EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000011002 (Gene tree)
Gene ID: -
Gene Symbol: rnf17
Alias: TDRD4|im:7147535|wu:fj98c04
Full Name: RING finger protein 17
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 22139 bases
Position: chr19:25732401-25754539
Accession: 103035604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000011315	TUDOR	PF00567.24	3.1e-63	1	5
ENSAMXP00000011315	TUDOR	PF00567.24	3.1e-63	2	5
ENSAMXP00000011315	TUDOR	PF00567.24	3.1e-63	3	5
ENSAMXP00000011315	TUDOR	PF00567.24	3.1e-63	4	5
ENSAMXP00000011315	TUDOR	PF00567.24	3.1e-63	5	5
ENSAMXP00000050468	TUDOR	PF00567.24	1.2e-57	1	5
ENSAMXP00000050468	TUDOR	PF00567.24	1.2e-57	2	5
ENSAMXP00000050468	TUDOR	PF00567.24	1.2e-57	3	5
ENSAMXP00000050468	TUDOR	PF00567.24	1.2e-57	4	5
ENSAMXP00000050468	TUDOR	PF00567.24	1.2e-57	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000011315	-	3996	XM_022680479	ENSAMXP00000011315	1331 (aa)	XP_022536200	W5KUQ3
ENSAMXT00000053487	-	3813	-	ENSAMXP00000050468	1270 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000011002's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000011002's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000011002	rnf17	96	33.822	ENSG00000132972	RNF17	99	36.527	Homo_sapiens
ENSAMXG00000011002	rnf17	92	47.619	ENSAPOG00000017034	rnf17	86	48.250	Acanthochromis_polyacanthus
ENSAMXG00000011002	rnf17	98	34.098	ENSAMEG00000017340	RNF17	90	34.098	Ailuropoda_melanoleuca
ENSAMXG00000011002	rnf17	99	48.861	ENSAOCG00000018283	rnf17	91	49.026	Amphiprion_ocellaris
ENSAMXG00000011002	rnf17	99	44.561	ENSAPEG00000022338	rnf17	99	44.703	Amphiprion_percula
ENSAMXG00000011002	rnf17	97	48.402	ENSATEG00000002067	rnf17	90	49.360	Anabas_testudineus
ENSAMXG00000011002	rnf17	84	32.621	ENSAPLG00000003969	RNF17	84	32.049	Anas_platyrhynchos
ENSAMXG00000011002	rnf17	84	35.153	ENSACAG00000001418	RNF17	75	35.655	Anolis_carolinensis
ENSAMXG00000011002	rnf17	80	35.922	ENSANAG00000029969	RNF17	94	31.220	Aotus_nancymaae
ENSAMXG00000011002	rnf17	99	47.855	ENSACLG00000018279	rnf17	92	47.679	Astatotilapia_calliptera
ENSAMXG00000011002	rnf17	84	32.949	ENSCJAG00000018937	RNF17	99	36.541	Callithrix_jacchus
ENSAMXG00000011002	rnf17	98	33.904	ENSCAFG00000007418	RNF17	98	31.007	Canis_familiaris
ENSAMXG00000011002	rnf17	98	31.395	ENSCHIG00000026716	RNF17	99	35.469	Capra_hircus
ENSAMXG00000011002	rnf17	96	34.288	ENSTSYG00000000365	RNF17	99	35.661	Carlito_syrichta
ENSAMXG00000011002	rnf17	95	33.826	ENSCCAG00000026725	RNF17	99	35.768	Cebus_capucinus
ENSAMXG00000011002	rnf17	96	33.904	ENSCATG00000040352	RNF17	99	36.527	Cercocebus_atys
ENSAMXG00000011002	rnf17	94	34.739	ENSCLAG00000004127	RNF17	74	34.739	Chinchilla_lanigera
ENSAMXG00000011002	rnf17	96	33.904	ENSCSAG00000018019	RNF17	89	33.904	Chlorocebus_sabaeus
ENSAMXG00000011002	rnf17	58	47.407	ENSCHOG00000013310	RNF17	56	47.407	Choloepus_hoffmanni
ENSAMXG00000011002	rnf17	84	36.120	ENSCPBG00000020920	RNF17	78	36.303	Chrysemys_picta_bellii
ENSAMXG00000011002	rnf17	97	33.388	ENSCANG00000032927	RNF17	99	36.826	Colobus_angolensis_palliatus
ENSAMXG00000011002	rnf17	96	34.736	ENSCGRG00001022658	Rnf17	87	34.736	Cricetulus_griseus_chok1gshd
ENSAMXG00000011002	rnf17	96	34.736	ENSCGRG00000009924	Rnf17	87	34.736	Cricetulus_griseus_crigri
ENSAMXG00000011002	rnf17	98	43.900	ENSCSEG00000008626	rnf17	92	43.900	Cynoglossus_semilaevis
ENSAMXG00000011002	rnf17	94	42.548	ENSCVAG00000017008	rnf17	98	44.106	Cyprinodon_variegatus
ENSAMXG00000011002	rnf17	99	66.667	ENSDARG00000056387	rnf17	96	60.105	Danio_rerio
ENSAMXG00000011002	rnf17	98	34.215	ENSDNOG00000006115	RNF17	88	34.215	Dasypus_novemcinctus
ENSAMXG00000011002	rnf17	98	34.483	ENSECAG00000017152	RNF17	88	34.483	Equus_caballus
ENSAMXG00000011002	rnf17	61	31.897	ENSEEUG00000000332	RNF17	65	31.897	Erinaceus_europaeus
ENSAMXG00000011002	rnf17	99	53.172	ENSELUG00000005626	rnf17	91	52.922	Esox_lucius
ENSAMXG00000011002	rnf17	97	34.072	ENSFCAG00000004914	RNF17	99	35.821	Felis_catus
ENSAMXG00000011002	rnf17	96	30.337	ENSFALG00000008766	RNF17	93	30.267	Ficedula_albicollis
ENSAMXG00000011002	rnf17	97	33.719	ENSFDAG00000017857	RNF17	88	33.719	Fukomys_damarensis
ENSAMXG00000011002	rnf17	99	46.232	ENSFHEG00000014822	rnf17	91	45.971	Fundulus_heteroclitus
ENSAMXG00000011002	rnf17	69	39.130	ENSGMOG00000015560	-	100	41.292	Gadus_morhua
ENSAMXG00000011002	rnf17	92	44.391	ENSGAFG00000004463	rnf17	99	45.223	Gambusia_affinis
ENSAMXG00000011002	rnf17	65	52.709	ENSGACG00000001340	-	100	52.709	Gasterosteus_aculeatus
ENSAMXG00000011002	rnf17	79	33.364	ENSGAGG00000016999	RNF17	70	33.210	Gopherus_agassizii
ENSAMXG00000011002	rnf17	96	33.741	ENSGGOG00000014491	RNF17	99	36.527	Gorilla_gorilla
ENSAMXG00000011002	rnf17	100	46.886	ENSHBUG00000003554	rnf17	91	47.679	Haplochromis_burtoni
ENSAMXG00000011002	rnf17	79	36.585	ENSHGLG00000007270	RNF17	73	37.393	Heterocephalus_glaber_female
ENSAMXG00000011002	rnf17	79	36.585	ENSHGLG00100017393	RNF17	74	37.393	Heterocephalus_glaber_male
ENSAMXG00000011002	rnf17	91	40.898	ENSHCOG00000017676	rnf17	94	42.352	Hippocampus_comes
ENSAMXG00000011002	rnf17	99	66.873	ENSIPUG00000001087	rnf17	93	67.378	Ictalurus_punctatus
ENSAMXG00000011002	rnf17	99	34.078	ENSJJAG00000016584	Rnf17	87	34.574	Jaculus_jaculus
ENSAMXG00000011002	rnf17	99	48.354	ENSKMAG00000013403	rnf17	91	47.929	Kryptolebias_marmoratus
ENSAMXG00000011002	rnf17	91	47.184	ENSLBEG00000014910	rnf17	84	47.663	Labrus_bergylta
ENSAMXG00000011002	rnf17	62	35.974	ENSLACG00000000323	RNF17	81	35.867	Latimeria_chalumnae
ENSAMXG00000011002	rnf17	99	47.945	ENSLOCG00000010768	rnf17	88	47.005	Lepisosteus_oculatus
ENSAMXG00000011002	rnf17	96	33.904	ENSMFAG00000032388	RNF17	99	36.527	Macaca_fascicularis
ENSAMXG00000011002	rnf17	96	33.959	ENSMMUG00000014610	RNF17	99	36.527	Macaca_mulatta
ENSAMXG00000011002	rnf17	96	33.822	ENSMNEG00000011234	RNF17	99	36.527	Macaca_nemestrina
ENSAMXG00000011002	rnf17	95	33.987	ENSMLEG00000030227	RNF17	97	30.826	Mandrillus_leucophaeus
ENSAMXG00000011002	rnf17	90	46.831	ENSMAMG00000020403	rnf17	95	47.286	Mastacembelus_armatus
ENSAMXG00000011002	rnf17	100	46.970	ENSMZEG00005019166	rnf17	92	47.679	Maylandia_zebra
ENSAMXG00000011002	rnf17	87	31.592	ENSMGAG00000015138	RNF17	95	30.471	Meleagris_gallopavo
ENSAMXG00000011002	rnf17	95	35.457	ENSMAUG00000004788	Rnf17	86	35.457	Mesocricetus_auratus
ENSAMXG00000011002	rnf17	96	34.050	ENSMICG00000010364	RNF17	99	36.513	Microcebus_murinus
ENSAMXG00000011002	rnf17	54	37.736	ENSMOCG00000011818	-	99	37.736	Microtus_ochrogaster
ENSAMXG00000011002	rnf17	91	43.072	ENSMMOG00000019514	rnf17	93	51.449	Mola_mola
ENSAMXG00000011002	rnf17	98	35.053	ENSMODG00000007827	RNF17	88	35.053	Monodelphis_domestica
ENSAMXG00000011002	rnf17	99	46.442	ENSMALG00000016943	rnf17	90	46.147	Monopterus_albus
ENSAMXG00000011002	rnf17	97	34.539	MGP_CAROLIEiJ_G0019337	Rnf17	88	34.539	Mus_caroli
ENSAMXG00000011002	rnf17	97	34.457	ENSMUSG00000000365	Rnf17	88	34.457	Mus_musculus
ENSAMXG00000011002	rnf17	97	34.600	MGP_PahariEiJ_G0030355	Rnf17	88	34.600	Mus_pahari
ENSAMXG00000011002	rnf17	96	34.539	MGP_SPRETEiJ_G0020228	Rnf17	87	34.539	Mus_spretus
ENSAMXG00000011002	rnf17	97	34.128	ENSMPUG00000013305	RNF17	90	34.128	Mustela_putorius_furo
ENSAMXG00000011002	rnf17	96	33.826	ENSMLUG00000003903	RNF17	89	33.826	Myotis_lucifugus
ENSAMXG00000011002	rnf17	97	34.409	ENSNGAG00000013553	Rnf17	88	34.517	Nannospalax_galili
ENSAMXG00000011002	rnf17	91	45.462	ENSNBRG00000012006	rnf17	97	46.542	Neolamprologus_brichardi
ENSAMXG00000011002	rnf17	80	36.592	ENSNLEG00000013780	RNF17	99	36.692	Nomascus_leucogenys
ENSAMXG00000011002	rnf17	99	47.855	ENSONIG00000015746	rnf17	100	46.656	Oreochromis_niloticus
ENSAMXG00000011002	rnf17	98	34.372	ENSOCUG00000007384	RNF17	89	34.372	Oryctolagus_cuniculus
ENSAMXG00000011002	rnf17	90	43.707	ENSORLG00000012818	rnf17	93	44.643	Oryzias_latipes
ENSAMXG00000011002	rnf17	99	44.813	ENSORLG00020009879	-	92	44.898	Oryzias_latipes_hni
ENSAMXG00000011002	rnf17	99	44.728	ENSORLG00015013027	-	92	44.813	Oryzias_latipes_hsok
ENSAMXG00000011002	rnf17	85	42.736	ENSOMEG00000009891	rnf17	96	43.342	Oryzias_melastigma
ENSAMXG00000011002	rnf17	83	36.170	ENSOGAG00000014803	RNF17	74	36.196	Otolemur_garnettii
ENSAMXG00000011002	rnf17	96	34.206	ENSOARG00000014641	RNF17	89	34.072	Ovis_aries
ENSAMXG00000011002	rnf17	98	31.432	ENSPPAG00000028779	RNF17	99	36.692	Pan_paniscus
ENSAMXG00000011002	rnf17	97	34.100	ENSPPRG00000009230	RNF17	99	35.522	Panthera_pardus
ENSAMXG00000011002	rnf17	97	34.100	ENSPTIG00000001738	RNF17	99	35.522	Panthera_tigris_altaica
ENSAMXG00000011002	rnf17	96	33.905	ENSPTRG00000005713	RNF17	99	36.692	Pan_troglodytes
ENSAMXG00000011002	rnf17	98	31.530	ENSPANG00000007640	RNF17	99	36.527	Papio_anubis
ENSAMXG00000011002	rnf17	84	46.512	ENSPKIG00000001648	rnf17	91	46.809	Paramormyrops_kingsleyae
ENSAMXG00000011002	rnf17	84	35.106	ENSPSIG00000011245	RNF17	96	39.522	Pelodiscus_sinensis
ENSAMXG00000011002	rnf17	96	34.959	ENSPEMG00000008693	Rnf17	87	35.041	Peromyscus_maniculatus_bairdii
ENSAMXG00000011002	rnf17	80	32.483	ENSPCIG00000009190	-	91	37.317	Phascolarctos_cinereus
ENSAMXG00000011002	rnf17	99	47.963	ENSPFOG00000007124	rnf17	94	47.852	Poecilia_formosa
ENSAMXG00000011002	rnf17	99	47.911	ENSPLAG00000006198	rnf17	91	48.382	Poecilia_latipinna
ENSAMXG00000011002	rnf17	99	48.240	ENSPMEG00000022432	rnf17	92	48.552	Poecilia_mexicana
ENSAMXG00000011002	rnf17	83	46.602	ENSPREG00000001414	rnf17	82	47.784	Poecilia_reticulata
ENSAMXG00000011002	rnf17	94	36.842	ENSPPYG00000005215	RNF17	89	33.822	Pongo_abelii
ENSAMXG00000011002	rnf17	74	33.884	ENSPCOG00000020211	RNF17	66	33.884	Propithecus_coquereli
ENSAMXG00000011002	rnf17	76	48.905	ENSPVAG00000013021	RNF17	72	48.905	Pteropus_vampyrus
ENSAMXG00000011002	rnf17	99	77.020	ENSPNAG00000027505	rnf17	99	77.094	Pygocentrus_nattereri
ENSAMXG00000011002	rnf17	96	34.679	ENSRNOG00000008059	Rnf17	87	34.679	Rattus_norvegicus
ENSAMXG00000011002	rnf17	96	33.416	ENSRBIG00000027010	RNF17	87	33.416	Rhinopithecus_bieti
ENSAMXG00000011002	rnf17	95	34.211	ENSRROG00000022801	RNF17	99	36.732	Rhinopithecus_roxellana
ENSAMXG00000011002	rnf17	84	33.498	ENSSBOG00000021661	RNF17	99	36.364	Saimiri_boliviensis_boliviensis
ENSAMXG00000011002	rnf17	99	35.275	ENSSHAG00000005609	RNF17	89	35.357	Sarcophilus_harrisii
ENSAMXG00000011002	rnf17	84	47.619	ENSSFOG00015023037	rnf17	90	47.277	Scleropages_formosus
ENSAMXG00000011002	rnf17	92	47.936	ENSSMAG00000007429	rnf17	88	48.269	Scophthalmus_maximus
ENSAMXG00000011002	rnf17	92	46.978	ENSSDUG00000013530	rnf17	90	48.440	Seriola_dumerili
ENSAMXG00000011002	rnf17	94	47.894	ENSSLDG00000019577	rnf17	89	48.624	Seriola_lalandi_dorsalis
ENSAMXG00000011002	rnf17	70	35.165	ENSSARG00000003016	RNF17	62	35.165	Sorex_araneus
ENSAMXG00000011002	rnf17	84	35.128	ENSSPUG00000008917	RNF17	80	34.140	Sphenodon_punctatus
ENSAMXG00000011002	rnf17	90	48.260	ENSSPAG00000001925	rnf17	88	48.542	Stegastes_partitus
ENSAMXG00000011002	rnf17	79	37.135	ENSSSCG00000009572	RNF17	82	37.994	Sus_scrofa
ENSAMXG00000011002	rnf17	84	30.980	ENSTGUG00000011267	-	99	30.836	Taeniopygia_guttata
ENSAMXG00000011002	rnf17	99	48.847	ENSTRUG00000015498	rnf17	90	48.847	Takifugu_rubripes
ENSAMXG00000011002	rnf17	83	49.636	ENSTNIG00000015681	rnf17	99	49.636	Tetraodon_nigroviridis
ENSAMXG00000011002	rnf17	67	40.417	ENSTBEG00000000282	RNF17	55	40.417	Tupaia_belangeri
ENSAMXG00000011002	rnf17	74	39.564	ENSTTRG00000012698	RNF17	74	32.237	Tursiops_truncatus
ENSAMXG00000011002	rnf17	75	45.070	ENSVPAG00000011388	RNF17	58	45.070	Vicugna_pacos
ENSAMXG00000011002	rnf17	97	34.106	ENSVVUG00000006226	RNF17	90	34.051	Vulpes_vulpes
ENSAMXG00000011002	rnf17	79	31.180	ENSXETG00000034020	RNF17	100	38.889	Xenopus_tropicalis
ENSAMXG00000011002	rnf17	92	47.996	ENSXCOG00000018295	rnf17	88	47.919	Xiphophorus_couchianus
ENSAMXG00000011002	rnf17	92	48.601	ENSXMAG00000014747	rnf17	89	48.519	Xiphophorus_maculatus