EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000011126 (Gene tree)
Gene ID: 103030534
Gene Symbol: fip1l1b
Alias: fip1l1|wu:fd36f11|zgc:103421
Full Name: pre-mRNA 3'-end-processing factor FIP1-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 13937 bases
Position: chr21:4955809-4969745
Accession: 103030534
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000011441	Fip1	PF05182.13	1.5e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000011441	-	1918	XM_022681693	ENSAMXP00000011441	627 (aa)	XP_022537414	W5KV29

Gene Model

Click here to download ENSAMXG00000011126's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000011126's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000011126	fip1l1b	63	87.500	ENSACIG00000001454	fip1l1b	96	87.500	Amphilophus_citrinellus
ENSAMXG00000011126	fip1l1b	89	73.286	ENSAOCG00000021043	fip1l1b	100	72.340	Amphiprion_ocellaris
ENSAMXG00000011126	fip1l1b	89	73.286	ENSAPEG00000022229	fip1l1b	100	72.340	Amphiprion_percula
ENSAMXG00000011126	fip1l1b	89	74.035	ENSATEG00000021757	fip1l1b	100	72.212	Anabas_testudineus
ENSAMXG00000011126	fip1l1b	77	65.552	ENSACAG00000010556	-	59	69.811	Anolis_carolinensis
ENSAMXG00000011126	fip1l1b	89	73.898	ENSACLG00000010418	fip1l1b	100	71.858	Astatotilapia_calliptera
ENSAMXG00000011126	fip1l1b	74	61.044	ENSBTAG00000020653	FIP1L1	54	57.321	Bos_taurus
ENSAMXG00000011126	fip1l1b	74	60.843	ENSCHIG00000025903	-	56	53.488	Capra_hircus
ENSAMXG00000011126	fip1l1b	74	53.586	ENSCAPG00000009569	-	81	51.875	Cavia_aperea
ENSAMXG00000011126	fip1l1b	74	63.924	ENSCPOG00000010770	-	55	55.185	Cavia_porcellus
ENSAMXG00000011126	fip1l1b	89	57.313	ENSCPBG00000025019	-	67	70.323	Chrysemys_picta_bellii
ENSAMXG00000011126	fip1l1b	89	59.337	ENSCGRG00001018568	Fip1l1	56	55.521	Cricetulus_griseus_chok1gshd
ENSAMXG00000011126	fip1l1b	89	59.337	ENSCGRG00000000208	Fip1l1	56	55.521	Cricetulus_griseus_crigri
ENSAMXG00000011126	fip1l1b	89	72.759	ENSCSEG00000006583	fip1l1b	58	67.988	Cynoglossus_semilaevis
ENSAMXG00000011126	fip1l1b	89	70.455	ENSCVAG00000023435	fip1l1b	57	66.871	Cyprinodon_variegatus
ENSAMXG00000011126	fip1l1b	89	75.945	ENSDARG00000070431	fip1l1b	100	72.852	Danio_rerio
ENSAMXG00000011126	fip1l1b	89	40.813	ENSDARG00000043328	fip1l1a	92	45.685	Danio_rerio
ENSAMXG00000011126	fip1l1b	58	64.162	ENSETEG00000018271	-	75	69.677	Echinops_telfairi
ENSAMXG00000011126	fip1l1b	69	59.957	ENSEASG00005019566	-	55	55.625	Equus_asinus_asinus
ENSAMXG00000011126	fip1l1b	88	51.327	ENSELUG00000004607	fip1l1a	68	57.983	Esox_lucius
ENSAMXG00000011126	fip1l1b	61	74.429	ENSELUG00000001280	fip1l1b	78	72.052	Esox_lucius
ENSAMXG00000011126	fip1l1b	89	70.862	ENSFHEG00000003843	fip1l1b	56	68.712	Fundulus_heteroclitus
ENSAMXG00000011126	fip1l1b	89	61.618	ENSGMOG00000004913	fip1l1b	100	61.525	Gadus_morhua
ENSAMXG00000011126	fip1l1b	89	60.424	ENSGALG00000013943	-	54	58.255	Gallus_gallus
ENSAMXG00000011126	fip1l1b	89	70.548	ENSGAFG00000008253	fip1l1b	56	68.902	Gambusia_affinis
ENSAMXG00000011126	fip1l1b	89	62.336	ENSGACG00000015946	fip1l1b	100	61.969	Gasterosteus_aculeatus
ENSAMXG00000011126	fip1l1b	89	57.483	ENSGAGG00000009763	-	70	62.564	Gopherus_agassizii
ENSAMXG00000011126	fip1l1b	89	73.898	ENSHBUG00000013978	fip1l1b	100	71.858	Haplochromis_burtoni
ENSAMXG00000011126	fip1l1b	89	73.205	ENSHCOG00000015834	fip1l1b	57	69.419	Hippocampus_comes
ENSAMXG00000011126	fip1l1b	89	66.667	ENSIPUG00000022454	fip1l1b	100	83.069	Ictalurus_punctatus
ENSAMXG00000011126	fip1l1b	89	70.650	ENSKMAG00000021938	fip1l1b	100	69.258	Kryptolebias_marmoratus
ENSAMXG00000011126	fip1l1b	89	74.423	ENSLBEG00000028819	fip1l1b	57	71.739	Labrus_bergylta
ENSAMXG00000011126	fip1l1b	89	60.424	ENSLACG00000011991	fip1l1a	54	57.367	Latimeria_chalumnae
ENSAMXG00000011126	fip1l1b	89	65.104	ENSLOCG00000014127	fip1l1b	57	62.310	Lepisosteus_oculatus
ENSAMXG00000011126	fip1l1b	89	71.705	ENSMAMG00000004535	fip1l1b	56	67.890	Mastacembelus_armatus
ENSAMXG00000011126	fip1l1b	89	73.898	ENSMZEG00005023828	fip1l1b	100	71.858	Maylandia_zebra
ENSAMXG00000011126	fip1l1b	81	57.225	ENSMGAG00000011885	-	72	65.877	Meleagris_gallopavo
ENSAMXG00000011126	fip1l1b	89	56.643	ENSMAUG00000010526	Fip1l1	56	51.077	Mesocricetus_auratus
ENSAMXG00000011126	fip1l1b	89	58.191	ENSMOCG00000008020	Fip1l1	71	50.000	Microtus_ochrogaster
ENSAMXG00000011126	fip1l1b	67	53.796	ENSMODG00000020654	-	64	51.977	Monodelphis_domestica
ENSAMXG00000011126	fip1l1b	89	59.147	ENSMALG00000000838	fip1l1b	87	73.333	Monopterus_albus
ENSAMXG00000011126	fip1l1b	74	63.025	MGP_CAROLIEiJ_G0027304	Fip1l1	79	52.355	Mus_caroli
ENSAMXG00000011126	fip1l1b	74	63.025	ENSMUSG00000029227	Fip1l1	79	52.355	Mus_musculus
ENSAMXG00000011126	fip1l1b	74	63.025	MGP_PahariEiJ_G0017085	Fip1l1	79	52.355	Mus_pahari
ENSAMXG00000011126	fip1l1b	74	63.025	MGP_SPRETEiJ_G0028299	Fip1l1	79	52.355	Mus_spretus
ENSAMXG00000011126	fip1l1b	74	63.291	ENSNGAG00000008849	Fip1l1	71	50.136	Nannospalax_galili
ENSAMXG00000011126	fip1l1b	89	74.603	ENSNBRG00000017832	fip1l1b	57	71.517	Neolamprologus_brichardi
ENSAMXG00000011126	fip1l1b	89	73.545	ENSONIG00000008785	fip1l1b	100	70.796	Oreochromis_niloticus
ENSAMXG00000011126	fip1l1b	90	70.629	ENSORLG00000004397	fip1l1b	56	66.563	Oryzias_latipes
ENSAMXG00000011126	fip1l1b	90	70.629	ENSORLG00020008716	fip1l1b	56	66.563	Oryzias_latipes_hni
ENSAMXG00000011126	fip1l1b	90	70.629	ENSORLG00015006736	fip1l1b	56	67.183	Oryzias_latipes_hsok
ENSAMXG00000011126	fip1l1b	89	52.753	ENSOMEG00000015730	fip1l1b	62	44.633	Oryzias_melastigma
ENSAMXG00000011126	fip1l1b	89	65.071	ENSPMGG00000017028	fip1l1b	100	63.668	Periophthalmus_magnuspinnatus
ENSAMXG00000011126	fip1l1b	89	58.692	ENSPEMG00000002025	Fip1l1	71	49.727	Peromyscus_maniculatus_bairdii
ENSAMXG00000011126	fip1l1b	89	68.330	ENSPFOG00000014745	fip1l1b	56	69.846	Poecilia_formosa
ENSAMXG00000011126	fip1l1b	89	68.213	ENSPLAG00000010954	fip1l1b	56	69.846	Poecilia_latipinna
ENSAMXG00000011126	fip1l1b	89	68.330	ENSPMEG00000019187	fip1l1b	56	69.846	Poecilia_mexicana
ENSAMXG00000011126	fip1l1b	74	57.627	ENSPREG00000012535	fip1l1b	81	55.738	Poecilia_reticulata
ENSAMXG00000011126	fip1l1b	51	72.036	ENSPNYG00000015976	fip1l1b	84	70.948	Pundamilia_nyererei
ENSAMXG00000011126	fip1l1b	56	42.120	ENSPNAG00000009853	fip1l1a	84	42.320	Pygocentrus_nattereri
ENSAMXG00000011126	fip1l1b	58	78.763	ENSPNAG00000015341	fip1l1b	80	81.513	Pygocentrus_nattereri
ENSAMXG00000011126	fip1l1b	74	61.258	ENSRNOG00000002275	Fip1l1	56	55.657	Rattus_norvegicus
ENSAMXG00000011126	fip1l1b	89	73.997	ENSSMAG00000013444	fip1l1b	100	70.377	Scophthalmus_maximus
ENSAMXG00000011126	fip1l1b	89	73.730	ENSSDUG00000004117	fip1l1b	100	72.566	Seriola_dumerili
ENSAMXG00000011126	fip1l1b	89	74.341	ENSSLDG00000024099	fip1l1b	57	70.186	Seriola_lalandi_dorsalis
ENSAMXG00000011126	fip1l1b	63	63.731	ENSSARG00000001973	-	73	63.731	Sorex_araneus
ENSAMXG00000011126	fip1l1b	89	73.286	ENSSPAG00000017564	fip1l1b	57	70.807	Stegastes_partitus
ENSAMXG00000011126	fip1l1b	74	59.539	ENSTGUG00000007834	-	72	67.143	Taeniopygia_guttata
ENSAMXG00000011126	fip1l1b	89	68.182	ENSTRUG00000001545	fip1l1b	57	64.242	Takifugu_rubripes
ENSAMXG00000011126	fip1l1b	89	62.852	ENSTNIG00000004104	fip1l1b	100	62.647	Tetraodon_nigroviridis
ENSAMXG00000011126	fip1l1b	63	63.731	ENSVPAG00000011574	-	76	63.731	Vicugna_pacos
ENSAMXG00000011126	fip1l1b	89	57.117	ENSXCOG00000013656	fip1l1b	100	54.011	Xiphophorus_couchianus
ENSAMXG00000011126	fip1l1b	89	70.103	ENSXMAG00000017620	fip1l1b	56	68.098	Xiphophorus_maculatus