EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000009579 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat-containing gene 6C protein
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 18705 bases
Position: chr13:2250457-2269161
Accession: 103041697
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000009848	Ago_hook	PF10427.9	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000009848	-	4566	XM_022675204	ENSAMXP00000009848	1521 (aa)	XP_022530925	W5KQI6

Gene Model

Click here to download ENSAMXG00000009579's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000009579's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000009579	tnrc6c2	87	36.382	ENSAMXG00000019919	tnrc6a	69	36.602

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000009579	tnrc6c2	100	57.783	ENSAOCG00000017648	tnrc6c2	87	59.253	Amphiprion_ocellaris
ENSAMXG00000009579	tnrc6c2	99	57.704	ENSATEG00000003656	tnrc6c2	57	72.316	Anabas_testudineus
ENSAMXG00000009579	tnrc6c2	100	56.778	ENSACLG00000006469	tnrc6c2	88	58.736	Astatotilapia_calliptera
ENSAMXG00000009579	tnrc6c2	99	70.122	ENSDARG00000103851	tnrc6c2	100	69.968	Danio_rerio
ENSAMXG00000009579	tnrc6c2	91	54.750	ENSELUG00000007206	tnrc6c2	100	53.537	Esox_lucius
ENSAMXG00000009579	tnrc6c2	96	51.504	ENSELUG00000008149	-	94	51.050	Esox_lucius
ENSAMXG00000009579	tnrc6c2	100	56.997	ENSFHEG00000003901	tnrc6c2	100	58.388	Fundulus_heteroclitus
ENSAMXG00000009579	tnrc6c2	100	54.337	ENSGACG00000019401	tnrc6c2	90	54.763	Gasterosteus_aculeatus
ENSAMXG00000009579	tnrc6c2	100	56.837	ENSHBUG00000018310	tnrc6c2	88	58.795	Haplochromis_burtoni
ENSAMXG00000009579	tnrc6c2	100	56.213	ENSHCOG00000017802	tnrc6c2	87	56.324	Hippocampus_comes
ENSAMXG00000009579	tnrc6c2	100	68.981	ENSIPUG00000022767	tnrc6c2	100	68.048	Ictalurus_punctatus
ENSAMXG00000009579	tnrc6c2	99	57.904	ENSMAMG00000001718	tnrc6c2	100	58.733	Mastacembelus_armatus
ENSAMXG00000009579	tnrc6c2	100	56.837	ENSMZEG00005023905	tnrc6c2	88	58.795	Maylandia_zebra
ENSAMXG00000009579	tnrc6c2	99	57.741	ENSMALG00000020932	tnrc6c2	100	59.050	Monopterus_albus
ENSAMXG00000009579	tnrc6c2	99	56.780	ENSNBRG00000000452	tnrc6c2	100	57.839	Neolamprologus_brichardi
ENSAMXG00000009579	tnrc6c2	96	56.352	ENSONIG00000018123	tnrc6c2	99	59.338	Oreochromis_niloticus
ENSAMXG00000009579	tnrc6c2	100	56.639	ENSORLG00000003327	tnrc6c2	87	57.151	Oryzias_latipes
ENSAMXG00000009579	tnrc6c2	100	56.826	ENSORLG00020010730	tnrc6c2	87	57.092	Oryzias_latipes_hni
ENSAMXG00000009579	tnrc6c2	100	56.739	ENSORLG00015009232	tnrc6c2	87	57.331	Oryzias_latipes_hsok
ENSAMXG00000009579	tnrc6c2	100	56.732	ENSOMEG00000017952	tnrc6c2	87	57.451	Oryzias_melastigma
ENSAMXG00000009579	tnrc6c2	96	61.915	ENSPFOG00000011590	tnrc6c2	90	61.229	Poecilia_formosa
ENSAMXG00000009579	tnrc6c2	99	56.870	ENSPLAG00000006992	tnrc6c2	100	56.522	Poecilia_latipinna
ENSAMXG00000009579	tnrc6c2	100	58.724	ENSPMEG00000012946	tnrc6c2	100	56.257	Poecilia_mexicana
ENSAMXG00000009579	tnrc6c2	99	57.290	ENSPREG00000015823	tnrc6c2	100	57.031	Poecilia_reticulata
ENSAMXG00000009579	tnrc6c2	99	57.279	ENSPNYG00000002582	tnrc6c2	100	58.522	Pundamilia_nyererei
ENSAMXG00000009579	tnrc6c2	100	84.605	ENSPNAG00000026838	tnrc6c2	100	85.127	Pygocentrus_nattereri
ENSAMXG00000009579	tnrc6c2	99	57.041	ENSSMAG00000015145	tnrc6c2	100	58.422	Scophthalmus_maximus
ENSAMXG00000009579	tnrc6c2	99	58.170	ENSSDUG00000020741	tnrc6c2	100	59.440	Seriola_dumerili
ENSAMXG00000009579	tnrc6c2	99	58.170	ENSSLDG00000002077	tnrc6c2	100	59.381	Seriola_lalandi_dorsalis
ENSAMXG00000009579	tnrc6c2	100	58.195	ENSSPAG00000013052	tnrc6c2	87	59.310	Stegastes_partitus
ENSAMXG00000009579	tnrc6c2	93	67.447	ENSTNIG00000004178	tnrc6c2	92	67.367	Tetraodon_nigroviridis
ENSAMXG00000009579	tnrc6c2	56	65.787	ENSXCOG00000013252	tnrc6c2	100	56.246	Xiphophorus_couchianus
ENSAMXG00000009579	tnrc6c2	99	58.424	ENSXMAG00000006739	tnrc6c2	100	58.767	Xiphophorus_maculatus