EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000011238 (Gene tree)
Gene ID: 103032158
Gene Symbol: -
Alias: -
Full Name: transcription activator BRG1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 39589 bases
Position: chr13:20055319-20094907
Accession: 103032158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000011579	ResIII	PF04851.15	4.5e-08	1	1
ENSAMXP00000033367	ResIII	PF04851.15	5.3e-08	1	1
ENSAMXP00000011579	BRK	PF07533.16	7.2e-17	1	1
ENSAMXP00000033367	BRK	PF07533.16	8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000045183	-	9910	XM_022675075	ENSAMXP00000033367	1549 (aa)	XP_022530796	-
ENSAMXT00000011579	-	4143	-	ENSAMXP00000011579	1380 (aa)	-	W5KVG7

Gene Model

Click here to download ENSAMXG00000011238's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000011238's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000011238	-	99	74.441	ENSAMXG00000012404	smarca2	92	73.294
ENSAMXG00000011238	-	99	85.867	ENSAMXG00000021023	smarca4a	95	83.898

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000011238	-	98	87.109	ENSG00000127616	SMARCA4	100	91.460	Homo_sapiens
ENSAMXG00000011238	-	100	90.237	ENSAPOG00000004542	SMARCA4	100	91.098	Acanthochromis_polyacanthus
ENSAMXG00000011238	-	78	89.184	ENSAPOG00000003509	smarca4a	92	89.433	Acanthochromis_polyacanthus
ENSAMXG00000011238	-	98	83.062	ENSAMEG00000010868	SMARCA4	94	83.323	Ailuropoda_melanoleuca
ENSAMXG00000011238	-	96	90.855	ENSACIG00000003035	-	96	87.442	Amphilophus_citrinellus
ENSAMXG00000011238	-	94	87.112	ENSACIG00000021550	smarca4a	93	87.492	Amphilophus_citrinellus
ENSAMXG00000011238	-	98	88.802	ENSAOCG00000009450	-	97	89.419	Amphiprion_ocellaris
ENSAMXG00000011238	-	96	86.815	ENSAOCG00000019167	smarca4a	99	87.482	Amphiprion_ocellaris
ENSAMXG00000011238	-	99	89.139	ENSAPEG00000023108	-	93	85.921	Amphiprion_percula
ENSAMXG00000011238	-	96	86.889	ENSAPEG00000015559	smarca4a	99	87.553	Amphiprion_percula
ENSAMXG00000011238	-	100	86.744	ENSATEG00000001094	-	98	87.329	Anabas_testudineus
ENSAMXG00000011238	-	94	87.483	ENSATEG00000011524	smarca4a	94	87.703	Anabas_testudineus
ENSAMXG00000011238	-	98	86.931	ENSANAG00000036991	SMARCA4	94	84.003	Aotus_nancymaae
ENSAMXG00000011238	-	96	85.611	ENSACLG00000000163	smarca4a	95	87.378	Astatotilapia_calliptera
ENSAMXG00000011238	-	96	89.243	ENSACLG00000008638	-	97	86.476	Astatotilapia_calliptera
ENSAMXG00000011238	-	98	87.835	ENSBTAG00000019220	SMARCA4	94	87.524	Bos_taurus
ENSAMXG00000011238	-	96	90.570	ENSCJAG00000005936	SMARCA4	88	91.793	Callithrix_jacchus
ENSAMXG00000011238	-	98	87.174	ENSCAFG00000017584	SMARCA4	94	87.378	Canis_familiaris
ENSAMXG00000011238	-	98	87.174	ENSCAFG00020024620	SMARCA4	95	85.761	Canis_lupus_dingo
ENSAMXG00000011238	-	98	83.736	ENSCHIG00000015318	SMARCA4	94	83.562	Capra_hircus
ENSAMXG00000011238	-	98	87.369	ENSTSYG00000012966	SMARCA4	94	87.312	Carlito_syrichta
ENSAMXG00000011238	-	99	83.381	ENSCAPG00000015932	SMARCA4	95	90.009	Cavia_aperea
ENSAMXG00000011238	-	98	86.979	ENSCPOG00000015549	SMARCA4	94	87.410	Cavia_porcellus
ENSAMXG00000011238	-	98	84.625	ENSCCAG00000031660	SMARCA4	92	84.831	Cebus_capucinus
ENSAMXG00000011238	-	98	87.109	ENSCATG00000029530	SMARCA4	94	87.313	Cercocebus_atys
ENSAMXG00000011238	-	98	87.565	ENSCLAG00000011946	SMARCA4	94	87.738	Chinchilla_lanigera
ENSAMXG00000011238	-	98	86.645	ENSCPBG00000009994	SMARCA4	94	86.727	Chrysemys_picta_bellii
ENSAMXG00000011238	-	98	87.044	ENSCANG00000036013	SMARCA4	94	87.248	Colobus_angolensis_palliatus
ENSAMXG00000011238	-	98	86.784	ENSCGRG00001016732	Smarca4	94	87.053	Cricetulus_griseus_chok1gshd
ENSAMXG00000011238	-	98	86.784	ENSCGRG00000017242	Smarca4	94	87.053	Cricetulus_griseus_crigri
ENSAMXG00000011238	-	94	86.216	ENSCSEG00000014771	smarca4a	94	86.532	Cynoglossus_semilaevis
ENSAMXG00000011238	-	94	86.336	ENSCVAG00000006979	smarca4a	94	86.207	Cyprinodon_variegatus
ENSAMXG00000011238	-	98	88.940	ENSCVAG00000003018	-	96	89.012	Cyprinodon_variegatus
ENSAMXG00000011238	-	95	89.363	ENSDARG00000104339	SMARCA4	94	89.113	Danio_rerio
ENSAMXG00000011238	-	95	88.299	ENSDARG00000077226	smarca4a	94	88.694	Danio_rerio
ENSAMXG00000011238	-	94	84.266	ENSDNOG00000048847	SMARCA4	88	91.823	Dasypus_novemcinctus
ENSAMXG00000011238	-	95	78.386	ENSDORG00000002544	Smarca4	91	82.127	Dipodomys_ordii
ENSAMXG00000011238	-	98	75.800	ENSETEG00000013361	SMARCA4	94	75.448	Echinops_telfairi
ENSAMXG00000011238	-	98	86.784	ENSEASG00005006167	SMARCA4	92	87.019	Equus_asinus_asinus
ENSAMXG00000011238	-	98	86.849	ENSECAG00000008334	SMARCA4	94	87.084	Equus_caballus
ENSAMXG00000011238	-	99	82.783	ENSELUG00000023232	-	93	80.221	Esox_lucius
ENSAMXG00000011238	-	99	87.482	ENSELUG00000010247	smarca4a	94	87.370	Esox_lucius
ENSAMXG00000011238	-	98	86.940	ENSFCAG00000004894	SMARCA4	94	87.143	Felis_catus
ENSAMXG00000011238	-	79	92.000	ENSFALG00000004208	SMARCA4	94	83.290	Ficedula_albicollis
ENSAMXG00000011238	-	99	84.218	ENSFDAG00000012237	SMARCA4	97	87.316	Fukomys_damarensis
ENSAMXG00000011238	-	96	86.101	ENSFHEG00000010182	smarca4a	96	85.930	Fundulus_heteroclitus
ENSAMXG00000011238	-	96	89.774	ENSFHEG00000007902	-	93	86.367	Fundulus_heteroclitus
ENSAMXG00000011238	-	89	85.517	ENSGMOG00000005756	-	89	84.686	Gadus_morhua
ENSAMXG00000011238	-	88	83.214	ENSGMOG00000002649	smarca4a	87	86.017	Gadus_morhua
ENSAMXG00000011238	-	81	83.572	ENSGALG00000047145	SMARCA4	100	85.774	Gallus_gallus
ENSAMXG00000011238	-	99	86.237	ENSGAFG00000008827	-	93	84.287	Gambusia_affinis
ENSAMXG00000011238	-	88	88.583	ENSGAFG00000014900	smarca4a	91	88.766	Gambusia_affinis
ENSAMXG00000011238	-	98	85.696	ENSGACG00000006691	smarca4a	94	85.891	Gasterosteus_aculeatus
ENSAMXG00000011238	-	98	83.755	ENSGACG00000016033	-	95	82.606	Gasterosteus_aculeatus
ENSAMXG00000011238	-	98	86.945	ENSGAGG00000016757	SMARCA4	94	87.027	Gopherus_agassizii
ENSAMXG00000011238	-	98	87.109	ENSGGOG00000009882	SMARCA4	94	87.313	Gorilla_gorilla
ENSAMXG00000011238	-	96	89.318	ENSHBUG00000005447	-	96	87.705	Haplochromis_burtoni
ENSAMXG00000011238	-	96	85.683	ENSHBUG00000021172	smarca4a	94	87.565	Haplochromis_burtoni
ENSAMXG00000011238	-	98	86.714	ENSHGLG00000010519	SMARCA4	94	87.013	Heterocephalus_glaber_female
ENSAMXG00000011238	-	98	86.662	ENSHGLG00100013774	SMARCA4	94	86.906	Heterocephalus_glaber_male
ENSAMXG00000011238	-	94	87.339	ENSHCOG00000009510	smarca4a	95	87.370	Hippocampus_comes
ENSAMXG00000011238	-	96	94.737	ENSIPUG00000016346	-	94	93.680	Ictalurus_punctatus
ENSAMXG00000011238	-	95	87.844	ENSIPUG00000006107	smarca4a	94	88.312	Ictalurus_punctatus
ENSAMXG00000011238	-	98	87.044	ENSSTOG00000007939	SMARCA4	94	87.280	Ictidomys_tridecemlineatus
ENSAMXG00000011238	-	98	84.816	ENSJJAG00000012877	Smarca4	94	84.841	Jaculus_jaculus
ENSAMXG00000011238	-	99	88.025	ENSKMAG00000019518	-	96	89.143	Kryptolebias_marmoratus
ENSAMXG00000011238	-	96	85.526	ENSKMAG00000011931	smarca4a	94	87.057	Kryptolebias_marmoratus
ENSAMXG00000011238	-	96	84.470	ENSLBEG00000017383	smarca4a	96	83.442	Labrus_bergylta
ENSAMXG00000011238	-	96	91.020	ENSLBEG00000020655	-	94	77.303	Labrus_bergylta
ENSAMXG00000011238	-	54	81.538	ENSLACG00000015309	SMARCA4	100	80.992	Latimeria_chalumnae
ENSAMXG00000011238	-	95	85.098	ENSLOCG00000007820	smarca4a	94	85.052	Lepisosteus_oculatus
ENSAMXG00000011238	-	98	86.940	ENSLAFG00000001433	SMARCA4	94	87.143	Loxodonta_africana
ENSAMXG00000011238	-	98	87.109	ENSMFAG00000032146	SMARCA4	93	87.313	Macaca_fascicularis
ENSAMXG00000011238	-	98	87.109	ENSMMUG00000012042	SMARCA4	94	87.313	Macaca_mulatta
ENSAMXG00000011238	-	98	87.093	ENSMNEG00000028512	SMARCA4	94	87.296	Macaca_nemestrina
ENSAMXG00000011238	-	98	87.174	ENSMLEG00000034976	SMARCA4	94	87.078	Mandrillus_leucophaeus
ENSAMXG00000011238	-	96	85.912	ENSMAMG00000009256	smarca4a	94	87.378	Mastacembelus_armatus
ENSAMXG00000011238	-	99	90.156	ENSMAMG00000002841	-	97	89.311	Mastacembelus_armatus
ENSAMXG00000011238	-	95	89.092	ENSMZEG00005023861	-	97	87.148	Maylandia_zebra
ENSAMXG00000011238	-	96	85.683	ENSMZEG00005003889	smarca4a	94	87.443	Maylandia_zebra
ENSAMXG00000011238	-	98	86.485	ENSMAUG00000020731	Smarca4	94	86.753	Mesocricetus_auratus
ENSAMXG00000011238	-	98	86.810	ENSMICG00000009806	SMARCA4	94	87.013	Microcebus_murinus
ENSAMXG00000011238	-	98	86.485	ENSMOCG00000022209	Smarca4	94	86.883	Microtus_ochrogaster
ENSAMXG00000011238	-	96	88.033	ENSMMOG00000008466	-	93	84.283	Mola_mola
ENSAMXG00000011238	-	94	85.617	ENSMMOG00000007571	smarca4a	97	85.547	Mola_mola
ENSAMXG00000011238	-	98	84.796	ENSMODG00000006287	SMARCA4	94	84.694	Monodelphis_domestica
ENSAMXG00000011238	-	94	87.153	ENSMALG00000003388	smarca4a	94	87.256	Monopterus_albus
ENSAMXG00000011238	-	96	89.294	ENSMALG00000021534	-	100	89.222	Monopterus_albus
ENSAMXG00000011238	-	98	86.849	MGP_CAROLIEiJ_G0031879	Smarca4	100	86.546	Mus_caroli
ENSAMXG00000011238	-	98	86.849	ENSMUSG00000032187	Smarca4	99	86.546	Mus_musculus
ENSAMXG00000011238	-	98	86.906	MGP_PahariEiJ_G0014745	Smarca4	100	86.877	Mus_pahari
ENSAMXG00000011238	-	98	86.849	MGP_SPRETEiJ_G0033003	Smarca4	100	86.546	Mus_spretus
ENSAMXG00000011238	-	98	87.109	ENSMPUG00000005711	SMARCA4	94	87.313	Mustela_putorius_furo
ENSAMXG00000011238	-	98	86.827	ENSMLUG00000004491	-	94	87.378	Myotis_lucifugus
ENSAMXG00000011238	-	98	86.792	ENSNGAG00000021852	Smarca4	94	87.215	Nannospalax_galili
ENSAMXG00000011238	-	96	89.474	ENSNBRG00000018865	-	100	89.594	Neolamprologus_brichardi
ENSAMXG00000011238	-	96	87.315	ENSNBRG00000011457	smarca4a	95	84.756	Neolamprologus_brichardi
ENSAMXG00000011238	-	99	83.391	ENSNLEG00000012389	SMARCA4	93	83.865	Nomascus_leucogenys
ENSAMXG00000011238	-	91	82.759	ENSOPRG00000000885	-	76	82.759	Ochotona_princeps
ENSAMXG00000011238	-	99	84.889	ENSODEG00000017127	SMARCA4	94	84.906	Octodon_degus
ENSAMXG00000011238	-	94	88.215	ENSONIG00000008196	smarca4a	94	87.908	Oreochromis_niloticus
ENSAMXG00000011238	-	98	87.612	ENSONIG00000018040	-	94	87.340	Oreochromis_niloticus
ENSAMXG00000011238	-	98	82.384	ENSOCUG00000001787	SMARCA4	94	81.895	Oryctolagus_cuniculus
ENSAMXG00000011238	-	94	86.132	ENSORLG00000015452	smarca4a	94	86.792	Oryzias_latipes
ENSAMXG00000011238	-	96	87.221	ENSORLG00000003955	-	99	87.028	Oryzias_latipes
ENSAMXG00000011238	-	96	87.231	ENSORLG00020009728	-	98	87.179	Oryzias_latipes_hni
ENSAMXG00000011238	-	96	84.718	ENSORLG00020004611	smarca4a	99	85.265	Oryzias_latipes_hni
ENSAMXG00000011238	-	94	85.792	ENSORLG00015016560	smarca4a	98	84.981	Oryzias_latipes_hsok
ENSAMXG00000011238	-	100	86.757	ENSORLG00015007739	-	97	87.268	Oryzias_latipes_hsok
ENSAMXG00000011238	-	94	86.580	ENSOMEG00000007486	smarca4a	94	87.435	Oryzias_melastigma
ENSAMXG00000011238	-	95	89.812	ENSOMEG00000016626	-	94	87.054	Oryzias_melastigma
ENSAMXG00000011238	-	99	79.156	ENSOGAG00000016148	SMARCA4	100	85.695	Otolemur_garnettii
ENSAMXG00000011238	-	96	87.936	ENSOARG00000017454	SMARCA4	94	87.206	Ovis_aries
ENSAMXG00000011238	-	98	87.109	ENSPPAG00000043191	SMARCA4	94	87.313	Pan_paniscus
ENSAMXG00000011238	-	98	86.940	ENSPPRG00000000064	SMARCA4	94	87.143	Panthera_pardus
ENSAMXG00000011238	-	81	87.197	ENSPTIG00000017447	SMARCA4	94	81.621	Panthera_tigris_altaica
ENSAMXG00000011238	-	98	87.109	ENSPTRG00000010488	SMARCA4	94	87.313	Pan_troglodytes
ENSAMXG00000011238	-	98	87.223	ENSPANG00000011042	SMARCA4	93	87.427	Papio_anubis
ENSAMXG00000011238	-	94	89.726	ENSPKIG00000010087	-	94	88.780	Paramormyrops_kingsleyae
ENSAMXG00000011238	-	95	88.881	ENSPKIG00000007770	SMARCA4	94	88.231	Paramormyrops_kingsleyae
ENSAMXG00000011238	-	98	80.940	ENSPSIG00000005547	SMARCA4	94	80.304	Pelodiscus_sinensis
ENSAMXG00000011238	-	98	86.680	ENSPEMG00000020389	Smarca4	94	86.948	Peromyscus_maniculatus_bairdii
ENSAMXG00000011238	-	98	86.558	ENSPCIG00000017138	SMARCA4	94	87.044	Phascolarctos_cinereus
ENSAMXG00000011238	-	94	85.044	ENSPFOG00000007892	smarca4a	94	85.492	Poecilia_formosa
ENSAMXG00000011238	-	98	86.078	ENSPFOG00000012930	-	94	86.785	Poecilia_formosa
ENSAMXG00000011238	-	84	93.504	ENSPLAG00000018616	-	93	88.787	Poecilia_latipinna
ENSAMXG00000011238	-	96	86.848	ENSPLAG00000014294	smarca4a	94	85.557	Poecilia_latipinna
ENSAMXG00000011238	-	99	89.176	ENSPMEG00000008929	-	95	87.404	Poecilia_mexicana
ENSAMXG00000011238	-	94	89.728	ENSPMEG00000003725	smarca4a	95	85.168	Poecilia_mexicana
ENSAMXG00000011238	-	96	82.957	ENSPREG00000014608	smarca4a	95	85.308	Poecilia_reticulata
ENSAMXG00000011238	-	99	86.242	ENSPREG00000014823	-	95	86.713	Poecilia_reticulata
ENSAMXG00000011238	-	98	84.943	ENSPPYG00000009568	SMARCA4	94	84.841	Pongo_abelii
ENSAMXG00000011238	-	78	91.549	ENSPCAG00000014054	SMARCA4	72	91.549	Procavia_capensis
ENSAMXG00000011238	-	98	86.979	ENSPCOG00000023011	SMARCA4	94	87.013	Propithecus_coquereli
ENSAMXG00000011238	-	93	78.584	ENSPVAG00000007787	SMARCA4	89	79.024	Pteropus_vampyrus
ENSAMXG00000011238	-	96	87.827	ENSPNYG00000000717	smarca4a	95	87.500	Pundamilia_nyererei
ENSAMXG00000011238	-	96	90.330	ENSPNYG00000023995	-	96	87.245	Pundamilia_nyererei
ENSAMXG00000011238	-	99	85.714	ENSPNAG00000024136	smarca4a	93	84.369	Pygocentrus_nattereri
ENSAMXG00000011238	-	100	97.681	ENSPNAG00000006636	-	96	97.962	Pygocentrus_nattereri
ENSAMXG00000011238	-	98	86.914	ENSRNOG00000009271	Smarca4	94	87.118	Rattus_norvegicus
ENSAMXG00000011238	-	98	87.044	ENSRBIG00000038696	SMARCA4	93	87.248	Rhinopithecus_bieti
ENSAMXG00000011238	-	98	87.044	ENSRROG00000045509	SMARCA4	94	87.248	Rhinopithecus_roxellana
ENSAMXG00000011238	-	98	87.109	ENSSBOG00000026896	SMARCA4	94	87.313	Saimiri_boliviensis_boliviensis
ENSAMXG00000011238	-	98	86.364	ENSSHAG00000001642	SMARCA4	94	86.979	Sarcophilus_harrisii
ENSAMXG00000011238	-	96	89.151	ENSSFOG00015013823	smarca4	94	88.557	Scleropages_formosus
ENSAMXG00000011238	-	95	91.213	ENSSFOG00015009921	-	94	86.088	Scleropages_formosus
ENSAMXG00000011238	-	94	87.381	ENSSMAG00000003200	smarca4a	94	85.779	Scophthalmus_maximus
ENSAMXG00000011238	-	94	84.997	ENSSMAG00000014082	-	95	86.402	Scophthalmus_maximus
ENSAMXG00000011238	-	95	90.102	ENSSDUG00000005388	-	97	87.278	Seriola_dumerili
ENSAMXG00000011238	-	94	83.412	ENSSDUG00000017298	smarca4a	94	83.290	Seriola_dumerili
ENSAMXG00000011238	-	96	87.555	ENSSLDG00000024486	smarca4a	99	87.836	Seriola_lalandi_dorsalis
ENSAMXG00000011238	-	95	89.545	ENSSLDG00000023663	-	96	90.046	Seriola_lalandi_dorsalis
ENSAMXG00000011238	-	61	96.894	ENSSARG00000013477	SMARCA4	76	96.894	Sorex_araneus
ENSAMXG00000011238	-	98	83.355	ENSSPUG00000004558	SMARCA4	96	83.096	Sphenodon_punctatus
ENSAMXG00000011238	-	96	90.672	ENSSPAG00000012533	-	94	88.058	Stegastes_partitus
ENSAMXG00000011238	-	96	86.973	ENSSPAG00000004248	smarca4a	94	86.469	Stegastes_partitus
ENSAMXG00000011238	-	98	87.273	ENSSSCG00000013629	SMARCA4	94	87.289	Sus_scrofa
ENSAMXG00000011238	-	61	85.124	ENSTGUG00000015488	-	98	84.899	Taeniopygia_guttata
ENSAMXG00000011238	-	97	82.865	ENSTRUG00000004885	smarca4a	99	83.100	Takifugu_rubripes
ENSAMXG00000011238	-	98	84.738	ENSTRUG00000001378	SMARCA4	97	85.154	Takifugu_rubripes
ENSAMXG00000011238	-	99	85.358	ENSTNIG00000004536	SMARCA4	94	86.576	Tetraodon_nigroviridis
ENSAMXG00000011238	-	78	84.898	ENSTNIG00000004859	-	100	86.572	Tetraodon_nigroviridis
ENSAMXG00000011238	-	52	100.000	ENSTBEG00000000707	-	52	100.000	Tupaia_belangeri
ENSAMXG00000011238	-	98	84.439	ENSTTRG00000009519	SMARCA4	94	84.013	Tursiops_truncatus
ENSAMXG00000011238	-	98	87.174	ENSUAMG00000014661	SMARCA4	94	87.378	Ursus_americanus
ENSAMXG00000011238	-	100	84.643	ENSUMAG00000022005	SMARCA4	94	91.614	Ursus_maritimus
ENSAMXG00000011238	-	98	87.174	ENSVVUG00000017820	SMARCA4	91	87.378	Vulpes_vulpes
ENSAMXG00000011238	-	98	82.425	ENSXETG00000009355	smarca4	99	82.091	Xenopus_tropicalis
ENSAMXG00000011238	-	99	87.724	ENSXCOG00000013494	-	93	85.724	Xiphophorus_couchianus
ENSAMXG00000011238	-	96	84.911	ENSXMAG00000006321	smarca4a	99	85.046	Xiphophorus_maculatus
ENSAMXG00000011238	-	99	89.523	ENSXMAG00000007030	-	94	87.412	Xiphophorus_maculatus