EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000011116 (Gene tree)
Gene ID: 103035117
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 9335 bases
Position: chr12:2508604-2517938
Accession: 103035117
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000040772	EXOSC1	PF10447.9	2e-15	1	1
ENSAMXP00000011424	ECR1_N	PF14382.6	3.6e-14	1	1
ENSAMXP00000040772	ECR1_N	PF14382.6	5.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000011424	-	465	-	ENSAMXP00000011424	154 (aa)	-	W5KV12
ENSAMXT00000033716	-	1316	XM_022674499	ENSAMXP00000040772	194 (aa)	XP_022530220	UPI000BBDDAEC

Gene Model

Click here to download ENSAMXG00000011116's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000011116's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000011116	exosc1	98	81.675	ENSG00000171311	EXOSC1	98	81.675	Homo_sapiens
ENSAMXG00000011116	exosc1	100	95.361	ENSAPOG00000007822	exosc1	100	95.361	Acanthochromis_polyacanthus
ENSAMXG00000011116	exosc1	98	82.199	ENSAMEG00000000129	EXOSC1	98	82.199	Ailuropoda_melanoleuca
ENSAMXG00000011116	exosc1	95	93.514	ENSACIG00000018956	exosc1	91	93.514	Amphilophus_citrinellus
ENSAMXG00000011116	exosc1	100	94.845	ENSAOCG00000010699	exosc1	100	94.845	Amphiprion_ocellaris
ENSAMXG00000011116	exosc1	93	83.889	ENSAPEG00000012690	exosc1	97	83.889	Amphiprion_percula
ENSAMXG00000011116	exosc1	100	94.330	ENSATEG00000018683	exosc1	100	94.330	Anabas_testudineus
ENSAMXG00000011116	exosc1	96	80.214	ENSACAG00000002101	EXOSC1	96	80.214	Anolis_carolinensis
ENSAMXG00000011116	exosc1	98	81.675	ENSANAG00000034669	EXOSC1	98	81.675	Aotus_nancymaae
ENSAMXG00000011116	exosc1	100	94.330	ENSACLG00000021243	exosc1	100	94.330	Astatotilapia_calliptera
ENSAMXG00000011116	exosc1	98	82.199	ENSBTAG00000012699	EXOSC1	98	82.199	Bos_taurus
ENSAMXG00000011116	exosc1	94	36.649	WBGene00012966	exos-1	92	36.649	Caenorhabditis_elegans
ENSAMXG00000011116	exosc1	98	81.152	ENSCJAG00000016586	EXOSC1	98	81.152	Callithrix_jacchus
ENSAMXG00000011116	exosc1	98	81.675	ENSCAFG00000009068	EXOSC1	92	81.675	Canis_familiaris
ENSAMXG00000011116	exosc1	98	81.675	ENSCAFG00020006002	EXOSC1	92	81.675	Canis_lupus_dingo
ENSAMXG00000011116	exosc1	98	82.199	ENSCHIG00000015253	EXOSC1	98	82.199	Capra_hircus
ENSAMXG00000011116	exosc1	98	80.628	ENSTSYG00000000760	EXOSC1	98	80.628	Carlito_syrichta
ENSAMXG00000011116	exosc1	98	82.199	ENSCPOG00000001173	EXOSC1	98	82.199	Cavia_porcellus
ENSAMXG00000011116	exosc1	97	45.223	ENSCCAG00000023986	EXOSC1	97	45.223	Cebus_capucinus
ENSAMXG00000011116	exosc1	98	81.675	ENSCATG00000034114	EXOSC1	98	81.675	Cercocebus_atys
ENSAMXG00000011116	exosc1	98	82.199	ENSCLAG00000002463	EXOSC1	98	82.199	Chinchilla_lanigera
ENSAMXG00000011116	exosc1	98	81.152	ENSCSAG00000005870	EXOSC1	98	81.152	Chlorocebus_sabaeus
ENSAMXG00000011116	exosc1	95	69.022	ENSCHOG00000006477	EXOSC1	98	69.022	Choloepus_hoffmanni
ENSAMXG00000011116	exosc1	55	71.028	ENSCPBG00000011949	EXOSC1	88	71.028	Chrysemys_picta_bellii
ENSAMXG00000011116	exosc1	99	53.368	ENSCING00000022734	-	92	53.368	Ciona_intestinalis
ENSAMXG00000011116	exosc1	99	57.513	ENSCSAVG00000010865	-	98	57.513	Ciona_savignyi
ENSAMXG00000011116	exosc1	98	81.675	ENSCANG00000034159	EXOSC1	98	81.675	Colobus_angolensis_palliatus
ENSAMXG00000011116	exosc1	98	80.628	ENSCGRG00001000335	Exosc1	98	80.628	Cricetulus_griseus_chok1gshd
ENSAMXG00000011116	exosc1	98	80.628	ENSCGRG00000011602	Exosc1	98	80.628	Cricetulus_griseus_crigri
ENSAMXG00000011116	exosc1	100	79.897	ENSCSEG00000007895	exosc1	97	79.897	Cynoglossus_semilaevis
ENSAMXG00000011116	exosc1	100	85.567	ENSCVAG00000016748	exosc1	100	85.567	Cyprinodon_variegatus
ENSAMXG00000011116	exosc1	100	97.423	ENSDARG00000059841	exosc1	100	97.423	Danio_rerio
ENSAMXG00000011116	exosc1	74	78.621	ENSDNOG00000007983	EXOSC1	98	78.621	Dasypus_novemcinctus
ENSAMXG00000011116	exosc1	98	81.152	ENSDORG00000016528	Exosc1	98	81.152	Dipodomys_ordii
ENSAMXG00000011116	exosc1	95	50.000	FBgn0032346	Csl4	92	50.000	Drosophila_melanogaster
ENSAMXG00000011116	exosc1	98	80.105	ENSETEG00000002469	-	98	80.105	Echinops_telfairi
ENSAMXG00000011116	exosc1	97	68.229	ENSEBUG00000008164	exosc1	96	68.229	Eptatretus_burgeri
ENSAMXG00000011116	exosc1	98	72.775	ENSEASG00005008684	EXOSC1	98	72.775	Equus_asinus_asinus
ENSAMXG00000011116	exosc1	60	58.621	ENSECAG00000010621	EXOSC1	69	58.621	Equus_caballus
ENSAMXG00000011116	exosc1	98	80.628	ENSEEUG00000005647	EXOSC1	98	80.628	Erinaceus_europaeus
ENSAMXG00000011116	exosc1	99	88.832	ENSELUG00000017369	exosc1	87	88.832	Esox_lucius
ENSAMXG00000011116	exosc1	98	82.199	ENSFCAG00000040563	EXOSC1	92	82.199	Felis_catus
ENSAMXG00000011116	exosc1	98	80.105	ENSFALG00000008450	EXOSC1	98	80.105	Ficedula_albicollis
ENSAMXG00000011116	exosc1	98	82.199	ENSFDAG00000000846	EXOSC1	98	82.199	Fukomys_damarensis
ENSAMXG00000011116	exosc1	100	86.082	ENSFHEG00000009154	exosc1	100	86.082	Fundulus_heteroclitus
ENSAMXG00000011116	exosc1	100	93.299	ENSGMOG00000008993	exosc1	100	93.299	Gadus_morhua
ENSAMXG00000011116	exosc1	98	69.110	ENSGALG00000039917	EXOSC1	99	84.828	Gallus_gallus
ENSAMXG00000011116	exosc1	100	86.598	ENSGAFG00000010265	exosc1	95	86.598	Gambusia_affinis
ENSAMXG00000011116	exosc1	100	91.237	ENSGACG00000018936	exosc1	100	91.237	Gasterosteus_aculeatus
ENSAMXG00000011116	exosc1	98	79.581	ENSGAGG00000019192	EXOSC1	98	79.581	Gopherus_agassizii
ENSAMXG00000011116	exosc1	98	70.681	ENSGGOG00000003099	EXOSC1	98	70.681	Gorilla_gorilla
ENSAMXG00000011116	exosc1	100	94.330	ENSHBUG00000017857	exosc1	100	94.330	Haplochromis_burtoni
ENSAMXG00000011116	exosc1	98	81.675	ENSHGLG00000016927	EXOSC1	98	81.675	Heterocephalus_glaber_female
ENSAMXG00000011116	exosc1	98	81.675	ENSHGLG00100012208	EXOSC1	98	81.675	Heterocephalus_glaber_male
ENSAMXG00000011116	exosc1	100	91.237	ENSHCOG00000019882	exosc1	100	91.237	Hippocampus_comes
ENSAMXG00000011116	exosc1	100	96.907	ENSIPUG00000007685	exosc1	100	96.907	Ictalurus_punctatus
ENSAMXG00000011116	exosc1	59	68.421	ENSSTOG00000029860	-	87	68.421	Ictidomys_tridecemlineatus
ENSAMXG00000011116	exosc1	98	81.152	ENSSTOG00000006615	EXOSC1	98	81.152	Ictidomys_tridecemlineatus
ENSAMXG00000011116	exosc1	98	81.675	ENSJJAG00000013311	Exosc1	98	81.675	Jaculus_jaculus
ENSAMXG00000011116	exosc1	100	90.206	ENSKMAG00000001202	exosc1	82	90.206	Kryptolebias_marmoratus
ENSAMXG00000011116	exosc1	100	93.814	ENSLBEG00000011448	exosc1	100	93.814	Labrus_bergylta
ENSAMXG00000011116	exosc1	99	86.792	ENSLOCG00000003776	exosc1	100	86.792	Lepisosteus_oculatus
ENSAMXG00000011116	exosc1	98	81.675	ENSLAFG00000015983	EXOSC1	98	81.675	Loxodonta_africana
ENSAMXG00000011116	exosc1	98	81.675	ENSMFAG00000001493	EXOSC1	98	81.675	Macaca_fascicularis
ENSAMXG00000011116	exosc1	98	81.675	ENSMMUG00000020028	EXOSC1	97	80.000	Macaca_mulatta
ENSAMXG00000011116	exosc1	98	81.675	ENSMNEG00000029816	EXOSC1	98	81.675	Macaca_nemestrina
ENSAMXG00000011116	exosc1	97	80.000	ENSMLEG00000027643	EXOSC1	97	80.000	Mandrillus_leucophaeus
ENSAMXG00000011116	exosc1	100	94.330	ENSMAMG00000012200	exosc1	100	94.330	Mastacembelus_armatus
ENSAMXG00000011116	exosc1	100	94.330	ENSMZEG00005007042	exosc1	100	94.330	Maylandia_zebra
ENSAMXG00000011116	exosc1	98	70.681	ENSMAUG00000020462	-	98	70.681	Mesocricetus_auratus
ENSAMXG00000011116	exosc1	98	81.675	ENSMICG00000007664	EXOSC1	98	78.808	Microcebus_murinus
ENSAMXG00000011116	exosc1	97	76.190	ENSMOCG00000017124	-	96	76.190	Microtus_ochrogaster
ENSAMXG00000011116	exosc1	98	80.628	ENSMOCG00000006004	-	98	80.628	Microtus_ochrogaster
ENSAMXG00000011116	exosc1	99	87.582	ENSMMOG00000021403	exosc1	100	87.582	Mola_mola
ENSAMXG00000011116	exosc1	98	82.292	ENSMODG00000004213	EXOSC1	98	82.292	Monodelphis_domestica
ENSAMXG00000011116	exosc1	95	94.054	ENSMALG00000007061	exosc1	93	94.054	Monopterus_albus
ENSAMXG00000011116	exosc1	98	80.105	MGP_CAROLIEiJ_G0022959	Exosc1	98	80.105	Mus_caroli
ENSAMXG00000011116	exosc1	98	80.105	ENSMUSG00000034321	Exosc1	98	80.105	Mus_musculus
ENSAMXG00000011116	exosc1	98	80.628	MGP_PahariEiJ_G0014449	Exosc1	98	80.628	Mus_pahari
ENSAMXG00000011116	exosc1	98	80.105	MGP_SPRETEiJ_G0023880	Exosc1	98	80.105	Mus_spretus
ENSAMXG00000011116	exosc1	98	82.199	ENSMPUG00000017044	EXOSC1	98	82.199	Mustela_putorius_furo
ENSAMXG00000011116	exosc1	98	81.675	ENSMLUG00000009228	EXOSC1	98	81.675	Myotis_lucifugus
ENSAMXG00000011116	exosc1	98	79.058	ENSNGAG00000022033	Exosc1	98	79.058	Nannospalax_galili
ENSAMXG00000011116	exosc1	100	92.857	ENSNBRG00000024007	exosc1	100	92.857	Neolamprologus_brichardi
ENSAMXG00000011116	exosc1	98	81.152	ENSNLEG00000013872	EXOSC1	98	81.152	Nomascus_leucogenys
ENSAMXG00000011116	exosc1	58	75.000	ENSMEUG00000002246	EXOSC1	97	75.000	Notamacropus_eugenii
ENSAMXG00000011116	exosc1	98	81.152	ENSOPRG00000005065	EXOSC1	98	81.152	Ochotona_princeps
ENSAMXG00000011116	exosc1	98	82.723	ENSODEG00000016709	EXOSC1	98	82.723	Octodon_degus
ENSAMXG00000011116	exosc1	100	94.330	ENSONIG00000017683	exosc1	99	94.330	Oreochromis_niloticus
ENSAMXG00000011116	exosc1	59	91.228	ENSOANG00000006563	EXOSC1	98	87.805	Ornithorhynchus_anatinus
ENSAMXG00000011116	exosc1	98	75.916	ENSOCUG00000026461	-	98	75.916	Oryctolagus_cuniculus
ENSAMXG00000011116	exosc1	98	80.208	ENSOCUG00000011898	-	98	80.208	Oryctolagus_cuniculus
ENSAMXG00000011116	exosc1	100	87.179	ENSORLG00000011595	exosc1	100	87.179	Oryzias_latipes
ENSAMXG00000011116	exosc1	100	87.179	ENSORLG00020005831	exosc1	100	87.179	Oryzias_latipes_hni
ENSAMXG00000011116	exosc1	100	86.667	ENSORLG00015004317	exosc1	100	86.667	Oryzias_latipes_hsok
ENSAMXG00000011116	exosc1	100	75.706	ENSOMEG00000013907	exosc1	100	75.706	Oryzias_melastigma
ENSAMXG00000011116	exosc1	98	81.152	ENSOGAG00000016259	EXOSC1	98	81.152	Otolemur_garnettii
ENSAMXG00000011116	exosc1	98	81.675	ENSOARG00000010136	EXOSC1	98	81.675	Ovis_aries
ENSAMXG00000011116	exosc1	97	80.000	ENSPPAG00000039842	EXOSC1	97	80.000	Pan_paniscus
ENSAMXG00000011116	exosc1	98	82.199	ENSPPRG00000023366	EXOSC1	98	82.199	Panthera_pardus
ENSAMXG00000011116	exosc1	98	82.199	ENSPTIG00000017701	EXOSC1	98	82.199	Panthera_tigris_altaica
ENSAMXG00000011116	exosc1	98	81.675	ENSPTRG00000002808	EXOSC1	98	81.675	Pan_troglodytes
ENSAMXG00000011116	exosc1	98	81.675	ENSPANG00000021324	EXOSC1	98	81.675	Papio_anubis
ENSAMXG00000011116	exosc1	100	93.814	ENSPKIG00000016037	exosc1	100	93.814	Paramormyrops_kingsleyae
ENSAMXG00000011116	exosc1	91	66.316	ENSPSIG00000013571	EXOSC1	98	80.165	Pelodiscus_sinensis
ENSAMXG00000011116	exosc1	100	80.412	ENSPMGG00000014002	exosc1	100	80.412	Periophthalmus_magnuspinnatus
ENSAMXG00000011116	exosc1	98	80.628	ENSPEMG00000010710	-	98	80.628	Peromyscus_maniculatus_bairdii
ENSAMXG00000011116	exosc1	95	73.118	ENSPMAG00000000195	exosc1	95	73.118	Petromyzon_marinus
ENSAMXG00000011116	exosc1	98	81.675	ENSPCIG00000002210	EXOSC1	97	81.675	Phascolarctos_cinereus
ENSAMXG00000011116	exosc1	100	85.567	ENSPFOG00000006755	exosc1	95	85.567	Poecilia_formosa
ENSAMXG00000011116	exosc1	100	85.567	ENSPLAG00000005880	exosc1	100	85.567	Poecilia_latipinna
ENSAMXG00000011116	exosc1	100	85.567	ENSPMEG00000015598	exosc1	95	85.567	Poecilia_mexicana
ENSAMXG00000011116	exosc1	100	73.196	ENSPREG00000000405	exosc1	94	73.196	Poecilia_reticulata
ENSAMXG00000011116	exosc1	98	81.675	ENSPPYG00000002531	EXOSC1	98	81.675	Pongo_abelii
ENSAMXG00000011116	exosc1	98	80.628	ENSPCAG00000009135	EXOSC1	98	80.628	Procavia_capensis
ENSAMXG00000011116	exosc1	98	75.393	ENSPCOG00000027539	EXOSC1	98	75.393	Propithecus_coquereli
ENSAMXG00000011116	exosc1	98	81.675	ENSPVAG00000003372	EXOSC1	98	81.675	Pteropus_vampyrus
ENSAMXG00000011116	exosc1	100	94.330	ENSPNYG00000021745	exosc1	100	94.330	Pundamilia_nyererei
ENSAMXG00000011116	exosc1	100	98.969	ENSPNAG00000001944	exosc1	100	98.969	Pygocentrus_nattereri
ENSAMXG00000011116	exosc1	98	80.628	ENSRNOG00000048708	Exosc1	98	80.628	Rattus_norvegicus
ENSAMXG00000011116	exosc1	98	81.675	ENSRBIG00000035618	EXOSC1	98	81.675	Rhinopithecus_bieti
ENSAMXG00000011116	exosc1	98	81.675	ENSRROG00000032589	EXOSC1	97	80.000	Rhinopithecus_roxellana
ENSAMXG00000011116	exosc1	65	37.423	YNL232W	CSL4	55	37.423	Saccharomyces_cerevisiae
ENSAMXG00000011116	exosc1	98	81.675	ENSSBOG00000000359	EXOSC1	98	81.675	Saimiri_boliviensis_boliviensis
ENSAMXG00000011116	exosc1	75	89.726	ENSSHAG00000018219	EXOSC1	99	89.726	Sarcophilus_harrisii
ENSAMXG00000011116	exosc1	100	93.299	ENSSFOG00015009069	exosc1	100	93.299	Scleropages_formosus
ENSAMXG00000011116	exosc1	100	90.722	ENSSFOG00015016289	-	100	90.722	Scleropages_formosus
ENSAMXG00000011116	exosc1	100	94.330	ENSSMAG00000003721	exosc1	100	94.330	Scophthalmus_maximus
ENSAMXG00000011116	exosc1	100	93.814	ENSSDUG00000002993	exosc1	100	93.814	Seriola_dumerili
ENSAMXG00000011116	exosc1	100	93.814	ENSSLDG00000025181	exosc1	100	93.814	Seriola_lalandi_dorsalis
ENSAMXG00000011116	exosc1	98	70.157	ENSSARG00000000162	EXOSC1	98	70.157	Sorex_araneus
ENSAMXG00000011116	exosc1	98	77.487	ENSSPUG00000012263	EXOSC1	98	77.487	Sphenodon_punctatus
ENSAMXG00000011116	exosc1	100	85.567	ENSSPAG00000016792	exosc1	83	85.567	Stegastes_partitus
ENSAMXG00000011116	exosc1	98	81.152	ENSSSCG00000010518	EXOSC1	89	81.152	Sus_scrofa
ENSAMXG00000011116	exosc1	98	79.581	ENSTGUG00000009692	EXOSC1	98	79.581	Taeniopygia_guttata
ENSAMXG00000011116	exosc1	98	80.526	ENSTRUG00000007706	exosc1	98	80.526	Takifugu_rubripes
ENSAMXG00000011116	exosc1	98	80.829	ENSTNIG00000014079	exosc1	97	80.829	Tetraodon_nigroviridis
ENSAMXG00000011116	exosc1	98	75.393	ENSTBEG00000006011	EXOSC1	98	75.393	Tupaia_belangeri
ENSAMXG00000011116	exosc1	94	83.607	ENSTTRG00000009887	EXOSC1	99	83.607	Tursiops_truncatus
ENSAMXG00000011116	exosc1	98	68.750	ENSUAMG00000010266	EXOSC1	98	68.750	Ursus_americanus
ENSAMXG00000011116	exosc1	98	68.750	ENSUMAG00000022002	EXOSC1	98	68.750	Ursus_maritimus
ENSAMXG00000011116	exosc1	98	81.675	ENSVVUG00000023192	EXOSC1	62	81.675	Vulpes_vulpes
ENSAMXG00000011116	exosc1	99	79.275	ENSXETG00000003434	exosc1	99	79.275	Xenopus_tropicalis
ENSAMXG00000011116	exosc1	62	89.256	ENSXCOG00000014499	exosc1	93	89.256	Xiphophorus_couchianus
ENSAMXG00000011116	exosc1	100	73.711	ENSXMAG00000023382	exosc1	94	73.711	Xiphophorus_maculatus