EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000010971 (Gene tree)
Gene ID: 103029524
Gene Symbol: swt1
Alias: si:dkeyp-11g8.2|si:dkeyp-11g8.4|wu:fb81g09
Full Name: SWT1%2C RNA endoribonuclease homolog
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 47324 bases
Position: chr3:67533773-67581096
Accession: 103029524
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000043960	PIN_4	PF13638.6	6.5e-28	1	1
ENSAMXP00000034469	PIN_4	PF13638.6	6.5e-28	1	1
ENSAMXP00000011268	PIN_4	PF13638.6	6.8e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000056923	-	6466	XM_022665227	ENSAMXP00000043960	950 (aa)	XP_022520948	UPI000BBD84F0
ENSAMXT00000051986	-	6475	-	ENSAMXP00000034469	953 (aa)	-	-
ENSAMXT00000011268	-	6532	XM_022665212	ENSAMXP00000011268	972 (aa)	XP_022520933	W5KUK6

Gene Model

Click here to download ENSAMXG00000010971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000010971's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000010971	swt1	59	38.316	ENSG00000116668	SWT1	63	38.316	Homo_sapiens
ENSAMXG00000010971	swt1	58	46.678	ENSAPOG00000014897	-	60	47.359	Acanthochromis_polyacanthus
ENSAMXG00000010971	swt1	58	40.728	ENSAMEG00000013585	SWT1	62	40.728	Ailuropoda_melanoleuca
ENSAMXG00000010971	swt1	58	46.758	ENSAOCG00000013932	swt1	60	47.099	Amphiprion_ocellaris
ENSAMXG00000010971	swt1	58	47.099	ENSAPEG00000009613	-	60	47.440	Amphiprion_percula
ENSAMXG00000010971	swt1	62	46.189	ENSATEG00000018946	swt1	67	46.119	Anabas_testudineus
ENSAMXG00000010971	swt1	59	39.966	ENSAPLG00000008607	SWT1	79	39.829	Anas_platyrhynchos
ENSAMXG00000010971	swt1	56	38.517	ENSACAG00000002276	SWT1	63	38.336	Anolis_carolinensis
ENSAMXG00000010971	swt1	59	39.451	ENSANAG00000027068	SWT1	63	39.451	Aotus_nancymaae
ENSAMXG00000010971	swt1	56	46.303	ENSACLG00000009742	swt1	70	45.884	Astatotilapia_calliptera
ENSAMXG00000010971	swt1	58	38.947	ENSCJAG00000005544	SWT1	62	38.947	Callithrix_jacchus
ENSAMXG00000010971	swt1	60	38.758	ENSCAFG00000013543	SWT1	64	39.189	Canis_familiaris
ENSAMXG00000010971	swt1	60	38.758	ENSCAFG00020015648	SWT1	68	39.189	Canis_lupus_dingo
ENSAMXG00000010971	swt1	60	39.761	ENSCHIG00000023511	SWT1	96	39.826	Capra_hircus
ENSAMXG00000010971	swt1	58	38.850	ENSTSYG00000010470	SWT1	62	38.850	Carlito_syrichta
ENSAMXG00000010971	swt1	55	39.305	ENSCPOG00000014251	SWT1	67	39.305	Cavia_porcellus
ENSAMXG00000010971	swt1	59	39.175	ENSCCAG00000033926	SWT1	63	39.175	Cebus_capucinus
ENSAMXG00000010971	swt1	59	38.501	ENSCATG00000042210	SWT1	96	38.502	Cercocebus_atys
ENSAMXG00000010971	swt1	60	38.538	ENSCLAG00000013959	SWT1	65	39.065	Chinchilla_lanigera
ENSAMXG00000010971	swt1	59	38.462	ENSCSAG00000012895	SWT1	64	38.215	Chlorocebus_sabaeus
ENSAMXG00000010971	swt1	69	38.227	ENSCPBG00000015691	SWT1	69	39.490	Chrysemys_picta_bellii
ENSAMXG00000010971	swt1	59	38.488	ENSCANG00000032207	SWT1	96	38.489	Colobus_angolensis_palliatus
ENSAMXG00000010971	swt1	60	38.384	ENSCGRG00001022955	Swt1	68	38.384	Cricetulus_griseus_chok1gshd
ENSAMXG00000010971	swt1	60	38.384	ENSCGRG00000010224	Swt1	65	38.384	Cricetulus_griseus_crigri
ENSAMXG00000010971	swt1	57	47.069	ENSCSEG00000017352	swt1	96	39.500	Cynoglossus_semilaevis
ENSAMXG00000010971	swt1	80	49.239	ENSDARG00000094010	swt1	80	49.176	Danio_rerio
ENSAMXG00000010971	swt1	51	39.604	ENSDNOG00000005254	SWT1	60	39.604	Dasypus_novemcinctus
ENSAMXG00000010971	swt1	59	39.353	ENSDORG00000010531	Swt1	69	39.693	Dipodomys_ordii
ENSAMXG00000010971	swt1	59	37.500	ENSEASG00005005530	SWT1	68	37.500	Equus_asinus_asinus
ENSAMXG00000010971	swt1	59	37.500	ENSECAG00000012085	SWT1	67	37.500	Equus_caballus
ENSAMXG00000010971	swt1	78	45.499	ENSELUG00000020565	swt1	77	44.848	Esox_lucius
ENSAMXG00000010971	swt1	59	39.286	ENSFCAG00000011286	SWT1	64	39.286	Felis_catus
ENSAMXG00000010971	swt1	58	39.243	ENSFALG00000003206	SWT1	63	39.243	Ficedula_albicollis
ENSAMXG00000010971	swt1	89	30.826	ENSFDAG00000007569	SWT1	65	39.358	Fukomys_damarensis
ENSAMXG00000010971	swt1	56	38.698	ENSGALG00000034230	SWT1	63	38.919	Gallus_gallus
ENSAMXG00000010971	swt1	69	42.135	ENSGAFG00000007803	-	62	45.588	Gambusia_affinis
ENSAMXG00000010971	swt1	58	40.214	ENSGAGG00000025050	SWT1	97	40.214	Gopherus_agassizii
ENSAMXG00000010971	swt1	51	38.723	ENSGGOG00000041167	-	90	38.723	Gorilla_gorilla
ENSAMXG00000010971	swt1	59	46.701	ENSHBUG00000006188	swt1	70	46.218	Haplochromis_burtoni
ENSAMXG00000010971	swt1	60	38.591	ENSHGLG00000006542	SWT1	68	38.769	Heterocephalus_glaber_female
ENSAMXG00000010971	swt1	60	38.614	ENSHGLG00100014408	SWT1	65	39.597	Heterocephalus_glaber_male
ENSAMXG00000010971	swt1	83	54.963	ENSIPUG00000009113	-	88	52.247	Ictalurus_punctatus
ENSAMXG00000010971	swt1	57	40.000	ENSSTOG00000010356	SWT1	62	39.643	Ictidomys_tridecemlineatus
ENSAMXG00000010971	swt1	63	35.942	ENSJJAG00000015927	Swt1	71	36.071	Jaculus_jaculus
ENSAMXG00000010971	swt1	66	43.862	ENSKMAG00000012533	swt1	63	45.746	Kryptolebias_marmoratus
ENSAMXG00000010971	swt1	62	44.186	ENSLBEG00000020663	-	65	44.186	Labrus_bergylta
ENSAMXG00000010971	swt1	58	42.328	ENSLACG00000009194	SWT1	82	41.812	Latimeria_chalumnae
ENSAMXG00000010971	swt1	56	48.208	ENSLOCG00000001749	swt1	98	48.577	Lepisosteus_oculatus
ENSAMXG00000010971	swt1	58	39.071	ENSLAFG00000004346	-	97	39.071	Loxodonta_africana
ENSAMXG00000010971	swt1	59	38.737	ENSMFAG00000031793	SWT1	96	38.743	Macaca_fascicularis
ENSAMXG00000010971	swt1	60	37.353	ENSMMUG00000013882	SWT1	96	38.435	Macaca_mulatta
ENSAMXG00000010971	swt1	59	38.737	ENSMNEG00000035502	SWT1	96	38.743	Macaca_nemestrina
ENSAMXG00000010971	swt1	58	38.502	ENSMLEG00000038692	SWT1	96	38.502	Mandrillus_leucophaeus
ENSAMXG00000010971	swt1	59	46.701	ENSMZEG00005018489	swt1	70	46.218	Maylandia_zebra
ENSAMXG00000010971	swt1	55	39.330	ENSMGAG00000000973	SWT1	93	39.330	Meleagris_gallopavo
ENSAMXG00000010971	swt1	69	34.789	ENSMAUG00000007996	Swt1	61	36.189	Mesocricetus_auratus
ENSAMXG00000010971	swt1	59	38.671	ENSMICG00000014975	SWT1	64	38.501	Microcebus_murinus
ENSAMXG00000010971	swt1	76	33.631	ENSMOCG00000009776	Swt1	64	37.605	Microtus_ochrogaster
ENSAMXG00000010971	swt1	60	37.851	ENSMODG00000007472	SWT1	64	37.851	Monodelphis_domestica
ENSAMXG00000010971	swt1	85	40.405	ENSMALG00000019308	swt1	59	48.432	Monopterus_albus
ENSAMXG00000010971	swt1	59	38.710	MGP_CAROLIEiJ_G0014692	Swt1	75	42.439	Mus_caroli
ENSAMXG00000010971	swt1	59	37.797	ENSMUSG00000052748	Swt1	69	45.977	Mus_musculus
ENSAMXG00000010971	swt1	59	38.617	MGP_PahariEiJ_G0027928	Swt1	75	41.951	Mus_pahari
ENSAMXG00000010971	swt1	59	38.265	MGP_SPRETEiJ_G0015499	Swt1	69	46.552	Mus_spretus
ENSAMXG00000010971	swt1	59	40.068	ENSMPUG00000011913	SWT1	64	40.068	Mustela_putorius_furo
ENSAMXG00000010971	swt1	61	39.833	ENSMLUG00000001142	SWT1	64	39.833	Myotis_lucifugus
ENSAMXG00000010971	swt1	57	38.036	ENSNGAG00000021080	Swt1	62	37.805	Nannospalax_galili
ENSAMXG00000010971	swt1	59	39.071	ENSNLEG00000018031	SWT1	63	39.071	Nomascus_leucogenys
ENSAMXG00000010971	swt1	58	46.523	ENSONIG00000009994	swt1	99	45.756	Oreochromis_niloticus
ENSAMXG00000010971	swt1	57	37.193	ENSOANG00000001013	-	71	36.572	Ornithorhynchus_anatinus
ENSAMXG00000010971	swt1	59	38.917	ENSOCUG00000004901	SWT1	65	38.917	Oryctolagus_cuniculus
ENSAMXG00000010971	swt1	70	41.643	ENSORLG00000009682	swt1	65	44.828	Oryzias_latipes
ENSAMXG00000010971	swt1	61	45.283	ENSORLG00020011654	swt1	66	45.283	Oryzias_latipes_hni
ENSAMXG00000010971	swt1	61	44.795	ENSORLG00015007734	swt1	66	44.795	Oryzias_latipes_hsok
ENSAMXG00000010971	swt1	70	43.902	ENSOMEG00000006607	swt1	62	45.894	Oryzias_melastigma
ENSAMXG00000010971	swt1	59	39.629	ENSOGAG00000016195	SWT1	64	39.460	Otolemur_garnettii
ENSAMXG00000010971	swt1	60	39.761	ENSOARG00000004156	SWT1	63	39.420	Ovis_aries
ENSAMXG00000010971	swt1	59	38.316	ENSPPAG00000021400	SWT1	63	38.316	Pan_paniscus
ENSAMXG00000010971	swt1	58	39.298	ENSPPRG00000023754	SWT1	62	39.442	Panthera_pardus
ENSAMXG00000010971	swt1	58	39.298	ENSPTIG00000021889	SWT1	62	39.442	Panthera_tigris_altaica
ENSAMXG00000010971	swt1	59	38.316	ENSPTRG00000001777	SWT1	63	38.316	Pan_troglodytes
ENSAMXG00000010971	swt1	86	31.917	ENSPANG00000005099	SWT1	96	38.957	Papio_anubis
ENSAMXG00000010971	swt1	57	51.878	ENSPKIG00000005979	swt1	58	51.878	Paramormyrops_kingsleyae
ENSAMXG00000010971	swt1	57	40.636	ENSPSIG00000008961	SWT1	61	40.636	Pelodiscus_sinensis
ENSAMXG00000010971	swt1	59	38.397	ENSPEMG00000008208	Swt1	64	38.397	Peromyscus_maniculatus_bairdii
ENSAMXG00000010971	swt1	60	36.967	ENSPCIG00000002443	SWT1	65	36.967	Phascolarctos_cinereus
ENSAMXG00000010971	swt1	78	37.306	ENSPFOG00000010988	-	75	41.896	Poecilia_formosa
ENSAMXG00000010971	swt1	76	38.964	ENSPLAG00000022908	-	61	44.959	Poecilia_latipinna
ENSAMXG00000010971	swt1	73	39.309	ENSPMEG00000006943	-	61	44.959	Poecilia_mexicana
ENSAMXG00000010971	swt1	59	38.660	ENSPPYG00000000415	SWT1	63	38.660	Pongo_abelii
ENSAMXG00000010971	swt1	50	43.489	ENSPCAG00000008337	SWT1	54	43.489	Procavia_capensis
ENSAMXG00000010971	swt1	59	37.285	ENSPVAG00000005968	SWT1	64	37.627	Pteropus_vampyrus
ENSAMXG00000010971	swt1	59	46.701	ENSPNYG00000012934	swt1	70	46.218	Pundamilia_nyererei
ENSAMXG00000010971	swt1	98	61.771	ENSPNAG00000017795	swt1	100	61.578	Pygocentrus_nattereri
ENSAMXG00000010971	swt1	59	38.870	ENSRNOG00000032258	Swt1	65	38.870	Rattus_norvegicus
ENSAMXG00000010971	swt1	59	37.522	ENSRBIG00000040630	SWT1	96	37.500	Rhinopithecus_bieti
ENSAMXG00000010971	swt1	59	39.003	ENSSBOG00000028825	SWT1	63	39.003	Saimiri_boliviensis_boliviensis
ENSAMXG00000010971	swt1	58	38.632	ENSSHAG00000009241	SWT1	62	38.632	Sarcophilus_harrisii
ENSAMXG00000010971	swt1	57	55.759	ENSSFOG00015004895	swt1	56	55.759	Scleropages_formosus
ENSAMXG00000010971	swt1	59	49.082	ENSSDUG00000012345	swt1	62	49.251	Seriola_dumerili
ENSAMXG00000010971	swt1	87	40.712	ENSSLDG00000003821	swt1	59	50.523	Seriola_lalandi_dorsalis
ENSAMXG00000010971	swt1	66	38.279	ENSSPUG00000003899	SWT1	66	39.934	Sphenodon_punctatus
ENSAMXG00000010971	swt1	56	48.336	ENSSPAG00000001030	swt1	58	48.687	Stegastes_partitus
ENSAMXG00000010971	swt1	60	39.262	ENSSSCG00000015569	SWT1	65	38.992	Sus_scrofa
ENSAMXG00000010971	swt1	56	40.290	ENSTGUG00000003718	-	98	40.290	Taeniopygia_guttata
ENSAMXG00000010971	swt1	57	46.126	ENSTRUG00000006420	swt1	62	46.126	Takifugu_rubripes
ENSAMXG00000010971	swt1	59	38.605	ENSTTRG00000005914	SWT1	64	38.605	Tursiops_truncatus
ENSAMXG00000010971	swt1	59	40.678	ENSUAMG00000020937	SWT1	70	40.436	Ursus_americanus
ENSAMXG00000010971	swt1	59	40.678	ENSUMAG00000021918	SWT1	65	40.436	Ursus_maritimus
ENSAMXG00000010971	swt1	51	40.206	ENSVPAG00000011855	SWT1	55	39.356	Vicugna_pacos
ENSAMXG00000010971	swt1	58	39.791	ENSVVUG00000009182	SWT1	65	39.791	Vulpes_vulpes
ENSAMXG00000010971	swt1	60	45.964	ENSXMAG00000023472	-	62	45.964	Xiphophorus_maculatus