EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000011775 (Gene tree)
Gene ID: 103042690
Gene Symbol: tdp2b
Alias: tdp2|ttrap|ttrapl
Full Name: tyrosyl-DNA phosphodiesterase 2
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Minus strand
Length: 29345 bases
Position: chr23:19017276-19046620
Accession: 103042690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000012104	TAP_C	PF03943.13	8.7e-05	1	1
ENSAMXP00000012104	Exo_endo_phos	PF03372.23	3.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000012104	-	1727	XM_007249391	ENSAMXP00000012104	379 (aa)	XP_007249453	W5KWZ2

Gene Model

Click here to download ENSAMXG00000011775's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000011775's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000011775	tdp2b	70	48.507	ENSAMXG00000036549	tdp2a	87	48.507

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000011775	tdp2b	95	51.934	ENSG00000111802	TDP2	91	56.679	Homo_sapiens
ENSAMXG00000011775	tdp2b	66	60.079	ENSAPOG00000018379	-	89	60.079	Acanthochromis_polyacanthus
ENSAMXG00000011775	tdp2b	72	56.522	ENSAMEG00000010230	TDP2	98	56.522	Ailuropoda_melanoleuca
ENSAMXG00000011775	tdp2b	68	57.634	ENSAPEG00000004208	-	93	57.634	Amphiprion_percula
ENSAMXG00000011775	tdp2b	71	54.945	ENSATEG00000010663	-	88	54.945	Anabas_testudineus
ENSAMXG00000011775	tdp2b	95	50.685	ENSACAG00000002332	TDP2	93	51.064	Anolis_carolinensis
ENSAMXG00000011775	tdp2b	95	52.486	ENSANAG00000020033	TDP2	95	51.587	Aotus_nancymaae
ENSAMXG00000011775	tdp2b	71	65.185	ENSACLG00000016148	tdp2b	94	65.185	Astatotilapia_calliptera
ENSAMXG00000011775	tdp2b	74	59.859	ENSACLG00000016132	tdp2b	96	59.859	Astatotilapia_calliptera
ENSAMXG00000011775	tdp2b	74	60.211	ENSACLG00000016174	tdp2b	96	60.211	Astatotilapia_calliptera
ENSAMXG00000011775	tdp2b	96	52.291	ENSBTAG00000000365	TDP2	95	51.979	Bos_taurus
ENSAMXG00000011775	tdp2b	99	52.116	ENSCJAG00000006074	TDP2	92	58.214	Callithrix_jacchus
ENSAMXG00000011775	tdp2b	99	51.587	ENSCJAG00000021963	-	95	51.587	Callithrix_jacchus
ENSAMXG00000011775	tdp2b	99	50.524	ENSCAFG00000010428	TDP2	94	59.124	Canis_familiaris
ENSAMXG00000011775	tdp2b	72	59.124	ENSCAFG00020009994	TDP2	94	59.124	Canis_lupus_dingo
ENSAMXG00000011775	tdp2b	72	58.484	ENSCHIG00000015294	-	93	58.484	Capra_hircus
ENSAMXG00000011775	tdp2b	88	51.929	ENSTSYG00000037199	TDP2	99	51.929	Carlito_syrichta
ENSAMXG00000011775	tdp2b	95	52.762	ENSCPOG00000006390	TDP2	97	51.323	Cavia_porcellus
ENSAMXG00000011775	tdp2b	99	51.587	ENSCCAG00000022734	TDP2	92	57.143	Cebus_capucinus
ENSAMXG00000011775	tdp2b	95	52.210	ENSCATG00000022076	TDP2	92	56.786	Cercocebus_atys
ENSAMXG00000011775	tdp2b	99	51.571	ENSCLAG00000002072	TDP2	98	51.571	Chinchilla_lanigera
ENSAMXG00000011775	tdp2b	99	51.058	ENSCSAG00000007769	TDP2	96	51.058	Chlorocebus_sabaeus
ENSAMXG00000011775	tdp2b	97	50.943	ENSCPBG00000006551	TDP2	86	50.943	Chrysemys_picta_bellii
ENSAMXG00000011775	tdp2b	95	51.657	ENSCANG00000040122	TDP2	92	56.071	Colobus_angolensis_palliatus
ENSAMXG00000011775	tdp2b	96	47.397	ENSCGRG00001000384	Tdp2	93	46.543	Cricetulus_griseus_chok1gshd
ENSAMXG00000011775	tdp2b	96	46.301	ENSCGRG00000010250	Tdp2	95	46.053	Cricetulus_griseus_crigri
ENSAMXG00000011775	tdp2b	98	64.785	ENSCVAG00000003114	tdp2b	96	64.785	Cyprinodon_variegatus
ENSAMXG00000011775	tdp2b	99	68.490	ENSDARG00000035954	tdp2b	97	68.490	Danio_rerio
ENSAMXG00000011775	tdp2b	69	48.462	ENSDARG00000069941	tdp2a	58	48.462	Danio_rerio
ENSAMXG00000011775	tdp2b	99	49.471	ENSDNOG00000044082	TDP2	94	49.471	Dasypus_novemcinctus
ENSAMXG00000011775	tdp2b	72	56.934	ENSETEG00000019096	TDP2	99	56.934	Echinops_telfairi
ENSAMXG00000011775	tdp2b	94	35.351	ENSEBUG00000006535	tdp2a	96	35.351	Eptatretus_burgeri
ENSAMXG00000011775	tdp2b	95	52.066	ENSEASG00005007656	TDP2	95	51.459	Equus_asinus_asinus
ENSAMXG00000011775	tdp2b	95	52.762	ENSECAG00000014264	TDP2	95	52.128	Equus_caballus
ENSAMXG00000011775	tdp2b	95	53.482	ENSEEUG00000010776	TDP2	91	53.482	Erinaceus_europaeus
ENSAMXG00000011775	tdp2b	71	44.981	ENSELUG00000009321	tdp2a	84	44.981	Esox_lucius
ENSAMXG00000011775	tdp2b	97	65.803	ENSELUG00000016449	tdp2b	96	65.803	Esox_lucius
ENSAMXG00000011775	tdp2b	98	52.660	ENSFCAG00000025612	TDP2	95	52.660	Felis_catus
ENSAMXG00000011775	tdp2b	95	46.944	ENSFALG00000004710	TDP2	96	47.467	Ficedula_albicollis
ENSAMXG00000011775	tdp2b	72	61.314	ENSFDAG00000006512	TDP2	94	61.314	Fukomys_damarensis
ENSAMXG00000011775	tdp2b	66	54.941	ENSFHEG00000013560	-	86	54.941	Fundulus_heteroclitus
ENSAMXG00000011775	tdp2b	97	50.272	ENSGALG00000013637	TDP2	91	50.272	Gallus_gallus
ENSAMXG00000011775	tdp2b	97	50.943	ENSGAGG00000002853	TDP2	86	50.943	Gopherus_agassizii
ENSAMXG00000011775	tdp2b	95	52.210	ENSGGOG00000014237	TDP2	92	56.429	Gorilla_gorilla
ENSAMXG00000011775	tdp2b	99	65.079	ENSHBUG00000002714	tdp2b	98	65.079	Haplochromis_burtoni
ENSAMXG00000011775	tdp2b	56	65.258	ENSHBUG00000005421	-	87	65.258	Haplochromis_burtoni
ENSAMXG00000011775	tdp2b	98	51.206	ENSHGLG00000008655	TDP2	96	51.206	Heterocephalus_glaber_female
ENSAMXG00000011775	tdp2b	98	51.206	ENSHGLG00100019087	TDP2	96	51.206	Heterocephalus_glaber_male
ENSAMXG00000011775	tdp2b	99	75.989	ENSIPUG00000013691	tdp2b	98	75.989	Ictalurus_punctatus
ENSAMXG00000011775	tdp2b	97	47.826	ENSJJAG00000021685	Tdp2	96	47.826	Jaculus_jaculus
ENSAMXG00000011775	tdp2b	75	52.862	ENSKMAG00000015485	-	95	52.862	Kryptolebias_marmoratus
ENSAMXG00000011775	tdp2b	97	52.520	ENSLACG00000008852	TDP2	95	52.520	Latimeria_chalumnae
ENSAMXG00000011775	tdp2b	72	64.727	ENSLOCG00000005817	tdp2b	99	64.727	Lepisosteus_oculatus
ENSAMXG00000011775	tdp2b	95	52.603	ENSLAFG00000002567	TDP2	98	51.444	Loxodonta_africana
ENSAMXG00000011775	tdp2b	95	52.210	ENSMFAG00000045296	TDP2	92	56.786	Macaca_fascicularis
ENSAMXG00000011775	tdp2b	95	52.210	ENSMMUG00000009803	TDP2	96	51.323	Macaca_mulatta
ENSAMXG00000011775	tdp2b	95	52.210	ENSMNEG00000038003	TDP2	92	56.786	Macaca_nemestrina
ENSAMXG00000011775	tdp2b	95	52.210	ENSMLEG00000028883	TDP2	92	56.786	Mandrillus_leucophaeus
ENSAMXG00000011775	tdp2b	97	64.865	ENSMAMG00000013654	tdp2b	95	64.865	Mastacembelus_armatus
ENSAMXG00000011775	tdp2b	72	64.599	ENSMZEG00005004077	tdp2b	91	64.599	Maylandia_zebra
ENSAMXG00000011775	tdp2b	71	64.444	ENSMZEG00005004153	tdp2b	93	64.444	Maylandia_zebra
ENSAMXG00000011775	tdp2b	74	61.566	ENSMZEG00005004126	tdp2b	96	61.566	Maylandia_zebra
ENSAMXG00000011775	tdp2b	99	62.963	ENSMZEG00005003950	tdp2b	98	62.963	Maylandia_zebra
ENSAMXG00000011775	tdp2b	66	56.471	ENSMZEG00005003980	-	83	56.471	Maylandia_zebra
ENSAMXG00000011775	tdp2b	68	61.628	ENSMZEG00005004055	tdp2b	86	61.390	Maylandia_zebra
ENSAMXG00000011775	tdp2b	70	59.176	ENSMZEG00005004103	tdp2b	89	59.176	Maylandia_zebra
ENSAMXG00000011775	tdp2b	97	51.087	ENSMGAG00000008014	TDP2	91	51.087	Meleagris_gallopavo
ENSAMXG00000011775	tdp2b	96	46.301	ENSMAUG00000014451	Tdp2	93	45.479	Mesocricetus_auratus
ENSAMXG00000011775	tdp2b	98	51.596	ENSMICG00000000039	TDP2	93	58.909	Microcebus_murinus
ENSAMXG00000011775	tdp2b	96	47.043	ENSMOCG00000002823	Tdp2	93	46.214	Microtus_ochrogaster
ENSAMXG00000011775	tdp2b	88	53.116	ENSMODG00000011653	TDP2	95	53.116	Monodelphis_domestica
ENSAMXG00000011775	tdp2b	66	59.127	ENSMALG00000005368	-	85	59.127	Monopterus_albus
ENSAMXG00000011775	tdp2b	98	49.326	MGP_CAROLIEiJ_G0018354	Tdp2	92	49.326	Mus_caroli
ENSAMXG00000011775	tdp2b	98	47.568	ENSMUSG00000035958	Tdp2	92	48.518	Mus_musculus
ENSAMXG00000011775	tdp2b	98	47.185	MGP_PahariEiJ_G0019417	Tdp2	93	46.809	Mus_pahari
ENSAMXG00000011775	tdp2b	98	48.518	MGP_SPRETEiJ_G0019220	Tdp2	91	48.518	Mus_spretus
ENSAMXG00000011775	tdp2b	95	52.473	ENSMPUG00000004516	TDP2	96	52.520	Mustela_putorius_furo
ENSAMXG00000011775	tdp2b	95	48.209	ENSMLUG00000013506	TDP2	92	48.209	Myotis_lucifugus
ENSAMXG00000011775	tdp2b	98	45.767	ENSNGAG00000001375	Tdp2	93	45.767	Nannospalax_galili
ENSAMXG00000011775	tdp2b	99	51.058	ENSNLEG00000002447	TDP2	97	51.058	Nomascus_leucogenys
ENSAMXG00000011775	tdp2b	96	53.951	ENSOPRG00000016299	TDP2	95	53.951	Ochotona_princeps
ENSAMXG00000011775	tdp2b	72	58.182	ENSODEG00000014018	TDP2	93	58.182	Octodon_degus
ENSAMXG00000011775	tdp2b	98	53.989	ENSOCUG00000013773	TDP2	95	53.989	Oryctolagus_cuniculus
ENSAMXG00000011775	tdp2b	66	57.937	ENSORLG00000001661	-	92	57.937	Oryzias_latipes
ENSAMXG00000011775	tdp2b	72	54.417	ENSORLG00020004634	-	96	54.417	Oryzias_latipes_hni
ENSAMXG00000011775	tdp2b	69	47.191	ENSORLG00015008190	-	97	47.191	Oryzias_latipes_hsok
ENSAMXG00000011775	tdp2b	72	52.364	ENSOMEG00000015899	-	93	55.200	Oryzias_melastigma
ENSAMXG00000011775	tdp2b	95	52.617	ENSOGAG00000025303	TDP2	90	52.617	Otolemur_garnettii
ENSAMXG00000011775	tdp2b	95	51.934	ENSPPAG00000029023	TDP2	93	56.429	Pan_paniscus
ENSAMXG00000011775	tdp2b	98	52.128	ENSPPRG00000015398	TDP2	95	52.128	Panthera_pardus
ENSAMXG00000011775	tdp2b	72	57.664	ENSPTIG00000018574	TDP2	94	57.664	Panthera_tigris_altaica
ENSAMXG00000011775	tdp2b	95	51.934	ENSPTRG00000017778	TDP2	92	56.429	Pan_troglodytes
ENSAMXG00000011775	tdp2b	95	52.762	ENSPANG00000017590	TDP2	92	57.500	Papio_anubis
ENSAMXG00000011775	tdp2b	97	65.054	ENSPKIG00000006483	tdp2b	95	65.054	Paramormyrops_kingsleyae
ENSAMXG00000011775	tdp2b	72	55.636	ENSPSIG00000004948	TDP2	94	55.636	Pelodiscus_sinensis
ENSAMXG00000011775	tdp2b	96	48.767	ENSPEMG00000001788	Tdp2	93	47.872	Peromyscus_maniculatus_bairdii
ENSAMXG00000011775	tdp2b	66	42.222	ENSPMAG00000001570	tdp2b	97	42.593	Petromyzon_marinus
ENSAMXG00000011775	tdp2b	96	52.575	ENSPCIG00000007316	TDP2	90	51.989	Phascolarctos_cinereus
ENSAMXG00000011775	tdp2b	72	50.725	ENSPFOG00000017990	-	99	50.725	Poecilia_formosa
ENSAMXG00000011775	tdp2b	73	50.179	ENSPLAG00000019439	-	88	50.179	Poecilia_latipinna
ENSAMXG00000011775	tdp2b	73	50.000	ENSPMEG00000010824	-	93	50.000	Poecilia_mexicana
ENSAMXG00000011775	tdp2b	95	51.934	ENSPPYG00000016282	TDP2	88	51.058	Pongo_abelii
ENSAMXG00000011775	tdp2b	95	52.486	ENSPCOG00000021415	TDP2	96	57.664	Propithecus_coquereli
ENSAMXG00000011775	tdp2b	99	63.492	ENSPNYG00000011532	tdp2b	98	63.492	Pundamilia_nyererei
ENSAMXG00000011775	tdp2b	71	61.189	ENSPNYG00000011504	tdp2b	91	61.189	Pundamilia_nyererei
ENSAMXG00000011775	tdp2b	65	53.441	ENSPNAG00000022162	tdp2a	63	53.441	Pygocentrus_nattereri
ENSAMXG00000011775	tdp2b	97	47.326	ENSRNOG00000018246	Tdp2	94	47.105	Rattus_norvegicus
ENSAMXG00000011775	tdp2b	95	52.210	ENSRBIG00000037119	TDP2	94	55.052	Rhinopithecus_bieti
ENSAMXG00000011775	tdp2b	95	51.657	ENSRROG00000005025	TDP2	94	55.052	Rhinopithecus_roxellana
ENSAMXG00000011775	tdp2b	99	50.794	ENSSBOG00000028734	TDP2	92	56.786	Saimiri_boliviensis_boliviensis
ENSAMXG00000011775	tdp2b	97	53.117	ENSSHAG00000002506	TDP2	91	53.117	Sarcophilus_harrisii
ENSAMXG00000011775	tdp2b	65	54.839	ENSSFOG00015011322	-	77	54.839	Scleropages_formosus
ENSAMXG00000011775	tdp2b	72	56.727	ENSSARG00000013547	TDP2	99	56.727	Sorex_araneus
ENSAMXG00000011775	tdp2b	97	50.136	ENSSPUG00000008288	TDP2	95	50.136	Sphenodon_punctatus
ENSAMXG00000011775	tdp2b	95	53.994	ENSSSCG00000001092	TDP2	95	53.316	Sus_scrofa
ENSAMXG00000011775	tdp2b	69	55.172	ENSTGUG00000009035	TDP2	98	55.172	Taeniopygia_guttata
ENSAMXG00000011775	tdp2b	99	62.533	ENSTRUG00000014347	tdp2b	98	62.533	Takifugu_rubripes
ENSAMXG00000011775	tdp2b	68	57.143	ENSTRUG00000012218	-	90	57.143	Takifugu_rubripes
ENSAMXG00000011775	tdp2b	65	58.730	ENSTNIG00000010260	TDP2	95	58.730	Tetraodon_nigroviridis
ENSAMXG00000011775	tdp2b	99	61.316	ENSTNIG00000017792	tdp2b	98	61.316	Tetraodon_nigroviridis
ENSAMXG00000011775	tdp2b	95	53.039	ENSTTRG00000016376	TDP2	95	52.926	Tursiops_truncatus
ENSAMXG00000011775	tdp2b	98	47.480	ENSUAMG00000025939	TDP2	95	47.480	Ursus_americanus
ENSAMXG00000011775	tdp2b	72	56.159	ENSUMAG00000020111	TDP2	91	56.159	Ursus_maritimus
ENSAMXG00000011775	tdp2b	99	51.832	ENSXETG00000014826	tdp2	96	51.832	Xenopus_tropicalis
ENSAMXG00000011775	tdp2b	74	50.523	ENSXCOG00000010778	-	79	50.523	Xiphophorus_couchianus
ENSAMXG00000011775	tdp2b	76	50.000	ENSXMAG00000022252	-	83	50.000	Xiphophorus_maculatus