EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000011227 (Gene tree)
Gene ID: 103034185
Gene Symbol: smarca1
Alias: si:dkey-148b12.1
Full Name: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 27656 bases
Position: chrAPWO02002319.1:5815-33470
Accession: 103034185
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000045378	ResIII	PF04851.15	1.3e-11	1	1
ENSAMXP00000053610	ResIII	PF04851.15	1.3e-11	1	1
ENSAMXP00000011533	ResIII	PF04851.15	1.3e-09	1	1
ENSAMXP00000053610	DEAD	PF00270.29	3e-06	1	1
ENSAMXP00000045378	DEAD	PF00270.29	3.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000011533	-	2508	-	ENSAMXP00000011533	835 (aa)	-	W5KVC1
ENSAMXT00000042429	-	4864	-	ENSAMXP00000053610	919 (aa)	-	-
ENSAMXT00000033224	-	3659	XM_007256397	ENSAMXP00000045378	932 (aa)	XP_007256459	-

Gene Model

Click here to download ENSAMXG00000011227's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000011227's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000011227	smarca1	99	86.007	ENSAMXG00000005709	smarca5	89	84.748
ENSAMXG00000011227	smarca1	53	32.008	ENSAMXG00000012777	rad54l	69	32.171
ENSAMXG00000011227	smarca1	55	43.165	ENSAMXG00000002088	hells	87	39.496
ENSAMXG00000011227	smarca1	62	43.654	ENSAMXG00000012367	chd1l	53	43.431
ENSAMXG00000011227	smarca1	50	36.820	ENSAMXG00000015470	smarcad1a	73	37.143
ENSAMXG00000011227	smarca1	50	37.395	ENSAMXG00000019130	smarcad1b	54	38.492
ENSAMXG00000011227	smarca1	51	32.340	ENSAMXG00000039985	rad54b	69	31.845

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000011227	smarca1	99	90.182	ENSG00000102038	SMARCA1	88	88.495	Homo_sapiens
ENSAMXG00000011227	smarca1	99	85.645	ENSAPOG00000016035	smarca5	98	84.447	Acanthochromis_polyacanthus
ENSAMXG00000011227	smarca1	99	88.769	ENSAMEG00000015218	SMARCA1	88	87.155	Ailuropoda_melanoleuca
ENSAMXG00000011227	smarca1	99	86.007	ENSACIG00000016982	smarca5	99	84.676	Amphilophus_citrinellus
ENSAMXG00000011227	smarca1	99	85.645	ENSAOCG00000015578	smarca5	90	84.425	Amphiprion_ocellaris
ENSAMXG00000011227	smarca1	99	85.645	ENSAPEG00000011117	smarca5	99	84.752	Amphiprion_percula
ENSAMXG00000011227	smarca1	99	86.128	ENSATEG00000012894	smarca5	90	85.590	Anabas_testudineus
ENSAMXG00000011227	smarca1	97	93.958	ENSAPLG00000013149	SMARCA1	94	91.935	Anas_platyrhynchos
ENSAMXG00000011227	smarca1	97	93.820	ENSACAG00000011376	SMARCA1	88	91.720	Anolis_carolinensis
ENSAMXG00000011227	smarca1	99	84.000	ENSANAG00000023098	SMARCA1	87	83.011	Aotus_nancymaae
ENSAMXG00000011227	smarca1	99	86.248	ENSACLG00000025356	smarca5	90	84.962	Astatotilapia_calliptera
ENSAMXG00000011227	smarca1	99	89.697	ENSBTAG00000002292	SMARCA1	86	87.789	Bos_taurus
ENSAMXG00000011227	smarca1	99	66.786	WBGene00002169	isw-1	88	66.073	Caenorhabditis_elegans
ENSAMXG00000011227	smarca1	99	90.182	ENSCJAG00000002868	SMARCA1	88	88.495	Callithrix_jacchus
ENSAMXG00000011227	smarca1	99	80.482	ENSCAFG00000018673	SMARCA1	99	79.929	Canis_familiaris
ENSAMXG00000011227	smarca1	99	90.182	ENSCAFG00020001751	SMARCA1	88	88.495	Canis_lupus_dingo
ENSAMXG00000011227	smarca1	99	89.818	ENSCHIG00000009837	SMARCA1	88	87.527	Capra_hircus
ENSAMXG00000011227	smarca1	99	90.424	ENSTSYG00000004240	SMARCA1	91	89.216	Carlito_syrichta
ENSAMXG00000011227	smarca1	99	89.576	ENSCPOG00000013601	SMARCA1	88	88.039	Cavia_porcellus
ENSAMXG00000011227	smarca1	99	86.909	ENSCCAG00000030817	SMARCA1	87	85.591	Cebus_capucinus
ENSAMXG00000011227	smarca1	99	89.784	ENSCATG00000015921	SMARCA1	88	88.889	Cercocebus_atys
ENSAMXG00000011227	smarca1	99	88.970	ENSCLAG00000002171	SMARCA1	88	87.419	Chinchilla_lanigera
ENSAMXG00000011227	smarca1	99	90.182	ENSCSAG00000008460	SMARCA1	88	88.495	Chlorocebus_sabaeus
ENSAMXG00000011227	smarca1	99	91.828	ENSCPBG00000001146	SMARCA1	88	91.828	Chrysemys_picta_bellii
ENSAMXG00000011227	smarca1	98	77.819	ENSCING00000004110	swi/snf	93	75.294	Ciona_intestinalis
ENSAMXG00000011227	smarca1	98	76.914	ENSCSAVG00000004620	-	99	75.700	Ciona_savignyi
ENSAMXG00000011227	smarca1	99	90.182	ENSCANG00000007183	SMARCA1	88	88.602	Colobus_angolensis_palliatus
ENSAMXG00000011227	smarca1	99	89.091	ENSCGRG00001010776	Smarca1	88	87.527	Cricetulus_griseus_chok1gshd
ENSAMXG00000011227	smarca1	99	88.462	ENSCGRG00000015301	Smarca1	91	87.691	Cricetulus_griseus_crigri
ENSAMXG00000011227	smarca1	99	85.525	ENSCSEG00000000328	smarca5	90	84.318	Cynoglossus_semilaevis
ENSAMXG00000011227	smarca1	99	85.163	ENSCVAG00000008668	smarca5	99	84.298	Cyprinodon_variegatus
ENSAMXG00000011227	smarca1	100	93.075	ENSDARG00000012776	smarca1	92	93.075	Danio_rerio
ENSAMXG00000011227	smarca1	99	85.283	ENSDARG00000052348	smarca5	90	84.103	Danio_rerio
ENSAMXG00000011227	smarca1	99	89.455	ENSDNOG00000004315	SMARCA1	86	88.629	Dasypus_novemcinctus
ENSAMXG00000011227	smarca1	99	88.462	ENSDORG00000009270	Smarca1	88	88.017	Dipodomys_ordii
ENSAMXG00000011227	smarca1	99	78.770	FBgn0011604	Iswi	93	75.235	Drosophila_melanogaster
ENSAMXG00000011227	smarca1	91	85.714	ENSETEG00000017426	SMARCA1	80	85.714	Echinops_telfairi
ENSAMXG00000011227	smarca1	99	84.485	ENSEBUG00000001239	smarca5	91	83.100	Eptatretus_burgeri
ENSAMXG00000011227	smarca1	98	87.105	ENSEASG00005008218	SMARCA1	94	83.761	Equus_asinus_asinus
ENSAMXG00000011227	smarca1	99	90.061	ENSECAG00000012106	SMARCA1	87	88.387	Equus_caballus
ENSAMXG00000011227	smarca1	81	92.737	ENSEEUG00000014927	SMARCA1	79	89.057	Erinaceus_europaeus
ENSAMXG00000011227	smarca1	100	94.332	ENSELUG00000010515	smarca1	92	94.332	Esox_lucius
ENSAMXG00000011227	smarca1	99	89.939	ENSFCAG00000018496	SMARCA1	88	88.280	Felis_catus
ENSAMXG00000011227	smarca1	95	93.561	ENSFALG00000000209	SMARCA1	94	92.369	Ficedula_albicollis
ENSAMXG00000011227	smarca1	99	87.915	ENSFDAG00000009818	SMARCA1	91	87.204	Fukomys_damarensis
ENSAMXG00000011227	smarca1	99	85.404	ENSFHEG00000007687	smarca5	91	85.548	Fundulus_heteroclitus
ENSAMXG00000011227	smarca1	97	93.958	ENSGALG00000008431	SMARCA1	89	92.865	Gallus_gallus
ENSAMXG00000011227	smarca1	99	85.525	ENSGAFG00000017731	smarca5	90	84.425	Gambusia_affinis
ENSAMXG00000011227	smarca1	99	91.828	ENSGAGG00000023575	SMARCA1	95	91.828	Gopherus_agassizii
ENSAMXG00000011227	smarca1	73	83.075	ENSGGOG00000012841	-	85	83.673	Gorilla_gorilla
ENSAMXG00000011227	smarca1	99	88.970	ENSHGLG00000003080	SMARCA1	88	87.204	Heterocephalus_glaber_female
ENSAMXG00000011227	smarca1	99	88.970	ENSHGLG00100001102	SMARCA1	93	87.204	Heterocephalus_glaber_male
ENSAMXG00000011227	smarca1	99	85.404	ENSHCOG00000005458	smarca5	90	84.318	Hippocampus_comes
ENSAMXG00000011227	smarca1	99	85.667	ENSIPUG00000005229	SMARCA5	92	84.855	Ictalurus_punctatus
ENSAMXG00000011227	smarca1	100	94.957	ENSIPUG00000016905	Smarca1	95	94.957	Ictalurus_punctatus
ENSAMXG00000011227	smarca1	99	90.061	ENSSTOG00000014524	SMARCA1	90	88.602	Ictidomys_tridecemlineatus
ENSAMXG00000011227	smarca1	99	89.346	ENSJJAG00000002593	Smarca1	88	88.344	Jaculus_jaculus
ENSAMXG00000011227	smarca1	99	85.525	ENSKMAG00000003777	smarca5	90	84.533	Kryptolebias_marmoratus
ENSAMXG00000011227	smarca1	99	84.922	ENSLBEG00000018112	smarca5	90	83.888	Labrus_bergylta
ENSAMXG00000011227	smarca1	95	85.335	ENSLBEG00000013295	SMARCA1	100	85.246	Labrus_bergylta
ENSAMXG00000011227	smarca1	99	93.576	ENSLACG00000016697	SMARCA1	91	91.828	Latimeria_chalumnae
ENSAMXG00000011227	smarca1	99	95.175	ENSLOCG00000014591	smarca1	91	93.910	Lepisosteus_oculatus
ENSAMXG00000011227	smarca1	99	90.061	ENSLAFG00000000896	SMARCA1	93	88.261	Loxodonta_africana
ENSAMXG00000011227	smarca1	99	90.182	ENSMFAG00000002117	SMARCA1	91	88.889	Macaca_fascicularis
ENSAMXG00000011227	smarca1	99	90.182	ENSMMUG00000008818	SMARCA1	93	89.298	Macaca_mulatta
ENSAMXG00000011227	smarca1	99	89.784	ENSMNEG00000041768	SMARCA1	91	88.889	Macaca_nemestrina
ENSAMXG00000011227	smarca1	99	90.182	ENSMLEG00000043198	SMARCA1	88	88.495	Mandrillus_leucophaeus
ENSAMXG00000011227	smarca1	99	86.007	ENSMAMG00000014294	smarca5	89	84.748	Mastacembelus_armatus
ENSAMXG00000011227	smarca1	99	86.248	ENSMZEG00005009369	smarca5	90	84.962	Maylandia_zebra
ENSAMXG00000011227	smarca1	99	90.658	ENSMGAG00000007042	SMARCA1	93	90.658	Meleagris_gallopavo
ENSAMXG00000011227	smarca1	99	89.062	ENSMAUG00000008133	Smarca1	87	88.126	Mesocricetus_auratus
ENSAMXG00000011227	smarca1	99	90.303	ENSMICG00000015768	SMARCA1	88	88.710	Microcebus_murinus
ENSAMXG00000011227	smarca1	99	89.333	ENSMOCG00000009464	Smarca1	88	86.774	Microtus_ochrogaster
ENSAMXG00000011227	smarca1	99	83.595	ENSMMOG00000005547	smarca5	93	82.492	Mola_mola
ENSAMXG00000011227	smarca1	97	93.588	ENSMODG00000013187	-	89	91.505	Monodelphis_domestica
ENSAMXG00000011227	smarca1	99	85.283	ENSMALG00000002081	smarca5	92	84.056	Monopterus_albus
ENSAMXG00000011227	smarca1	99	89.576	MGP_CAROLIEiJ_G0033034	Smarca1	87	88.344	Mus_caroli
ENSAMXG00000011227	smarca1	99	89.576	ENSMUSG00000031099	Smarca1	87	88.344	Mus_musculus
ENSAMXG00000011227	smarca1	99	89.455	MGP_PahariEiJ_G0031579	Smarca1	87	88.344	Mus_pahari
ENSAMXG00000011227	smarca1	99	89.576	MGP_SPRETEiJ_G0034192	Smarca1	87	88.344	Mus_spretus
ENSAMXG00000011227	smarca1	99	88.650	ENSMPUG00000017423	SMARCA1	83	87.155	Mustela_putorius_furo
ENSAMXG00000011227	smarca1	99	87.128	ENSMLUG00000029614	SMARCA1	88	85.805	Myotis_lucifugus
ENSAMXG00000011227	smarca1	99	89.543	ENSNGAG00000006492	Smarca1	87	88.562	Nannospalax_galili
ENSAMXG00000011227	smarca1	99	86.248	ENSNBRG00000004463	smarca5	93	84.962	Neolamprologus_brichardi
ENSAMXG00000011227	smarca1	99	89.062	ENSNLEG00000015179	SMARCA1	91	88.235	Nomascus_leucogenys
ENSAMXG00000011227	smarca1	95	81.890	ENSMEUG00000008819	SMARCA1	93	81.890	Notamacropus_eugenii
ENSAMXG00000011227	smarca1	99	87.796	ENSODEG00000012163	SMARCA1	88	87.097	Octodon_degus
ENSAMXG00000011227	smarca1	99	86.248	ENSONIG00000009993	smarca5	90	84.962	Oreochromis_niloticus
ENSAMXG00000011227	smarca1	97	93.958	ENSOANG00000002862	SMARCA1	95	91.828	Ornithorhynchus_anatinus
ENSAMXG00000011227	smarca1	99	90.061	ENSOCUG00000001047	SMARCA1	88	88.602	Oryctolagus_cuniculus
ENSAMXG00000011227	smarca1	99	85.766	ENSORLG00000021998	smarca5	89	84.640	Oryzias_latipes
ENSAMXG00000011227	smarca1	99	85.887	ENSORLG00020017679	smarca5	89	84.748	Oryzias_latipes_hni
ENSAMXG00000011227	smarca1	99	85.766	ENSORLG00015017210	smarca5	89	84.640	Oryzias_latipes_hsok
ENSAMXG00000011227	smarca1	99	85.887	ENSOMEG00000000086	smarca5	90	84.855	Oryzias_melastigma
ENSAMXG00000011227	smarca1	99	88.863	ENSOGAG00000004399	SMARCA1	86	88.449	Otolemur_garnettii
ENSAMXG00000011227	smarca1	99	89.818	ENSOARG00000014638	SMARCA1	95	88.280	Ovis_aries
ENSAMXG00000011227	smarca1	99	90.182	ENSPPAG00000034647	SMARCA1	88	88.495	Pan_paniscus
ENSAMXG00000011227	smarca1	99	90.061	ENSPPRG00000008929	SMARCA1	88	88.387	Panthera_pardus
ENSAMXG00000011227	smarca1	99	87.648	ENSPTIG00000000915	SMARCA1	91	86.272	Panthera_tigris_altaica
ENSAMXG00000011227	smarca1	99	90.182	ENSPTRG00000049876	SMARCA1	88	88.889	Pan_troglodytes
ENSAMXG00000011227	smarca1	99	90.182	ENSPANG00000003871	SMARCA1	88	88.495	Papio_anubis
ENSAMXG00000011227	smarca1	99	92.694	ENSPKIG00000013411	smarca1	93	92.694	Paramormyrops_kingsleyae
ENSAMXG00000011227	smarca1	99	92.043	ENSPSIG00000010101	SMARCA1	95	92.043	Pelodiscus_sinensis
ENSAMXG00000011227	smarca1	99	89.183	ENSPEMG00000017503	Smarca1	87	88.453	Peromyscus_maniculatus_bairdii
ENSAMXG00000011227	smarca1	99	93.486	ENSPCIG00000015460	SMARCA1	91	92.043	Phascolarctos_cinereus
ENSAMXG00000011227	smarca1	99	85.525	ENSPFOG00000007649	smarca5	90	84.533	Poecilia_formosa
ENSAMXG00000011227	smarca1	99	85.525	ENSPLAG00000003363	smarca5	90	84.533	Poecilia_latipinna
ENSAMXG00000011227	smarca1	99	85.645	ENSPMEG00000019849	smarca5	90	84.425	Poecilia_mexicana
ENSAMXG00000011227	smarca1	99	85.645	ENSPREG00000023250	smarca5	90	84.425	Poecilia_reticulata
ENSAMXG00000011227	smarca1	99	86.909	ENSPPYG00000020703	SMARCA1	88	85.591	Pongo_abelii
ENSAMXG00000011227	smarca1	82	90.323	ENSPCOG00000020722	SMARCA1	88	84.169	Propithecus_coquereli
ENSAMXG00000011227	smarca1	92	88.031	ENSPVAG00000003805	SMARCA1	86	81.408	Pteropus_vampyrus
ENSAMXG00000011227	smarca1	59	87.342	ENSPNYG00000012299	smarca5	82	87.342	Pundamilia_nyererei
ENSAMXG00000011227	smarca1	99	89.091	ENSRNOG00000003762	Smarca1	88	87.527	Rattus_norvegicus
ENSAMXG00000011227	smarca1	99	90.182	ENSRROG00000034167	SMARCA1	88	88.602	Rhinopithecus_roxellana
ENSAMXG00000011227	smarca1	99	90.182	ENSSBOG00000020641	SMARCA1	95	88.495	Saimiri_boliviensis_boliviensis
ENSAMXG00000011227	smarca1	99	85.269	ENSSHAG00000013518	SMARCA1	95	85.269	Sarcophilus_harrisii
ENSAMXG00000011227	smarca1	99	85.887	ENSSFOG00015016794	smarca5	96	84.640	Scleropages_formosus
ENSAMXG00000011227	smarca1	99	95.537	ENSSFOG00015009043	smarca1	92	94.231	Scleropages_formosus
ENSAMXG00000011227	smarca1	99	85.163	ENSSMAG00000004801	smarca5	90	83.996	Scophthalmus_maximus
ENSAMXG00000011227	smarca1	99	85.525	ENSSDUG00000020690	smarca5	90	84.425	Seriola_dumerili
ENSAMXG00000011227	smarca1	99	85.525	ENSSLDG00000025190	smarca5	90	84.425	Seriola_lalandi_dorsalis
ENSAMXG00000011227	smarca1	90	90.233	ENSSARG00000000842	SMARCA1	83	88.968	Sorex_araneus
ENSAMXG00000011227	smarca1	100	91.658	ENSSPUG00000000590	SMARCA1	89	91.658	Sphenodon_punctatus
ENSAMXG00000011227	smarca1	99	85.766	ENSSPAG00000002894	smarca5	96	84.556	Stegastes_partitus
ENSAMXG00000011227	smarca1	99	89.818	ENSSSCG00000012649	SMARCA1	90	88.172	Sus_scrofa
ENSAMXG00000011227	smarca1	97	93.711	ENSTGUG00000003899	-	94	91.398	Taeniopygia_guttata
ENSAMXG00000011227	smarca1	99	85.525	ENSTRUG00000014094	smarca5	90	84.318	Takifugu_rubripes
ENSAMXG00000011227	smarca1	99	85.887	ENSTNIG00000017717	smarca5	87	84.666	Tetraodon_nigroviridis
ENSAMXG00000011227	smarca1	98	88.313	ENSTBEG00000014973	SMARCA1	91	86.813	Tupaia_belangeri
ENSAMXG00000011227	smarca1	99	84.834	ENSTTRG00000006168	SMARCA1	94	84.409	Tursiops_truncatus
ENSAMXG00000011227	smarca1	99	89.818	ENSUAMG00000020201	SMARCA1	88	88.065	Ursus_americanus
ENSAMXG00000011227	smarca1	99	85.212	ENSUMAG00000004073	SMARCA1	92	84.086	Ursus_maritimus
ENSAMXG00000011227	smarca1	80	90.064	ENSVPAG00000010492	-	76	90.064	Vicugna_pacos
ENSAMXG00000011227	smarca1	99	90.182	ENSVVUG00000008878	SMARCA1	93	89.298	Vulpes_vulpes
ENSAMXG00000011227	smarca1	99	92.039	ENSXETG00000001526	smarca1	92	91.366	Xenopus_tropicalis
ENSAMXG00000011227	smarca1	99	85.404	ENSXCOG00000011170	smarca5	92	84.318	Xiphophorus_couchianus
ENSAMXG00000011227	smarca1	99	85.525	ENSXMAG00000009678	smarca5	98	84.825	Xiphophorus_maculatus