EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000011236 (Gene tree)
Gene ID: 103044088
Gene Symbol: bms1
Alias: bms1l|im:7152071|wu:fb37d08
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 21843 bases
Position: chr4:4110447-4132289
Accession: 103044088
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000011760	AARP2CN	PF08142.12	5.4e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000011760	-	3768	XM_022668931	ENSAMXP00000011760	1255 (aa)	XP_022524652	W5KVZ8

Gene Model

Click here to download ENSAMXG00000011236's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000011236's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000011236	bms1	51	66.199	ENSG00000165733	BMS1	82	73.103	Homo_sapiens
ENSAMXG00000011236	bms1	73	77.316	ENSAPOG00000002296	bms1	94	76.358	Acanthochromis_polyacanthus
ENSAMXG00000011236	bms1	90	87.228	ENSACIG00000002588	bms1	92	75.520	Amphilophus_citrinellus
ENSAMXG00000011236	bms1	50	77.316	ENSAOCG00000018088	bms1	51	76.886	Amphiprion_ocellaris
ENSAMXG00000011236	bms1	50	77.440	ENSAPEG00000014673	bms1	51	76.160	Amphiprion_percula
ENSAMXG00000011236	bms1	93	76.630	ENSATEG00000023465	bms1	51	76.236	Anabas_testudineus
ENSAMXG00000011236	bms1	50	65.865	ENSANAG00000023432	BMS1	82	72.477	Aotus_nancymaae
ENSAMXG00000011236	bms1	97	69.951	ENSACLG00000001294	bms1	93	76.645	Astatotilapia_calliptera
ENSAMXG00000011236	bms1	82	52.323	WBGene00022021	Y61A9LA.10	88	54.497	Caenorhabditis_elegans
ENSAMXG00000011236	bms1	51	60.401	ENSCAPG00000008652	BMS1	82	71.101	Cavia_aperea
ENSAMXG00000011236	bms1	89	44.872	ENSCATG00000008695	-	71	54.757	Cercocebus_atys
ENSAMXG00000011236	bms1	51	65.533	ENSCATG00000030625	-	88	66.453	Cercocebus_atys
ENSAMXG00000011236	bms1	99	61.374	ENSCPBG00000025581	BMS1	81	74.371	Chrysemys_picta_bellii
ENSAMXG00000011236	bms1	80	61.250	ENSCING00000003181	-	93	62.533	Ciona_intestinalis
ENSAMXG00000011236	bms1	72	52.632	ENSCSAVG00000004113	-	88	51.872	Ciona_savignyi
ENSAMXG00000011236	bms1	51	65.997	ENSCANG00000011609	BMS1	88	66.613	Colobus_angolensis_palliatus
ENSAMXG00000011236	bms1	99	68.316	ENSCSEG00000002469	bms1	50	74.799	Cynoglossus_semilaevis
ENSAMXG00000011236	bms1	50	76.763	ENSCVAG00000008371	bms1	52	76.763	Cyprinodon_variegatus
ENSAMXG00000011236	bms1	99	75.059	ENSDARG00000054154	bms1	91	76.515	Danio_rerio
ENSAMXG00000011236	bms1	80	61.155	FBgn0036686	CG7728	89	60.836	Drosophila_melanogaster
ENSAMXG00000011236	bms1	51	65.373	ENSECAG00000001358	BMS1	81	72.248	Equus_caballus
ENSAMXG00000011236	bms1	100	71.339	ENSELUG00000001756	bms1	76	84.282	Esox_lucius
ENSAMXG00000011236	bms1	100	62.311	ENSFALG00000006882	BMS1	81	74.600	Ficedula_albicollis
ENSAMXG00000011236	bms1	99	60.415	ENSFDAG00000001422	BMS1	83	72.018	Fukomys_damarensis
ENSAMXG00000011236	bms1	89	76.726	ENSFHEG00000003367	bms1	95	76.886	Fundulus_heteroclitus
ENSAMXG00000011236	bms1	94	72.154	ENSGMOG00000000718	bms1	88	79.506	Gadus_morhua
ENSAMXG00000011236	bms1	99	61.850	ENSGALG00000002624	BMS1	81	75.632	Gallus_gallus
ENSAMXG00000011236	bms1	92	76.471	ENSGACG00000015334	bms1	88	76.115	Gasterosteus_aculeatus
ENSAMXG00000011236	bms1	100	63.373	ENSGAGG00000003467	BMS1	81	73.103	Gopherus_agassizii
ENSAMXG00000011236	bms1	97	70.228	ENSHBUG00000022628	bms1	93	76.809	Haplochromis_burtoni
ENSAMXG00000011236	bms1	98	72.233	ENSHCOG00000017604	bms1	52	76.083	Hippocampus_comes
ENSAMXG00000011236	bms1	100	78.414	ENSIPUG00000017855	bms1	77	88.865	Ictalurus_punctatus
ENSAMXG00000011236	bms1	59	72.253	ENSKMAG00000021982	bms1	80	78.738	Kryptolebias_marmoratus
ENSAMXG00000011236	bms1	52	73.263	ENSLOCG00000012914	bms1	51	75.316	Lepisosteus_oculatus
ENSAMXG00000011236	bms1	51	63.777	ENSLAFG00000006250	BMS1	82	72.018	Loxodonta_africana
ENSAMXG00000011236	bms1	85	65.537	ENSMFAG00000037771	BMS1	96	65.028	Macaca_fascicularis
ENSAMXG00000011236	bms1	74	53.623	ENSMLEG00000029084	-	78	53.623	Mandrillus_leucophaeus
ENSAMXG00000011236	bms1	100	68.110	ENSMAMG00000020855	bms1	50	77.011	Mastacembelus_armatus
ENSAMXG00000011236	bms1	97	69.951	ENSMZEG00005005663	bms1	93	76.645	Maylandia_zebra
ENSAMXG00000011236	bms1	95	61.624	ENSMGAG00000001170	BMS1	50	67.732	Meleagris_gallopavo
ENSAMXG00000011236	bms1	51	65.278	ENSMOCG00000002038	Bms1	88	66.774	Microtus_ochrogaster
ENSAMXG00000011236	bms1	100	71.347	ENSMMOG00000000977	bms1	98	70.398	Mola_mola
ENSAMXG00000011236	bms1	99	70.635	ENSMALG00000009680	bms1	52	75.598	Monopterus_albus
ENSAMXG00000011236	bms1	72	74.055	MGP_CAROLIEiJ_G0028785	-	76	73.415	Mus_caroli
ENSAMXG00000011236	bms1	50	65.385	MGP_PahariEiJ_G0022539	Bms1	82	72.248	Mus_pahari
ENSAMXG00000011236	bms1	86	65.971	ENSNGAG00000015258	Bms1	84	66.077	Nannospalax_galili
ENSAMXG00000011236	bms1	82	74.272	ENSOPRG00000005195	BMS1	79	74.272	Ochotona_princeps
ENSAMXG00000011236	bms1	100	69.261	ENSONIG00000007227	bms1	94	76.568	Oreochromis_niloticus
ENSAMXG00000011236	bms1	51	65.191	ENSOANG00000000662	-	82	73.864	Ornithorhynchus_anatinus
ENSAMXG00000011236	bms1	50	66.667	ENSOCUG00000005354	BMS1	82	72.706	Oryctolagus_cuniculus
ENSAMXG00000011236	bms1	91	76.367	ENSORLG00000014655	bms1	52	76.206	Oryzias_latipes
ENSAMXG00000011236	bms1	91	75.801	ENSORLG00020016246	bms1	92	75.321	Oryzias_latipes_hni
ENSAMXG00000011236	bms1	91	75.321	ENSORLG00015014183	bms1	87	70.992	Oryzias_latipes_hsok
ENSAMXG00000011236	bms1	50	76.923	ENSOMEG00000015042	bms1	52	76.763	Oryzias_melastigma
ENSAMXG00000011236	bms1	51	60.342	ENSPPAG00000027837	BMS1	82	72.874	Pan_paniscus
ENSAMXG00000011236	bms1	51	66.199	ENSPTRG00000002441	BMS1	82	72.874	Pan_troglodytes
ENSAMXG00000011236	bms1	50	76.115	ENSPKIG00000008165	bms1	81	80.778	Paramormyrops_kingsleyae
ENSAMXG00000011236	bms1	100	61.621	ENSPSIG00000006481	BMS1	81	74.828	Pelodiscus_sinensis
ENSAMXG00000011236	bms1	66	67.213	ENSPCIG00000001339	BMS1	80	68.058	Phascolarctos_cinereus
ENSAMXG00000011236	bms1	81	74.960	ENSPFOG00000015180	bms1	58	75.444	Poecilia_formosa
ENSAMXG00000011236	bms1	71	72.109	ENSPCAG00000014528	BMS1	61	72.414	Procavia_capensis
ENSAMXG00000011236	bms1	51	61.669	ENSPCOG00000023834	-	80	73.670	Propithecus_coquereli
ENSAMXG00000011236	bms1	100	69.865	ENSPNYG00000018866	bms1	86	72.212	Pundamilia_nyererei
ENSAMXG00000011236	bms1	75	65.848	ENSRNOG00000006576	Bms1	79	71.789	Rattus_norvegicus
ENSAMXG00000011236	bms1	51	65.688	ENSRROG00000040101	BMS1	87	66.292	Rhinopithecus_roxellana
ENSAMXG00000011236	bms1	71	48.284	YPL217C	-	77	49.626	Saccharomyces_cerevisiae
ENSAMXG00000011236	bms1	50	66.827	ENSSBOG00000035778	BMS1	82	72.706	Saimiri_boliviensis_boliviensis
ENSAMXG00000011236	bms1	51	64.571	ENSSHAG00000005062	BMS1	87	66.506	Sarcophilus_harrisii
ENSAMXG00000011236	bms1	100	69.020	ENSSMAG00000019966	bms1	51	75.911	Scophthalmus_maximus
ENSAMXG00000011236	bms1	64	61.996	ENSSARG00000014407	BMS1	66	72.000	Sorex_araneus
ENSAMXG00000011236	bms1	50	68.088	ENSSPUG00000014454	BMS1	82	73.394	Sphenodon_punctatus
ENSAMXG00000011236	bms1	99	61.966	ENSTGUG00000006302	-	81	74.828	Taeniopygia_guttata
ENSAMXG00000011236	bms1	92	69.111	ENSTRUG00000008028	bms1	88	76.498	Takifugu_rubripes
ENSAMXG00000011236	bms1	95	70.323	ENSTNIG00000006216	bms1	82	75.455	Tetraodon_nigroviridis
ENSAMXG00000011236	bms1	62	69.697	ENSTBEG00000001673	-	64	67.638	Tupaia_belangeri
ENSAMXG00000011236	bms1	94	65.325	ENSTTRG00000007983	BMS1	79	75.306	Tursiops_truncatus
ENSAMXG00000011236	bms1	98	60.987	ENSXETG00000008158	bms1	86	69.565	Xenopus_tropicalis
ENSAMXG00000011236	bms1	89	74.089	ENSXCOG00000000506	bms1	96	81.907	Xiphophorus_couchianus
ENSAMXG00000011236	bms1	50	74.920	ENSXMAG00000014236	bms1	53	75.402	Xiphophorus_maculatus