EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000010910 (Gene tree)
Gene ID: 103021863
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 18939 bases
Position: chr19:17756252-17775190
Accession: 103021863
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000011199	Rif1_N	PF12231.8	1.2e-80	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000011199	-	7528	XM_007253478	ENSAMXP00000011199	2429 (aa)	XP_007253540	W5KUD7

Gene Model

Click here to download ENSAMXG00000010910's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000010910's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000010910	rif1	52	51.049	ENSG00000080345	RIF1	97	55.396	Homo_sapiens
ENSAMXG00000010910	rif1	61	57.609	ENSAPOG00000011073	rif1	59	57.483	Acanthochromis_polyacanthus
ENSAMXG00000010910	rif1	87	57.328	ENSACIG00000017765	rif1	92	57.328	Amphilophus_citrinellus
ENSAMXG00000010910	rif1	62	56.802	ENSAOCG00000017231	rif1	61	56.536	Amphiprion_ocellaris
ENSAMXG00000010910	rif1	74	66.625	ENSAPEG00000013228	rif1	78	66.538	Amphiprion_percula
ENSAMXG00000010910	rif1	75	54.068	ENSATEG00000022887	rif1	99	53.790	Anabas_testudineus
ENSAMXG00000010910	rif1	84	52.726	ENSAPLG00000007092	RIF1	93	53.046	Anas_platyrhynchos
ENSAMXG00000010910	rif1	51	51.170	ENSANAG00000024840	RIF1	64	45.266	Aotus_nancymaae
ENSAMXG00000010910	rif1	59	52.312	ENSBTAG00000021020	RIF1	77	44.861	Bos_taurus
ENSAMXG00000010910	rif1	52	50.781	ENSCAFG00020016401	RIF1	51	51.062	Canis_lupus_dingo
ENSAMXG00000010910	rif1	51	51.837	ENSCHIG00000020327	RIF1	57	47.166	Capra_hircus
ENSAMXG00000010910	rif1	69	48.868	ENSTSYG00000008861	RIF1	67	49.055	Carlito_syrichta
ENSAMXG00000010910	rif1	60	39.444	ENSCAPG00000008957	RIF1	72	39.352	Cavia_aperea
ENSAMXG00000010910	rif1	52	49.805	ENSCCAG00000024760	RIF1	63	43.884	Cebus_capucinus
ENSAMXG00000010910	rif1	52	51.944	ENSCSAG00000016089	RIF1	59	47.838	Chlorocebus_sabaeus
ENSAMXG00000010910	rif1	68	51.775	ENSCPBG00000025885	RIF1	77	52.367	Chrysemys_picta_bellii
ENSAMXG00000010910	rif1	52	51.975	ENSCANG00000028962	RIF1	61	47.938	Colobus_angolensis_palliatus
ENSAMXG00000010910	rif1	65	48.569	ENSCGRG00001024589	Rif1	65	49.094	Cricetulus_griseus_chok1gshd
ENSAMXG00000010910	rif1	50	50.316	ENSCGRG00000010713	Rif1	51	50.999	Cricetulus_griseus_crigri
ENSAMXG00000010910	rif1	76	56.209	ENSCVAG00000022479	rif1	78	56.064	Cyprinodon_variegatus
ENSAMXG00000010910	rif1	99	56.543	ENSDARG00000062650	rif1	99	56.543	Danio_rerio
ENSAMXG00000010910	rif1	54	48.667	ENSDNOG00000011194	RIF1	61	44.501	Dasypus_novemcinctus
ENSAMXG00000010910	rif1	67	46.334	ENSETEG00000012421	RIF1	66	46.105	Echinops_telfairi
ENSAMXG00000010910	rif1	62	65.823	ENSEASG00005023434	RIF1	65	65.823	Equus_asinus_asinus
ENSAMXG00000010910	rif1	65	50.448	ENSECAG00000012679	RIF1	50	51.386	Equus_caballus
ENSAMXG00000010910	rif1	68	67.514	ENSELUG00000006826	rif1	69	67.514	Esox_lucius
ENSAMXG00000010910	rif1	52	51.446	ENSFCAG00000029742	RIF1	51	51.537	Felis_catus
ENSAMXG00000010910	rif1	58	53.290	ENSFALG00000013874	RIF1	91	53.475	Ficedula_albicollis
ENSAMXG00000010910	rif1	66	51.675	ENSFDAG00000006538	RIF1	78	51.675	Fukomys_damarensis
ENSAMXG00000010910	rif1	76	60.857	ENSFHEG00000013721	rif1	78	60.857	Fundulus_heteroclitus
ENSAMXG00000010910	rif1	61	64.964	ENSGMOG00000003517	rif1	93	64.964	Gadus_morhua
ENSAMXG00000010910	rif1	89	51.728	ENSGAFG00000017196	rif1	98	51.839	Gambusia_affinis
ENSAMXG00000010910	rif1	88	50.446	ENSGAGG00000012595	RIF1	90	50.781	Gopherus_agassizii
ENSAMXG00000010910	rif1	71	75.410	ENSHBUG00000007125	rif1	66	58.711	Haplochromis_burtoni
ENSAMXG00000010910	rif1	59	54.545	ENSHGLG00100009807	RIF1	67	51.820	Heterocephalus_glaber_male
ENSAMXG00000010910	rif1	76	58.442	ENSHCOG00000015943	rif1	74	58.442	Hippocampus_comes
ENSAMXG00000010910	rif1	99	65.986	ENSIPUG00000021703	rif1	99	66.253	Ictalurus_punctatus
ENSAMXG00000010910	rif1	68	52.829	ENSSTOG00000020712	RIF1	73	48.293	Ictidomys_tridecemlineatus
ENSAMXG00000010910	rif1	76	56.410	ENSKMAG00000002852	rif1	78	56.695	Kryptolebias_marmoratus
ENSAMXG00000010910	rif1	75	63.205	ENSLBEG00000023196	rif1	69	63.205	Labrus_bergylta
ENSAMXG00000010910	rif1	86	55.730	ENSLACG00000005425	RIF1	99	49.677	Latimeria_chalumnae
ENSAMXG00000010910	rif1	99	51.455	ENSLOCG00000002657	rif1	100	51.188	Lepisosteus_oculatus
ENSAMXG00000010910	rif1	52	50.157	ENSLAFG00000009796	RIF1	51	49.960	Loxodonta_africana
ENSAMXG00000010910	rif1	78	59.343	ENSMAMG00000001745	rif1	65	60.601	Mastacembelus_armatus
ENSAMXG00000010910	rif1	74	63.897	ENSMZEG00005020920	rif1	88	63.897	Maylandia_zebra
ENSAMXG00000010910	rif1	75	54.119	ENSMGAG00000012732	RIF1	80	54.119	Meleagris_gallopavo
ENSAMXG00000010910	rif1	52	51.270	ENSMICG00000046127	RIF1	51	51.330	Microcebus_murinus
ENSAMXG00000010910	rif1	65	50.195	ENSMOCG00000009381	Rif1	65	50.119	Microtus_ochrogaster
ENSAMXG00000010910	rif1	85	55.469	ENSMMOG00000006519	rif1	85	55.469	Mola_mola
ENSAMXG00000010910	rif1	51	52.013	ENSMODG00000003703	RIF1	64	45.460	Monodelphis_domestica
ENSAMXG00000010910	rif1	76	64.157	ENSMALG00000016759	rif1	89	64.157	Monopterus_albus
ENSAMXG00000010910	rif1	65	50.737	MGP_CAROLIEiJ_G0023555	Rif1	52	50.626	Mus_caroli
ENSAMXG00000010910	rif1	52	50.933	ENSMUSG00000036202	Rif1	51	51.104	Mus_musculus
ENSAMXG00000010910	rif1	68	49.049	MGP_PahariEiJ_G0025006	Rif1	74	45.348	Mus_pahari
ENSAMXG00000010910	rif1	52	51.368	MGP_SPRETEiJ_G0024476	Rif1	51	51.546	Mus_spretus
ENSAMXG00000010910	rif1	51	51.705	ENSMPUG00000000371	RIF1	63	45.575	Mustela_putorius_furo
ENSAMXG00000010910	rif1	75	66.967	ENSNBRG00000014257	rif1	87	66.967	Neolamprologus_brichardi
ENSAMXG00000010910	rif1	52	50.576	ENSNLEG00000010955	RIF1	60	46.909	Nomascus_leucogenys
ENSAMXG00000010910	rif1	65	48.960	ENSODEG00000003950	RIF1	65	49.440	Octodon_degus
ENSAMXG00000010910	rif1	63	64.583	ENSONIG00000013657	rif1	70	58.739	Oreochromis_niloticus
ENSAMXG00000010910	rif1	65	55.744	ENSOANG00000006078	-	69	55.744	Ornithorhynchus_anatinus
ENSAMXG00000010910	rif1	86	54.726	ENSORLG00020001302	rif1	92	54.591	Oryzias_latipes_hni
ENSAMXG00000010910	rif1	73	57.441	ENSORLG00015000009	rif1	74	55.547	Oryzias_latipes_hsok
ENSAMXG00000010910	rif1	70	60.938	ENSOMEG00000021513	rif1	72	60.938	Oryzias_melastigma
ENSAMXG00000010910	rif1	51	52.800	ENSOARG00000008930	RIF1	57	48.283	Ovis_aries
ENSAMXG00000010910	rif1	52	50.973	ENSPPAG00000023754	RIF1	63	45.707	Pan_paniscus
ENSAMXG00000010910	rif1	52	51.368	ENSPPRG00000003618	RIF1	51	51.456	Panthera_pardus
ENSAMXG00000010910	rif1	52	51.368	ENSPTIG00000020652	RIF1	50	51.456	Panthera_tigris_altaica
ENSAMXG00000010910	rif1	52	51.051	ENSPTRG00000012534	RIF1	63	45.833	Pan_troglodytes
ENSAMXG00000010910	rif1	52	51.671	ENSPANG00000008525	RIF1	59	47.404	Papio_anubis
ENSAMXG00000010910	rif1	99	51.985	ENSPKIG00000004267	rif1	99	51.985	Paramormyrops_kingsleyae
ENSAMXG00000010910	rif1	70	62.893	ENSPMGG00000016141	rif1	89	55.004	Periophthalmus_magnuspinnatus
ENSAMXG00000010910	rif1	64	52.157	ENSPCIG00000009185	RIF1	52	51.978	Phascolarctos_cinereus
ENSAMXG00000010910	rif1	69	63.444	ENSPFOG00000000554	-	91	53.043	Poecilia_formosa
ENSAMXG00000010910	rif1	76	61.850	ENSPFOG00000017804	rif1	90	54.282	Poecilia_formosa
ENSAMXG00000010910	rif1	80	63.063	ENSPLAG00000017945	rif1	98	53.114	Poecilia_latipinna
ENSAMXG00000010910	rif1	66	61.671	ENSPMEG00000006897	-	77	60.845	Poecilia_mexicana
ENSAMXG00000010910	rif1	80	55.632	ENSPREG00000018052	rif1	91	54.845	Poecilia_reticulata
ENSAMXG00000010910	rif1	52	51.052	ENSPPYG00000012846	RIF1	63	45.523	Pongo_abelii
ENSAMXG00000010910	rif1	52	50.962	ENSPCOG00000027888	RIF1	64	45.352	Propithecus_coquereli
ENSAMXG00000010910	rif1	76	64.000	ENSPNYG00000012940	rif1	88	64.000	Pundamilia_nyererei
ENSAMXG00000010910	rif1	100	71.837	ENSPNAG00000016685	rif1	100	71.837	Pygocentrus_nattereri
ENSAMXG00000010910	rif1	65	49.761	ENSRNOG00000054901	Rif1	74	47.740	Rattus_norvegicus
ENSAMXG00000010910	rif1	51	51.692	ENSRBIG00000003704	RIF1	63	45.736	Rhinopithecus_bieti
ENSAMXG00000010910	rif1	52	51.748	ENSRROG00000028206	RIF1	64	45.438	Rhinopithecus_roxellana
ENSAMXG00000010910	rif1	63	51.237	ENSSHAG00000018552	RIF1	63	51.047	Sarcophilus_harrisii
ENSAMXG00000010910	rif1	99	57.316	ENSSFOG00015021539	rif1	99	58.616	Scleropages_formosus
ENSAMXG00000010910	rif1	79	67.164	ENSSMAG00000011704	rif1	74	67.164	Scophthalmus_maximus
ENSAMXG00000010910	rif1	77	62.148	ENSSDUG00000015632	rif1	88	63.265	Seriola_dumerili
ENSAMXG00000010910	rif1	62	58.366	ENSSLDG00000019531	rif1	72	52.652	Seriola_lalandi_dorsalis
ENSAMXG00000010910	rif1	69	51.384	ENSSPUG00000003062	RIF1	90	44.125	Sphenodon_punctatus
ENSAMXG00000010910	rif1	64	64.950	ENSSPAG00000018359	rif1	98	64.330	Stegastes_partitus
ENSAMXG00000010910	rif1	52	51.373	ENSSSCG00000016395	RIF1	51	51.266	Sus_scrofa
ENSAMXG00000010910	rif1	76	58.073	ENSTRUG00000015808	rif1	90	58.073	Takifugu_rubripes
ENSAMXG00000010910	rif1	58	54.386	ENSTBEG00000016082	RIF1	57	54.386	Tupaia_belangeri
ENSAMXG00000010910	rif1	52	50.773	ENSTTRG00000011190	RIF1	51	50.663	Tursiops_truncatus
ENSAMXG00000010910	rif1	58	46.093	ENSUAMG00000026385	RIF1	61	46.093	Ursus_americanus
ENSAMXG00000010910	rif1	52	51.056	ENSUMAG00000000337	RIF1	51	50.868	Ursus_maritimus
ENSAMXG00000010910	rif1	52	50.352	ENSVPAG00000002162	RIF1	50	50.276	Vicugna_pacos
ENSAMXG00000010910	rif1	65	50.703	ENSVVUG00000011293	RIF1	64	50.789	Vulpes_vulpes
ENSAMXG00000010910	rif1	69	53.116	ENSXETG00000004530	rif1	72	54.006	Xenopus_tropicalis
ENSAMXG00000010910	rif1	76	52.258	ENSXMAG00000000506	rif1	86	52.097	Xiphophorus_maculatus