENSAMXG00000009576	chd6	78	70.000	ENSPTIG00000011094	CHD6	81	70.104	Panthera_tigris_altaica
ENSAMXG00000009576	chd6	77	69.726	ENSPTRG00000013504	CHD6	94	86.408	Pan_troglodytes
ENSAMXG00000009576	chd6	77	70.219	ENSPANG00000025554	CHD6	94	86.408	Papio_anubis
ENSAMXG00000009576	chd6	90	70.158	ENSPKIG00000005578	chd6	96	62.856	Paramormyrops_kingsleyae
ENSAMXG00000009576	chd6	76	74.656	ENSPMGG00000014877	chd6	91	74.206	Periophthalmus_magnuspinnatus
ENSAMXG00000009576	chd6	74	73.267	ENSPCIG00000028037	CHD6	79	71.919	Phascolarctos_cinereus
ENSAMXG00000009576	chd6	89	66.503	ENSPLAG00000003128	chd6	81	70.302	Poecilia_latipinna
ENSAMXG00000009576	chd6	85	70.456	ENSPREG00000022653	chd6	94	89.883	Poecilia_reticulata
ENSAMXG00000009576	chd6	77	69.642	ENSPPYG00000011016	CHD6	77	73.963	Pongo_abelii
ENSAMXG00000009576	chd6	77	69.697	ENSPCOG00000001089	CHD6	94	86.408	Propithecus_coquereli
ENSAMXG00000009576	chd6	89	71.466	ENSPNYG00000022516	chd6	97	69.541	Pundamilia_nyererei
ENSAMXG00000009576	chd6	98	81.140	ENSPNAG00000012825	chd6	97	82.271	Pygocentrus_nattereri
ENSAMXG00000009576	chd6	76	71.383	ENSRNOG00000016744	Chd6	76	73.320	Rattus_norvegicus
ENSAMXG00000009576	chd6	77	69.714	ENSSBOG00000022089	CHD6	94	86.408	Saimiri_boliviensis_boliviensis
ENSAMXG00000009576	chd6	74	73.193	ENSSHAG00000017072	CHD6	80	71.313	Sarcophilus_harrisii
ENSAMXG00000009576	chd6	92	74.538	ENSSFOG00015012920	chd6	98	72.112	Scleropages_formosus
ENSAMXG00000009576	chd6	53	94.737	ENSSARG00000002615	-	54	94.737	Sorex_araneus
ENSAMXG00000009576	chd6	78	71.148	ENSSSCG00000007360	CHD6	76	75.136	Sus_scrofa
ENSAMXG00000009576	chd6	74	73.272	ENSTGUG00000003179	CHD6	80	73.118	Taeniopygia_guttata
ENSAMXG00000009576	chd6	75	73.266	ENSTNIG00000017487	chd6	91	73.106	Tetraodon_nigroviridis
ENSAMXG00000009576	chd6	72	73.745	ENSTTRG00000013438	CHD6	77	71.973	Tursiops_truncatus
ENSAMXG00000009576	chd6	77	68.940	ENSUAMG00000024036	CHD6	94	86.160	Ursus_americanus
ENSAMXG00000009576	chd6	77	70.463	ENSUMAG00000002017	CHD6	94	86.160	Ursus_maritimus
ENSAMXG00000009576	chd6	71	72.650	ENSVPAG00000007941	CHD6	71	72.650	Vicugna_pacos
ENSAMXG00000009576	chd6	77	69.958	ENSVVUG00000029164	CHD6	76	73.995	Vulpes_vulpes
ENSAMXG00000009576	chd6	72	67.056	ENSXETG00000021445	chd6	77	65.739	Xenopus_tropicalis