EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000010665 (Gene tree)
Gene ID: 103046861
Gene Symbol: ppargc1b
Alias: fb55c08|perc1b|sb:cb520|si:bz1d10.4|wu:fb55c08
Full Name: peroxisome proliferator-activated receptor gamma coactivator 1-beta
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 67309 bases
Position: chr24:38401963-38469271
Accession: 103046861
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000053845	RRM_1	PF00076.22	9.6e-06	1	1
ENSAMXP00000010955	RRM_1	PF00076.22	9.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000010956	-	2535	XM_022684065	ENSAMXP00000010955	844 (aa)	XP_022539786	W5KTP3
ENSAMXT00000050897	-	3504	XM_007246412	ENSAMXP00000053845	842 (aa)	XP_007246474	UPI000BBDA9F7

Gene Model

Click here to download ENSAMXG00000010665's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000010665's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000010665	ppargc1b	75	46.667	ENSAPLG00000009977	PPARGC1B	84	35.897	Anas_platyrhynchos
ENSAMXG00000010665	ppargc1b	91	36.145	ENSACAG00000015737	PPARGC1B	82	40.000	Anolis_carolinensis
ENSAMXG00000010665	ppargc1b	77	46.825	ENSCAFG00000018275	PPARGC1B	68	46.825	Canis_familiaris
ENSAMXG00000010665	ppargc1b	85	47.619	ENSCHIG00000004409	PPARGC1B	68	47.619	Capra_hircus
ENSAMXG00000010665	ppargc1b	90	38.971	ENSTSYG00000034354	PPARGC1B	54	41.379	Carlito_syrichta
ENSAMXG00000010665	ppargc1b	74	46.032	ENSCAPG00000008859	PPARGC1B	58	46.032	Cavia_aperea
ENSAMXG00000010665	ppargc1b	76	45.312	ENSCLAG00000015452	PPARGC1B	69	44.531	Chinchilla_lanigera
ENSAMXG00000010665	ppargc1b	91	40.244	ENSCPBG00000007891	PPARGC1B	80	54.545	Chrysemys_picta_bellii
ENSAMXG00000010665	ppargc1b	70	46.789	ENSCGRG00001017949	Ppargc1b	57	46.789	Cricetulus_griseus_chok1gshd
ENSAMXG00000010665	ppargc1b	70	46.789	ENSCGRG00000008387	Ppargc1b	59	46.789	Cricetulus_griseus_crigri
ENSAMXG00000010665	ppargc1b	51	40.909	ENSDARG00000067829	ppargc1a	53	40.909	Danio_rerio
ENSAMXG00000010665	ppargc1b	93	96.296	ENSDARG00000101569	ppargc1b	100	96.296	Danio_rerio
ENSAMXG00000010665	ppargc1b	55	30.879	ENSDNOG00000005985	PPARGC1B	82	33.687	Dasypus_novemcinctus
ENSAMXG00000010665	ppargc1b	83	45.238	ENSECAG00000019769	PPARGC1B	56	45.238	Equus_caballus
ENSAMXG00000010665	ppargc1b	100	59.424	ENSELUG00000014929	ppargc1b	100	58.830	Esox_lucius
ENSAMXG00000010665	ppargc1b	87	38.889	ENSFALG00000008858	PPARGC1B	83	39.490	Ficedula_albicollis
ENSAMXG00000010665	ppargc1b	79	42.636	ENSFDAG00000008719	PPARGC1B	59	42.636	Fukomys_damarensis
ENSAMXG00000010665	ppargc1b	81	55.952	ENSGAGG00000012870	PPARGC1B	83	53.333	Gopherus_agassizii
ENSAMXG00000010665	ppargc1b	81	44.615	ENSHGLG00000005967	PPARGC1B	63	44.615	Heterocephalus_glaber_female
ENSAMXG00000010665	ppargc1b	100	69.630	ENSIPUG00000001584	Ppargc1b	100	69.977	Ictalurus_punctatus
ENSAMXG00000010665	ppargc1b	77	45.238	ENSSTOG00000024758	PPARGC1B	60	42.857	Ictidomys_tridecemlineatus
ENSAMXG00000010665	ppargc1b	74	41.935	ENSLACG00000011232	PPARGC1B	61	41.935	Latimeria_chalumnae
ENSAMXG00000010665	ppargc1b	100	53.933	ENSLOCG00000012195	ppargc1b	100	53.924	Lepisosteus_oculatus
ENSAMXG00000010665	ppargc1b	87	36.709	ENSLAFG00000012339	PPARGC1B	56	37.255	Loxodonta_africana
ENSAMXG00000010665	ppargc1b	56	54.444	ENSMGAG00000003134	PPARGC1B	59	54.545	Meleagris_gallopavo
ENSAMXG00000010665	ppargc1b	76	45.600	ENSMICG00000002702	PPARGC1B	69	54.167	Microcebus_murinus
ENSAMXG00000010665	ppargc1b	74	42.105	ENSMODG00000009891	PPARGC1B	89	37.662	Monodelphis_domestica
ENSAMXG00000010665	ppargc1b	78	41.176	ENSMUSG00000033871	Ppargc1b	63	41.176	Mus_musculus
ENSAMXG00000010665	ppargc1b	75	46.154	ENSNGAG00000016998	Ppargc1b	62	46.154	Nannospalax_galili
ENSAMXG00000010665	ppargc1b	87	35.443	ENSOANG00000009368	PPARGC1B	80	53.409	Ornithorhynchus_anatinus
ENSAMXG00000010665	ppargc1b	55	36.994	ENSOCUG00000014668	PPARGC1A	50	45.238	Oryctolagus_cuniculus
ENSAMXG00000010665	ppargc1b	72	36.709	ENSOARG00000005658	PPARGC1B	50	37.255	Ovis_aries
ENSAMXG00000010665	ppargc1b	50	39.535	ENSPSIG00000011790	PPARGC1A	57	39.535	Pelodiscus_sinensis
ENSAMXG00000010665	ppargc1b	91	39.241	ENSPSIG00000008358	PPARGC1B	83	39.216	Pelodiscus_sinensis
ENSAMXG00000010665	ppargc1b	75	44.954	ENSPEMG00000018822	Ppargc1b	62	44.037	Peromyscus_maniculatus_bairdii
ENSAMXG00000010665	ppargc1b	68	36.364	ENSPCIG00000020102	PPARGC1B	63	36.875	Phascolarctos_cinereus
ENSAMXG00000010665	ppargc1b	77	45.238	ENSPCOG00000024059	PPARGC1B	69	54.167	Propithecus_coquereli
ENSAMXG00000010665	ppargc1b	100	85.765	ENSPNAG00000023871	ppargc1b	100	85.409	Pygocentrus_nattereri
ENSAMXG00000010665	ppargc1b	90	36.196	ENSSHAG00000016400	PPARGC1B	74	38.660	Sarcophilus_harrisii
ENSAMXG00000010665	ppargc1b	87	61.372	ENSSFOG00015003048	ppargc1b	93	70.192	Scleropages_formosus
ENSAMXG00000010665	ppargc1b	86	43.902	ENSSPUG00000019271	PPARGC1B	87	40.268	Sphenodon_punctatus
ENSAMXG00000010665	ppargc1b	87	42.405	ENSTGUG00000000232	PPARGC1B	83	43.137	Taeniopygia_guttata
ENSAMXG00000010665	ppargc1b	77	46.825	ENSVVUG00000014358	PPARGC1B	68	46.825	Vulpes_vulpes
ENSAMXG00000010665	ppargc1b	75	42.478	ENSXETG00000012711	ppargc1b	81	38.235	Xenopus_tropicalis