EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000011570 (Gene tree)
Gene ID: 107196966
Gene Symbol: ptcd3
Alias: fa08d08|wu:fa08d08|zgc:123014
Full Name: pentatricopeptide repeat domain 3
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 16079 bases
Position: chr24:12446965-12463043
Accession: 107196966
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000011902	PPR	PF01535.20	8.6e-07	1	2
ENSAMXP00000011902	PPR	PF01535.20	8.6e-07	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000011902	-	2293	XM_022683576	ENSAMXP00000011902	661 (aa)	XP_022539297	W5KWE0

Gene Model

Click here to download ENSAMXG00000011570's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000011570's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000011570	ptcd3	90	59.672	ENSACIG00000022263	ptcd3	99	59.672	Amphilophus_citrinellus
ENSAMXG00000011570	ptcd3	99	57.489	ENSAOCG00000017186	ptcd3	97	57.489	Amphiprion_ocellaris
ENSAMXG00000011570	ptcd3	99	57.035	ENSAPEG00000016069	ptcd3	97	57.035	Amphiprion_percula
ENSAMXG00000011570	ptcd3	89	47.342	ENSAPLG00000005086	PTCD3	98	47.342	Anas_platyrhynchos
ENSAMXG00000011570	ptcd3	100	58.832	ENSACLG00000020653	ptcd3	100	58.832	Astatotilapia_calliptera
ENSAMXG00000011570	ptcd3	98	58.537	ENSCVAG00000020820	ptcd3	98	59.967	Cyprinodon_variegatus
ENSAMXG00000011570	ptcd3	85	54.561	ENSGAFG00000015291	ptcd3	93	54.674	Gambusia_affinis
ENSAMXG00000011570	ptcd3	100	58.982	ENSHBUG00000020056	ptcd3	100	58.982	Haplochromis_burtoni
ENSAMXG00000011570	ptcd3	99	56.692	ENSLBEG00000015349	ptcd3	99	56.692	Labrus_bergylta
ENSAMXG00000011570	ptcd3	100	59.132	ENSMZEG00005004980	ptcd3	100	59.132	Maylandia_zebra
ENSAMXG00000011570	ptcd3	91	47.240	ENSMGAG00000013124	PTCD3	99	47.209	Meleagris_gallopavo
ENSAMXG00000011570	ptcd3	100	56.737	ENSMALG00000013282	ptcd3	100	56.737	Monopterus_albus
ENSAMXG00000011570	ptcd3	90	57.647	ENSNBRG00000000447	ptcd3	100	57.647	Neolamprologus_brichardi
ENSAMXG00000011570	ptcd3	100	58.982	ENSONIG00000015886	ptcd3	100	58.982	Oreochromis_niloticus
ENSAMXG00000011570	ptcd3	100	56.372	ENSORLG00000008776	ptcd3	100	57.427	Oryzias_latipes
ENSAMXG00000011570	ptcd3	99	56.156	ENSORLG00020020676	ptcd3	99	56.757	Oryzias_latipes_hni
ENSAMXG00000011570	ptcd3	87	46.734	ENSORLG00015015978	ptcd3	99	46.734	Oryzias_latipes_hsok
ENSAMXG00000011570	ptcd3	98	56.836	ENSPFOG00000004442	ptcd3	100	56.836	Poecilia_formosa
ENSAMXG00000011570	ptcd3	90	56.000	ENSPLAG00000021401	ptcd3	99	56.000	Poecilia_latipinna
ENSAMXG00000011570	ptcd3	88	53.242	ENSPMEG00000007153	ptcd3	100	53.467	Poecilia_mexicana
ENSAMXG00000011570	ptcd3	99	54.706	ENSSFOG00015019643	ptcd3	97	56.796	Scleropages_formosus
ENSAMXG00000011570	ptcd3	80	52.416	ENSTGUG00000010760	PTCD3	100	52.416	Taeniopygia_guttata
ENSAMXG00000011570	ptcd3	95	56.625	ENSTRUG00000003939	ptcd3	96	56.625	Takifugu_rubripes