EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000010843 (Gene tree)
Gene ID: -
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 13124 bases
Position: chrAPWO02000054.1:86484-99607
Accession: 103031118
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000011287	ResIII	PF04851.15	2.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000011286	-	3891	XM_022665571	ENSAMXP00000011287	1296 (aa)	XP_022521292	W5KUM5

Gene Model

Click here to download ENSAMXG00000010843's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000010843's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000010843	chd1	91	83.502	ENSG00000153922	CHD1	71	82.319	Homo_sapiens
ENSAMXG00000010843	chd1	87	89.302	ENSAPOG00000005764	chd1	96	89.302	Acanthochromis_polyacanthus
ENSAMXG00000010843	chd1	95	84.407	ENSAOCG00000023105	chd1	79	84.622	Amphiprion_ocellaris
ENSAMXG00000010843	chd1	95	85.851	ENSAPEG00000013544	chd1	79	86.067	Amphiprion_percula
ENSAMXG00000010843	chd1	91	83.502	ENSCATG00000032035	CHD1	72	82.319	Cercocebus_atys
ENSAMXG00000010843	chd1	91	83.502	ENSCSAG00000015339	CHD1	71	82.319	Chlorocebus_sabaeus
ENSAMXG00000010843	chd1	65	80.332	ENSCPBG00000015831	CHD1	85	79.287	Chrysemys_picta_bellii
ENSAMXG00000010843	chd1	91	81.161	ENSCANG00000036916	CHD1	71	80.181	Colobus_angolensis_palliatus
ENSAMXG00000010843	chd1	91	83.516	ENSCGRG00001023943	Chd1	72	81.392	Cricetulus_griseus_chok1gshd
ENSAMXG00000010843	chd1	91	83.516	ENSCGRG00000008652	Chd1	72	81.392	Cricetulus_griseus_crigri
ENSAMXG00000010843	chd1	94	83.775	ENSCSEG00000009553	chd1	79	84.016	Cynoglossus_semilaevis
ENSAMXG00000010843	chd1	91	83.782	ENSEASG00005016110	CHD1	87	82.445	Equus_asinus_asinus
ENSAMXG00000010843	chd1	93	88.871	ENSELUG00000017677	chd1	74	88.871	Esox_lucius
ENSAMXG00000010843	chd1	93	86.198	ENSFHEG00000021164	chd1	88	86.198	Fundulus_heteroclitus
ENSAMXG00000010843	chd1	93	87.834	ENSGMOG00000001537	chd1	71	87.769	Gadus_morhua
ENSAMXG00000010843	chd1	98	79.001	ENSGALG00000031327	-	74	82.299	Gallus_gallus
ENSAMXG00000010843	chd1	88	85.779	ENSGAFG00000019880	chd1	73	85.779	Gambusia_affinis
ENSAMXG00000010843	chd1	91	79.058	ENSGGOG00000011463	CHD1	71	77.541	Gorilla_gorilla
ENSAMXG00000010843	chd1	96	85.208	ENSHCOG00000014222	chd1	79	85.422	Hippocampus_comes
ENSAMXG00000010843	chd1	95	91.195	ENSIPUG00000001369	chd1	78	91.276	Ictalurus_punctatus
ENSAMXG00000010843	chd1	67	82.339	ENSLAFG00000023183	CHD1	81	82.339	Loxodonta_africana
ENSAMXG00000010843	chd1	91	83.502	ENSMFAG00000031226	CHD1	71	82.319	Macaca_fascicularis
ENSAMXG00000010843	chd1	91	83.347	ENSMMUG00000014090	CHD1	85	82.339	Macaca_mulatta
ENSAMXG00000010843	chd1	91	83.502	ENSMNEG00000045073	CHD1	71	82.319	Macaca_nemestrina
ENSAMXG00000010843	chd1	91	77.104	ENSMLEG00000041096	CHD1	70	77.549	Mandrillus_leucophaeus
ENSAMXG00000010843	chd1	95	85.060	ENSMZEG00005010957	chd1	94	86.185	Maylandia_zebra
ENSAMXG00000010843	chd1	88	83.798	ENSMOCG00000019121	Chd1	70	82.935	Microtus_ochrogaster
ENSAMXG00000010843	chd1	59	81.218	ENSMODG00000019266	-	92	86.733	Monodelphis_domestica
ENSAMXG00000010843	chd1	93	87.264	ENSMALG00000013317	chd1	85	87.264	Monopterus_albus
ENSAMXG00000010843	chd1	91	83.684	MGP_CAROLIEiJ_G0021099	Chd1	81	84.422	Mus_caroli
ENSAMXG00000010843	chd1	91	83.600	ENSMUSG00000023852	Chd1	81	84.422	Mus_musculus
ENSAMXG00000010843	chd1	91	83.670	MGP_PahariEiJ_G0023414	Chd1	81	84.211	Mus_pahari
ENSAMXG00000010843	chd1	89	89.121	ENSNBRG00000006860	chd1	77	86.486	Neolamprologus_brichardi
ENSAMXG00000010843	chd1	91	83.502	ENSNLEG00000014493	CHD1	71	82.319	Nomascus_leucogenys
ENSAMXG00000010843	chd1	91	84.188	ENSOANG00000004891	CHD1	75	84.430	Ornithorhynchus_anatinus
ENSAMXG00000010843	chd1	71	82.807	ENSORLG00015016725	chd1	82	86.009	Oryzias_latipes_hsok
ENSAMXG00000010843	chd1	91	82.176	ENSPPAG00000043367	CHD1	72	80.619	Pan_paniscus
ENSAMXG00000010843	chd1	91	83.502	ENSPTRG00000017103	CHD1	71	82.319	Pan_troglodytes
ENSAMXG00000010843	chd1	91	83.502	ENSPANG00000006387	CHD1	71	82.319	Papio_anubis
ENSAMXG00000010843	chd1	93	81.240	ENSPKIG00000024719	chd1	73	81.074	Paramormyrops_kingsleyae
ENSAMXG00000010843	chd1	92	88.329	ENSPMGG00000005785	chd1	91	87.977	Periophthalmus_magnuspinnatus
ENSAMXG00000010843	chd1	91	83.516	ENSPEMG00000015939	Chd1	71	82.756	Peromyscus_maniculatus_bairdii
ENSAMXG00000010843	chd1	57	84.480	ENSPLAG00000006473	-	72	88.269	Poecilia_latipinna
ENSAMXG00000010843	chd1	93	85.149	ENSPREG00000004209	chd1	73	85.149	Poecilia_reticulata
ENSAMXG00000010843	chd1	91	83.684	ENSRNOG00000014434	Chd1	85	82.852	Rattus_norvegicus
ENSAMXG00000010843	chd1	89	84.201	ENSRBIG00000044325	CHD1	71	83.036	Rhinopithecus_bieti
ENSAMXG00000010843	chd1	91	83.502	ENSRROG00000001726	CHD1	72	82.387	Rhinopithecus_roxellana
ENSAMXG00000010843	chd1	95	84.603	ENSSFOG00015007161	chd1	94	84.585	Scleropages_formosus
ENSAMXG00000010843	chd1	92	88.650	ENSSDUG00000018314	chd1	84	88.650	Seriola_dumerili
ENSAMXG00000010843	chd1	66	89.791	ENSSLDG00000017244	chd1	86	89.791	Seriola_lalandi_dorsalis
ENSAMXG00000010843	chd1	93	88.687	ENSSPAG00000007024	chd1	86	88.852	Stegastes_partitus
ENSAMXG00000010843	chd1	91	84.343	ENSSSCG00000014177	CHD1	84	82.010	Sus_scrofa
ENSAMXG00000010843	chd1	92	85.309	ENSTRUG00000010282	chd1	71	85.619	Takifugu_rubripes
ENSAMXG00000010843	chd1	82	87.734	ENSTNIG00000007101	chd1	84	87.258	Tetraodon_nigroviridis
ENSAMXG00000010843	chd1	98	77.778	ENSXCOG00000017184	chd1	73	81.728	Xiphophorus_couchianus
ENSAMXG00000010843	chd1	90	87.016	ENSXMAG00000014538	chd1	85	87.016	Xiphophorus_maculatus