EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000010474 (Gene tree)
Gene ID: 103023867
Gene Symbol: msi2b
Alias: zgc:174035|zgc:63812
Full Name: RNA-binding protein Musashi homolog 2
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 406286 bases
Position: chr1:15211350-15617635
Accession: 103023867
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000054954	RRM_1	PF00076.22	9.6e-34	1	2
ENSAMXP00000054954	RRM_1	PF00076.22	9.6e-34	2	2
ENSAMXP00000029710	RRM_1	PF00076.22	1.2e-33	1	2
ENSAMXP00000029710	RRM_1	PF00076.22	1.2e-33	2	2
ENSAMXP00000027560	RRM_1	PF00076.22	2e-33	1	2
ENSAMXP00000027560	RRM_1	PF00076.22	2e-33	2	2
ENSAMXP00000046855	RRM_1	PF00076.22	2e-33	1	2
ENSAMXP00000046855	RRM_1	PF00076.22	2e-33	2	2
ENSAMXP00000010759	RRM_1	PF00076.22	3.2e-29	1	2
ENSAMXP00000010759	RRM_1	PF00076.22	3.2e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000010759	-	942	-	ENSAMXP00000010759	313 (aa)	-	W5KT47
ENSAMXT00000053582	-	1758	XM_022667703	ENSAMXP00000027560	388 (aa)	XP_022523424	UPI000BBDFA87
ENSAMXT00000040237	-	1725	XM_022667660	ENSAMXP00000046855	389 (aa)	XP_022523381	UPI000BBDB9CB
ENSAMXT00000048578	-	1297	-	ENSAMXP00000029710	324 (aa)	-	-
ENSAMXT00000030627	-	1198	-	ENSAMXP00000054954	303 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000010474's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000010474's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000010474	msi2b	55	38.235	ENSAMXG00000037730	-	88	32.343
ENSAMXG00000010474	msi2b	56	50.888	ENSAMXG00000001495	hnrnpdl	87	41.509
ENSAMXG00000010474	msi2b	100	94.859	ENSAMXG00000032796	msi2a	100	94.344
ENSAMXG00000010474	msi2b	55	35.465	ENSAMXG00000030795	tardbpl	56	35.465
ENSAMXG00000010474	msi2b	57	43.605	ENSAMXG00000007065	hnrnpa3	54	41.401
ENSAMXG00000010474	msi2b	56	50.888	ENSAMXG00000039814	hnrnpabb	65	47.393
ENSAMXG00000010474	msi2b	91	36.047	ENSAMXG00000015601	-	76	36.047
ENSAMXG00000010474	msi2b	57	41.860	ENSAMXG00000006296	hnrnpa1a	81	37.647
ENSAMXG00000010474	msi2b	60	45.550	ENSAMXG00000001477	hnrnpd	74	40.756
ENSAMXG00000010474	msi2b	56	48.603	ENSAMXG00000002560	hnrnpaba	81	40.892
ENSAMXG00000010474	msi2b	56	39.535	ENSAMXG00000024951	-	90	36.000
ENSAMXG00000010474	msi2b	87	39.326	ENSAMXG00000019066	dazap1	74	39.326
ENSAMXG00000010474	msi2b	97	76.000	ENSAMXG00000038960	msi1	75	76.689

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000010474	msi2b	97	94.667	ENSG00000153944	MSI2	96	95.000	Homo_sapiens
ENSAMXG00000010474	msi2b	100	94.569	ENSAPOG00000001658	msi2a	100	96.296	Acanthochromis_polyacanthus
ENSAMXG00000010474	msi2b	95	90.798	ENSAMEG00000002697	MSI2	100	90.798	Ailuropoda_melanoleuca
ENSAMXG00000010474	msi2b	100	95.582	ENSACIG00000009475	msi2a	100	88.265	Amphilophus_citrinellus
ENSAMXG00000010474	msi2b	56	87.407	ENSAOCG00000014822	msi2a	69	87.407	Amphiprion_ocellaris
ENSAMXG00000010474	msi2b	100	94.569	ENSAPEG00000007706	msi2a	100	94.569	Amphiprion_percula
ENSAMXG00000010474	msi2b	97	95.683	ENSATEG00000003301	-	100	95.683	Anabas_testudineus
ENSAMXG00000010474	msi2b	100	94.569	ENSATEG00000010498	msi2a	100	96.296	Anabas_testudineus
ENSAMXG00000010474	msi2b	93	96.196	ENSACAG00000005452	MSI2	88	83.333	Anolis_carolinensis
ENSAMXG00000010474	msi2b	98	95.089	ENSANAG00000037827	MSI2	96	95.000	Aotus_nancymaae
ENSAMXG00000010474	msi2b	100	93.930	ENSACLG00000007752	msi2a	100	95.885	Astatotilapia_calliptera
ENSAMXG00000010474	msi2b	100	94.444	ENSBTAG00000004406	MSI2	100	94.444	Bos_taurus
ENSAMXG00000010474	msi2b	78	60.082	WBGene00003423	msi-1	76	59.839	Caenorhabditis_elegans
ENSAMXG00000010474	msi2b	95	96.091	ENSCJAG00000013998	MSI2	96	95.000	Callithrix_jacchus
ENSAMXG00000010474	msi2b	95	90.291	ENSCAFG00020025620	MSI2	81	90.323	Canis_lupus_dingo
ENSAMXG00000010474	msi2b	95	95.765	ENSCHIG00000016580	MSI2	94	95.765	Capra_hircus
ENSAMXG00000010474	msi2b	97	91.135	ENSCPOG00000034042	MSI2	99	91.135	Cavia_porcellus
ENSAMXG00000010474	msi2b	98	95.089	ENSCCAG00000033927	MSI2	96	95.000	Cebus_capucinus
ENSAMXG00000010474	msi2b	98	94.667	ENSCATG00000040879	MSI2	96	95.000	Cercocebus_atys
ENSAMXG00000010474	msi2b	100	86.127	ENSCLAG00000014325	MSI2	100	86.127	Chinchilla_lanigera
ENSAMXG00000010474	msi2b	95	96.091	ENSCSAG00000005633	MSI2	100	90.854	Chlorocebus_sabaeus
ENSAMXG00000010474	msi2b	93	67.857	ENSCHOG00000008660	MSI2	83	90.196	Choloepus_hoffmanni
ENSAMXG00000010474	msi2b	97	96.552	ENSCPBG00000009942	MSI2	95	88.764	Chrysemys_picta_bellii
ENSAMXG00000010474	msi2b	88	53.431	ENSCING00000018579	-	97	53.394	Ciona_intestinalis
ENSAMXG00000010474	msi2b	90	54.515	ENSCSAVG00000010397	-	94	55.000	Ciona_savignyi
ENSAMXG00000010474	msi2b	98	94.667	ENSCANG00000036414	MSI2	96	95.000	Colobus_angolensis_palliatus
ENSAMXG00000010474	msi2b	95	95.779	ENSCGRG00001013330	Msi2	100	90.274	Cricetulus_griseus_chok1gshd
ENSAMXG00000010474	msi2b	97	89.759	ENSCGRG00000003141	Msi2	100	90.032	Cricetulus_griseus_crigri
ENSAMXG00000010474	msi2b	81	76.289	ENSCSEG00000013557	msi2a	79	84.615	Cynoglossus_semilaevis
ENSAMXG00000010474	msi2b	97	85.859	ENSCSEG00000003266	-	100	82.716	Cynoglossus_semilaevis
ENSAMXG00000010474	msi2b	55	73.620	ENSCSEG00000013549	msi2a	100	75.543	Cynoglossus_semilaevis
ENSAMXG00000010474	msi2b	100	93.041	ENSCVAG00000017075	msi2a	100	96.296	Cyprinodon_variegatus
ENSAMXG00000010474	msi2b	100	93.873	ENSDARG00000032614	msi2b	100	100.000	Danio_rerio
ENSAMXG00000010474	msi2b	100	90.464	ENSDARG00000033901	msi2a	100	90.464	Danio_rerio
ENSAMXG00000010474	msi2b	97	95.833	ENSDNOG00000014501	MSI2	100	95.833	Dasypus_novemcinctus
ENSAMXG00000010474	msi2b	55	99.115	ENSDORG00000028440	-	100	99.115	Dipodomys_ordii
ENSAMXG00000010474	msi2b	81	84.264	ENSDORG00000005394	Msi2	84	84.264	Dipodomys_ordii
ENSAMXG00000010474	msi2b	95	56.196	FBgn0260943	Rbp6	88	66.667	Drosophila_melanogaster
ENSAMXG00000010474	msi2b	73	74.342	ENSETEG00000012450	-	64	74.342	Echinops_telfairi
ENSAMXG00000010474	msi2b	93	64.537	ENSEBUG00000006732	msi2a	87	64.309	Eptatretus_burgeri
ENSAMXG00000010474	msi2b	100	92.977	ENSEASG00005002965	MSI2	97	94.931	Equus_asinus_asinus
ENSAMXG00000010474	msi2b	97	93.913	ENSECAG00000011435	MSI2	100	83.898	Equus_caballus
ENSAMXG00000010474	msi2b	86	80.632	ENSEEUG00000007810	MSI2	100	80.632	Erinaceus_europaeus
ENSAMXG00000010474	msi2b	100	95.385	ENSELUG00000001361	msi2b	100	93.165	Esox_lucius
ENSAMXG00000010474	msi2b	100	96.166	ENSELUG00000011747	msi2a	100	96.166	Esox_lucius
ENSAMXG00000010474	msi2b	53	81.538	ENSFCAG00000033787	-	82	77.564	Felis_catus
ENSAMXG00000010474	msi2b	95	96.091	ENSFCAG00000041686	MSI2	96	95.000	Felis_catus
ENSAMXG00000010474	msi2b	95	90.769	ENSFDAG00000016118	MSI2	100	90.769	Fukomys_damarensis
ENSAMXG00000010474	msi2b	100	93.930	ENSFHEG00000000084	msi2a	100	93.930	Fundulus_heteroclitus
ENSAMXG00000010474	msi2b	53	97.590	ENSGMOG00000007596	-	100	96.154	Gadus_morhua
ENSAMXG00000010474	msi2b	100	84.971	ENSGALG00000005567	MSI2	100	84.971	Gallus_gallus
ENSAMXG00000010474	msi2b	96	86.184	ENSGAFG00000006974	msi2a	90	96.026	Gambusia_affinis
ENSAMXG00000010474	msi2b	97	96.875	ENSGAGG00000016542	MSI2	100	86.842	Gopherus_agassizii
ENSAMXG00000010474	msi2b	97	94.667	ENSGGOG00000013182	MSI2	96	95.000	Gorilla_gorilla
ENSAMXG00000010474	msi2b	100	93.930	ENSHBUG00000020800	msi2a	100	95.885	Haplochromis_burtoni
ENSAMXG00000010474	msi2b	100	77.168	ENSHGLG00000012444	MSI2	100	77.168	Heterocephalus_glaber_female
ENSAMXG00000010474	msi2b	55	99.123	ENSHGLG00100004028	-	87	99.123	Heterocephalus_glaber_male
ENSAMXG00000010474	msi2b	78	85.990	ENSHGLG00100003744	MSI2	100	85.990	Heterocephalus_glaber_male
ENSAMXG00000010474	msi2b	94	96.396	ENSHCOG00000000266	msi2a	100	87.715	Hippocampus_comes
ENSAMXG00000010474	msi2b	91	89.048	ENSHCOG00000017241	-	98	70.896	Hippocampus_comes
ENSAMXG00000010474	msi2b	100	93.610	ENSIPUG00000021097	msi2a	100	97.119	Ictalurus_punctatus
ENSAMXG00000010474	msi2b	100	97.680	ENSIPUG00000003732	msi2b	100	97.680	Ictalurus_punctatus
ENSAMXG00000010474	msi2b	97	91.135	ENSSTOG00000007884	MSI2	99	91.135	Ictidomys_tridecemlineatus
ENSAMXG00000010474	msi2b	55	99.115	ENSJJAG00000009467	-	100	99.115	Jaculus_jaculus
ENSAMXG00000010474	msi2b	78	82.412	ENSJJAG00000006292	-	100	81.407	Jaculus_jaculus
ENSAMXG00000010474	msi2b	100	92.268	ENSKMAG00000009494	msi2a	100	92.268	Kryptolebias_marmoratus
ENSAMXG00000010474	msi2b	92	87.565	ENSLBEG00000026223	-	100	78.947	Labrus_bergylta
ENSAMXG00000010474	msi2b	100	94.569	ENSLBEG00000007061	msi2a	100	94.569	Labrus_bergylta
ENSAMXG00000010474	msi2b	61	91.089	ENSLACG00000016798	MSI2	98	95.604	Latimeria_chalumnae
ENSAMXG00000010474	msi2b	100	96.392	ENSLOCG00000004675	msi2b	100	96.392	Lepisosteus_oculatus
ENSAMXG00000010474	msi2b	98	94.667	ENSMFAG00000003775	MSI2	96	95.000	Macaca_fascicularis
ENSAMXG00000010474	msi2b	98	94.667	ENSMMUG00000002069	MSI2	96	95.000	Macaca_mulatta
ENSAMXG00000010474	msi2b	98	94.667	ENSMNEG00000045275	MSI2	96	95.000	Macaca_nemestrina
ENSAMXG00000010474	msi2b	98	94.667	ENSMLEG00000033888	MSI2	96	95.000	Mandrillus_leucophaeus
ENSAMXG00000010474	msi2b	100	92.332	ENSMAMG00000002488	-	99	95.364	Mastacembelus_armatus
ENSAMXG00000010474	msi2b	100	93.949	ENSMAMG00000010503	msi2a	100	96.296	Mastacembelus_armatus
ENSAMXG00000010474	msi2b	100	93.930	ENSMZEG00005007676	msi2a	100	95.885	Maylandia_zebra
ENSAMXG00000010474	msi2b	100	85.591	ENSMAUG00000003862	Msi2	100	85.591	Mesocricetus_auratus
ENSAMXG00000010474	msi2b	99	73.231	ENSMICG00000032913	-	89	86.000	Microcebus_murinus
ENSAMXG00000010474	msi2b	95	96.091	ENSMICG00000013598	-	96	95.000	Microcebus_murinus
ENSAMXG00000010474	msi2b	100	85.838	ENSMOCG00000005820	Msi2	100	85.838	Microtus_ochrogaster
ENSAMXG00000010474	msi2b	92	92.661	ENSMMOG00000008348	msi2a	90	95.620	Mola_mola
ENSAMXG00000010474	msi2b	78	85.507	ENSMODG00000014790	MSI2	100	85.507	Monodelphis_domestica
ENSAMXG00000010474	msi2b	100	95.425	ENSMALG00000000071	msi2a	100	96.296	Monopterus_albus
ENSAMXG00000010474	msi2b	95	96.091	MGP_CAROLIEiJ_G0016948	Msi2	100	99.115	Mus_caroli
ENSAMXG00000010474	msi2b	95	96.091	ENSMUSG00000069769	Msi2	100	99.115	Mus_musculus
ENSAMXG00000010474	msi2b	95	96.091	MGP_PahariEiJ_G0018079	Msi2	100	99.115	Mus_pahari
ENSAMXG00000010474	msi2b	95	96.091	MGP_SPRETEiJ_G0017795	Msi2	100	99.115	Mus_spretus
ENSAMXG00000010474	msi2b	100	94.753	ENSMPUG00000015377	MSI2	100	94.753	Mustela_putorius_furo
ENSAMXG00000010474	msi2b	100	94.136	ENSMLUG00000007865	MSI2	100	94.136	Myotis_lucifugus
ENSAMXG00000010474	msi2b	100	85.838	ENSNGAG00000017807	Msi2	100	85.838	Nannospalax_galili
ENSAMXG00000010474	msi2b	100	93.930	ENSNBRG00000014596	msi2a	100	93.930	Neolamprologus_brichardi
ENSAMXG00000010474	msi2b	98	94.667	ENSNLEG00000008059	MSI2	96	96.209	Nomascus_leucogenys
ENSAMXG00000010474	msi2b	75	86.184	ENSOPRG00000000872	-	64	86.184	Ochotona_princeps
ENSAMXG00000010474	msi2b	100	86.127	ENSODEG00000011974	MSI2	100	86.127	Octodon_degus
ENSAMXG00000010474	msi2b	56	96.923	ENSONIG00000001972	msi2a	84	96.026	Oreochromis_niloticus
ENSAMXG00000010474	msi2b	94	94.444	ENSOANG00000005667	MSI2	99	77.570	Ornithorhynchus_anatinus
ENSAMXG00000010474	msi2b	100	94.753	ENSOCUG00000010440	MSI2	100	94.753	Oryctolagus_cuniculus
ENSAMXG00000010474	msi2b	100	93.041	ENSORLG00000009671	msi2a	100	96.296	Oryzias_latipes
ENSAMXG00000010474	msi2b	97	95.142	ENSORLG00020021556	msi2a	100	96.296	Oryzias_latipes_hni
ENSAMXG00000010474	msi2b	100	93.041	ENSORLG00015004592	msi2a	100	96.296	Oryzias_latipes_hsok
ENSAMXG00000010474	msi2b	100	93.041	ENSOMEG00000000146	msi2a	100	96.296	Oryzias_melastigma
ENSAMXG00000010474	msi2b	95	91.558	ENSOGAG00000005621	MSI2	100	91.558	Otolemur_garnettii
ENSAMXG00000010474	msi2b	97	90.741	ENSPPAG00000037697	MSI2	96	95.000	Pan_paniscus
ENSAMXG00000010474	msi2b	95	96.091	ENSPPRG00000001848	MSI2	96	95.000	Panthera_pardus
ENSAMXG00000010474	msi2b	97	90.354	ENSPTIG00000021678	MSI2	96	90.354	Panthera_tigris_altaica
ENSAMXG00000010474	msi2b	79	75.833	ENSPTIG00000021873	-	93	76.050	Panthera_tigris_altaica
ENSAMXG00000010474	msi2b	97	94.667	ENSPTRG00000009437	MSI2	96	95.000	Pan_troglodytes
ENSAMXG00000010474	msi2b	98	94.667	ENSPANG00000022319	MSI2	96	95.000	Papio_anubis
ENSAMXG00000010474	msi2b	91	92.857	ENSPKIG00000007038	-	96	93.827	Paramormyrops_kingsleyae
ENSAMXG00000010474	msi2b	95	97.119	ENSPSIG00000008618	MSI2	100	88.670	Pelodiscus_sinensis
ENSAMXG00000010474	msi2b	100	93.930	ENSPMGG00000005888	msi2a	100	93.930	Periophthalmus_magnuspinnatus
ENSAMXG00000010474	msi2b	55	99.115	ENSPEMG00000021793	-	100	99.115	Peromyscus_maniculatus_bairdii
ENSAMXG00000010474	msi2b	97	89.490	ENSPCIG00000006063	MSI2	100	84.181	Phascolarctos_cinereus
ENSAMXG00000010474	msi2b	54	95.238	ENSPFOG00000019337	MSI2	92	94.286	Poecilia_formosa
ENSAMXG00000010474	msi2b	56	93.388	ENSPLAG00000000436	msi2a	76	92.958	Poecilia_latipinna
ENSAMXG00000010474	msi2b	56	91.406	ENSPMEG00000013247	msi2a	80	91.406	Poecilia_mexicana
ENSAMXG00000010474	msi2b	99	92.013	ENSPREG00000000881	msi2a	99	92.013	Poecilia_reticulata
ENSAMXG00000010474	msi2b	97	92.017	ENSPPYG00000008244	-	100	92.017	Pongo_abelii
ENSAMXG00000010474	msi2b	76	66.387	ENSPCAG00000010552	MSI2	100	66.387	Procavia_capensis
ENSAMXG00000010474	msi2b	61	95.918	ENSPCOG00000019195	-	100	95.918	Propithecus_coquereli
ENSAMXG00000010474	msi2b	97	88.055	ENSPVAG00000017053	MSI2	100	88.055	Pteropus_vampyrus
ENSAMXG00000010474	msi2b	100	93.930	ENSPNYG00000018393	msi2a	100	95.885	Pundamilia_nyererei
ENSAMXG00000010474	msi2b	100	99.229	ENSPNAG00000000844	msi2b	100	99.229	Pygocentrus_nattereri
ENSAMXG00000010474	msi2b	100	96.497	ENSPNAG00000014957	msi2a	100	96.497	Pygocentrus_nattereri
ENSAMXG00000010474	msi2b	97	95.683	ENSRNOG00000025338	Msi2	100	95.683	Rattus_norvegicus
ENSAMXG00000010474	msi2b	61	95.420	ENSRROG00000034421	-	100	95.420	Rhinopithecus_roxellana
ENSAMXG00000010474	msi2b	97	95.089	ENSSBOG00000026425	MSI2	96	95.000	Saimiri_boliviensis_boliviensis
ENSAMXG00000010474	msi2b	97	90.123	ENSSHAG00000008672	MSI2	100	90.123	Sarcophilus_harrisii
ENSAMXG00000010474	msi2b	95	91.234	ENSSFOG00015021687	-	94	94.144	Scleropages_formosus
ENSAMXG00000010474	msi2b	95	85.537	ENSSFOG00015012168	msi2b	100	72.794	Scleropages_formosus
ENSAMXG00000010474	msi2b	100	94.249	ENSSMAG00000018484	msi2a	100	96.296	Scophthalmus_maximus
ENSAMXG00000010474	msi2b	97	89.542	ENSSDUG00000021968	-	99	94.702	Seriola_dumerili
ENSAMXG00000010474	msi2b	100	94.569	ENSSDUG00000014507	msi2a	100	96.296	Seriola_dumerili
ENSAMXG00000010474	msi2b	100	94.569	ENSSLDG00000017172	msi2a	100	96.296	Seriola_lalandi_dorsalis
ENSAMXG00000010474	msi2b	58	94.891	ENSSPUG00000000913	-	94	95.570	Sphenodon_punctatus
ENSAMXG00000010474	msi2b	94	96.847	ENSSPAG00000017793	msi2a	100	96.296	Stegastes_partitus
ENSAMXG00000010474	msi2b	95	96.091	ENSSSCG00000038505	MSI2	100	96.708	Sus_scrofa
ENSAMXG00000010474	msi2b	78	85.990	ENSTGUG00000008452	MSI2	100	85.990	Taeniopygia_guttata
ENSAMXG00000010474	msi2b	97	93.878	ENSTRUG00000021248	msi2a	100	87.463	Takifugu_rubripes
ENSAMXG00000010474	msi2b	73	81.818	ENSTBEG00000001241	MSI2	73	80.165	Tupaia_belangeri
ENSAMXG00000010474	msi2b	97	86.975	ENSTTRG00000002189	MSI2	91	97.368	Tursiops_truncatus
ENSAMXG00000010474	msi2b	100	94.753	ENSUAMG00000000700	MSI2	100	94.753	Ursus_americanus
ENSAMXG00000010474	msi2b	96	94.553	ENSUMAG00000000505	MSI2	100	97.409	Ursus_maritimus
ENSAMXG00000010474	msi2b	60	84.066	ENSVPAG00000006837	-	62	84.066	Vicugna_pacos
ENSAMXG00000010474	msi2b	100	95.876	ENSVVUG00000011783	MSI2	100	95.890	Vulpes_vulpes
ENSAMXG00000010474	msi2b	100	90.722	ENSXCOG00000006113	msi2a	100	90.722	Xiphophorus_couchianus
ENSAMXG00000010474	msi2b	96	93.980	ENSXMAG00000000608	msi2a	100	96.296	Xiphophorus_maculatus