EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000011932 (Gene tree)
Gene ID: 103029514
Gene Symbol: srsf5b
Alias: sfrs5b|wu:fe15e05|zgc:113907|zgc:92278
Full Name: serine/arginine-rich splicing factor 5
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 8796 bases
Position: chr3:56230926-56239721
Accession: 103029514
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000012267	RRM_1	PF00076.22	2.8e-32	1	2
ENSAMXP00000012267	RRM_1	PF00076.22	2.8e-32	2	2
ENSAMXP00000038086	RRM_1	PF00076.22	2.8e-32	1	2
ENSAMXP00000038086	RRM_1	PF00076.22	2.8e-32	2	2
ENSAMXP00000052735	RRM_1	PF00076.22	7.8e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000043445	-	919	-	ENSAMXP00000052735	148 (aa)	-	-
ENSAMXT00000012267	-	1015	-	ENSAMXP00000012267	260 (aa)	-	W5KXF5
ENSAMXT00000046426	-	1525	XM_007232922	ENSAMXP00000038086	260 (aa)	XP_007232984	UPI0003CD65CD

Gene Model

Click here to download ENSAMXG00000011932's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03040	Spliceosome	KEGG
amex05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000011932's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000011932	srsf5b	84	70.543	ENSAMXG00000030476	srsf5a	67	71.351
ENSAMXG00000011932	srsf5b	94	40.392	ENSAMXG00000032281	srsf9	69	43.750
ENSAMXG00000011932	srsf5b	82	49.206	ENSAMXG00000035996	srsf1a	65	50.000
ENSAMXG00000011932	srsf5b	81	56.923	ENSAMXG00000042692	-	95	58.647
ENSAMXG00000011932	srsf5b	81	62.295	ENSAMXG00000034811	srsf4	68	68.116

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000011932	srsf5b	88	77.863	ENSG00000100650	SRSF5	98	80.000	Homo_sapiens
ENSAMXG00000011932	srsf5b	84	94.531	ENSAPOG00000008642	srsf5b	65	94.709	Acanthochromis_polyacanthus
ENSAMXG00000011932	srsf5b	84	80.000	ENSAMEG00000014574	SRSF5	67	82.703	Ailuropoda_melanoleuca
ENSAMXG00000011932	srsf5b	96	82.156	ENSACIG00000010742	srsf5b	100	77.326	Amphilophus_citrinellus
ENSAMXG00000011932	srsf5b	84	94.531	ENSAOCG00000005719	srsf5b	65	94.709	Amphiprion_ocellaris
ENSAMXG00000011932	srsf5b	84	94.531	ENSAPEG00000007830	srsf5b	65	94.709	Amphiprion_percula
ENSAMXG00000011932	srsf5b	84	94.531	ENSATEG00000019112	srsf5b	65	93.651	Anabas_testudineus
ENSAMXG00000011932	srsf5b	80	78.814	ENSAPLG00000014681	SRSF5	69	79.570	Anas_platyrhynchos
ENSAMXG00000011932	srsf5b	84	80.800	ENSACAG00000005143	SRSF5	93	66.538	Anolis_carolinensis
ENSAMXG00000011932	srsf5b	84	76.000	ENSANAG00000037529	-	95	77.600	Aotus_nancymaae
ENSAMXG00000011932	srsf5b	88	77.863	ENSANAG00000027977	-	92	79.389	Aotus_nancymaae
ENSAMXG00000011932	srsf5b	84	94.531	ENSACLG00000026424	srsf5b	65	94.180	Astatotilapia_calliptera
ENSAMXG00000011932	srsf5b	84	80.000	ENSBTAG00000011596	SRSF5	67	82.703	Bos_taurus
ENSAMXG00000011932	srsf5b	88	77.863	ENSCJAG00000014884	SRSF5	92	79.389	Callithrix_jacchus
ENSAMXG00000011932	srsf5b	84	80.000	ENSCAFG00000016589	SRSF5	67	82.703	Canis_familiaris
ENSAMXG00000011932	srsf5b	84	80.000	ENSCAFG00020005661	SRSF5	67	82.703	Canis_lupus_dingo
ENSAMXG00000011932	srsf5b	84	80.000	ENSCHIG00000016794	SRSF5	66	82.703	Capra_hircus
ENSAMXG00000011932	srsf5b	88	78.626	ENSTSYG00000007786	SRSF5	92	79.389	Carlito_syrichta
ENSAMXG00000011932	srsf5b	84	80.000	ENSCAPG00000008801	SRSF5	66	82.703	Cavia_aperea
ENSAMXG00000011932	srsf5b	84	80.000	ENSCPOG00000039926	SRSF5	66	82.703	Cavia_porcellus
ENSAMXG00000011932	srsf5b	88	77.863	ENSCCAG00000029002	SRSF5	92	79.389	Cebus_capucinus
ENSAMXG00000011932	srsf5b	88	77.863	ENSCATG00000045051	SRSF5	92	79.389	Cercocebus_atys
ENSAMXG00000011932	srsf5b	84	80.000	ENSCLAG00000004755	SRSF5	67	82.703	Chinchilla_lanigera
ENSAMXG00000011932	srsf5b	84	80.000	ENSCSAG00000013041	SRSF5	92	66.923	Chlorocebus_sabaeus
ENSAMXG00000011932	srsf5b	84	79.200	ENSCPBG00000021653	SRSF5	68	83.243	Chrysemys_picta_bellii
ENSAMXG00000011932	srsf5b	88	77.863	ENSCANG00000030560	SRSF5	92	79.389	Colobus_angolensis_palliatus
ENSAMXG00000011932	srsf5b	84	80.000	ENSCGRG00001015339	Srsf5	68	82.703	Cricetulus_griseus_chok1gshd
ENSAMXG00000011932	srsf5b	84	80.000	ENSCGRG00000009833	Srsf5	92	66.923	Cricetulus_griseus_crigri
ENSAMXG00000011932	srsf5b	84	92.308	ENSCSEG00000003801	srsf5b	66	92.147	Cynoglossus_semilaevis
ENSAMXG00000011932	srsf5b	84	93.750	ENSCVAG00000017240	srsf5b	58	94.180	Cyprinodon_variegatus
ENSAMXG00000011932	srsf5b	99	97.279	ENSDARG00000027734	srsf5b	90	99.194	Danio_rerio
ENSAMXG00000011932	srsf5b	84	82.400	ENSDNOG00000006160	SRSF5	94	65.530	Dasypus_novemcinctus
ENSAMXG00000011932	srsf5b	84	80.000	ENSDORG00000003989	Srsf5	68	82.703	Dipodomys_ordii
ENSAMXG00000011932	srsf5b	84	74.194	ENSETEG00000020396	SRSF5	68	79.459	Echinops_telfairi
ENSAMXG00000011932	srsf5b	84	62.400	ENSEBUG00000006229	srsf5b	69	65.591	Eptatretus_burgeri
ENSAMXG00000011932	srsf5b	84	80.000	ENSEASG00005016615	SRSF5	67	82.703	Equus_asinus_asinus
ENSAMXG00000011932	srsf5b	88	78.626	ENSECAG00000026873	SRSF5	92	79.389	Equus_caballus
ENSAMXG00000011932	srsf5b	100	82.840	ENSELUG00000019852	srsf5b	100	82.840	Esox_lucius
ENSAMXG00000011932	srsf5b	88	78.626	ENSFCAG00000008848	SRSF5	92	79.389	Felis_catus
ENSAMXG00000011932	srsf5b	84	77.419	ENSFALG00000004979	SRSF5	68	82.609	Ficedula_albicollis
ENSAMXG00000011932	srsf5b	84	80.000	ENSFDAG00000011562	SRSF5	94	65.909	Fukomys_damarensis
ENSAMXG00000011932	srsf5b	84	94.531	ENSFHEG00000009476	srsf5b	62	94.180	Fundulus_heteroclitus
ENSAMXG00000011932	srsf5b	84	90.441	ENSGMOG00000000595	srsf5b	99	79.646	Gadus_morhua
ENSAMXG00000011932	srsf5b	88	76.154	ENSGALG00000009421	SRSF5	92	77.692	Gallus_gallus
ENSAMXG00000011932	srsf5b	84	94.531	ENSGAFG00000002865	srsf5b	63	94.180	Gambusia_affinis
ENSAMXG00000011932	srsf5b	100	78.750	ENSGACG00000007834	srsf5b	100	81.875	Gasterosteus_aculeatus
ENSAMXG00000011932	srsf5b	84	79.200	ENSGAGG00000004447	SRSF5	68	83.243	Gopherus_agassizii
ENSAMXG00000011932	srsf5b	88	77.863	ENSGGOG00000016462	SRSF5	92	79.389	Gorilla_gorilla
ENSAMXG00000011932	srsf5b	84	94.531	ENSHBUG00000012462	srsf5b	100	88.406	Haplochromis_burtoni
ENSAMXG00000011932	srsf5b	84	79.200	ENSHGLG00000010147	SRSF5	67	82.162	Heterocephalus_glaber_female
ENSAMXG00000011932	srsf5b	50	80.000	ENSHGLG00100000095	-	62	61.364	Heterocephalus_glaber_male
ENSAMXG00000011932	srsf5b	84	79.200	ENSHGLG00100015328	SRSF5	67	82.162	Heterocephalus_glaber_male
ENSAMXG00000011932	srsf5b	84	82.576	ENSHCOG00000005592	srsf5b	66	85.492	Hippocampus_comes
ENSAMXG00000011932	srsf5b	84	80.000	ENSSTOG00000020672	SRSF5	67	82.703	Ictidomys_tridecemlineatus
ENSAMXG00000011932	srsf5b	84	80.000	ENSJJAG00000001688	Srsf5	67	82.703	Jaculus_jaculus
ENSAMXG00000011932	srsf5b	100	90.000	ENSKMAG00000020486	srsf5b	100	90.000	Kryptolebias_marmoratus
ENSAMXG00000011932	srsf5b	84	93.077	ENSLBEG00000013647	srsf5b	65	91.099	Labrus_bergylta
ENSAMXG00000011932	srsf5b	84	83.200	ENSLACG00000005874	SRSF5	90	73.541	Latimeria_chalumnae
ENSAMXG00000011932	srsf5b	84	84.615	ENSLOCG00000012438	srsf5b	70	86.842	Lepisosteus_oculatus
ENSAMXG00000011932	srsf5b	84	81.600	ENSLAFG00000005260	SRSF5	93	65.530	Loxodonta_africana
ENSAMXG00000011932	srsf5b	88	77.863	ENSMFAG00000002393	SRSF5	92	79.389	Macaca_fascicularis
ENSAMXG00000011932	srsf5b	88	77.863	ENSMNEG00000030872	SRSF5	92	79.389	Macaca_nemestrina
ENSAMXG00000011932	srsf5b	88	77.863	ENSMLEG00000030017	SRSF5	92	79.389	Mandrillus_leucophaeus
ENSAMXG00000011932	srsf5b	84	94.531	ENSMAMG00000002673	srsf5b	65	94.180	Mastacembelus_armatus
ENSAMXG00000011932	srsf5b	84	94.531	ENSMZEG00005003550	srsf5b	65	94.180	Maylandia_zebra
ENSAMXG00000011932	srsf5b	55	76.761	ENSMGAG00000011835	SRSF5	63	77.241	Meleagris_gallopavo
ENSAMXG00000011932	srsf5b	84	80.000	ENSMAUG00000009544	Srsf5	92	66.923	Mesocricetus_auratus
ENSAMXG00000011932	srsf5b	88	78.626	ENSMICG00000037432	-	92	79.389	Microcebus_murinus
ENSAMXG00000011932	srsf5b	84	82.400	ENSMOCG00000013134	Srsf5	92	66.923	Microtus_ochrogaster
ENSAMXG00000011932	srsf5b	99	77.124	ENSMMOG00000000137	srsf5b	91	80.392	Mola_mola
ENSAMXG00000011932	srsf5b	84	79.200	ENSMODG00000011362	SRSF5	68	83.243	Monodelphis_domestica
ENSAMXG00000011932	srsf5b	100	85.621	ENSMALG00000021875	srsf5b	100	87.582	Monopterus_albus
ENSAMXG00000011932	srsf5b	84	80.000	ENSMUSG00000021134	Srsf5	96	93.182	Mus_musculus
ENSAMXG00000011932	srsf5b	84	80.000	MGP_PahariEiJ_G0029659	Srsf5	92	66.923	Mus_pahari
ENSAMXG00000011932	srsf5b	84	80.000	ENSMPUG00000007458	SRSF5	67	82.703	Mustela_putorius_furo
ENSAMXG00000011932	srsf5b	84	80.000	ENSMLUG00000011939	SRSF5	91	65.385	Myotis_lucifugus
ENSAMXG00000011932	srsf5b	84	80.000	ENSNGAG00000010073	-	67	82.703	Nannospalax_galili
ENSAMXG00000011932	srsf5b	96	81.343	ENSNBRG00000001285	srsf5b	65	92.670	Neolamprologus_brichardi
ENSAMXG00000011932	srsf5b	88	77.863	ENSNLEG00000001615	SRSF5	92	79.389	Nomascus_leucogenys
ENSAMXG00000011932	srsf5b	84	80.000	ENSOPRG00000008286	SRSF5	91	66.154	Ochotona_princeps
ENSAMXG00000011932	srsf5b	84	80.000	ENSODEG00000013469	-	68	82.703	Octodon_degus
ENSAMXG00000011932	srsf5b	84	77.600	ENSODEG00000000700	-	69	80.541	Octodon_degus
ENSAMXG00000011932	srsf5b	84	94.531	ENSONIG00000005759	srsf5b	65	94.180	Oreochromis_niloticus
ENSAMXG00000011932	srsf5b	84	72.000	ENSOANG00000013336	SRSF5	68	78.378	Ornithorhynchus_anatinus
ENSAMXG00000011932	srsf5b	84	80.000	ENSOCUG00000009274	SRSF5	90	66.923	Oryctolagus_cuniculus
ENSAMXG00000011932	srsf5b	84	86.154	ENSORLG00000029854	srsf5b	59	88.482	Oryzias_latipes
ENSAMXG00000011932	srsf5b	84	88.462	ENSORLG00015001720	srsf5b	65	90.052	Oryzias_latipes_hsok
ENSAMXG00000011932	srsf5b	84	82.400	ENSOGAG00000015122	SRSF5	67	82.703	Otolemur_garnettii
ENSAMXG00000011932	srsf5b	88	77.863	ENSPPAG00000029921	SRSF5	92	79.389	Pan_paniscus
ENSAMXG00000011932	srsf5b	88	78.626	ENSPPRG00000012903	SRSF5	92	79.389	Panthera_pardus
ENSAMXG00000011932	srsf5b	88	78.626	ENSPTIG00000018589	SRSF5	92	79.389	Panthera_tigris_altaica
ENSAMXG00000011932	srsf5b	88	77.863	ENSPTRG00000006488	SRSF5	92	79.389	Pan_troglodytes
ENSAMXG00000011932	srsf5b	88	77.863	ENSPANG00000021091	SRSF5	92	79.389	Papio_anubis
ENSAMXG00000011932	srsf5b	84	79.200	ENSPSIG00000012522	SRSF5	94	64.773	Pelodiscus_sinensis
ENSAMXG00000011932	srsf5b	84	95.276	ENSPMGG00000021646	srsf5b	91	94.531	Periophthalmus_magnuspinnatus
ENSAMXG00000011932	srsf5b	84	80.000	ENSPEMG00000020173	Srsf5	68	82.703	Peromyscus_maniculatus_bairdii
ENSAMXG00000011932	srsf5b	98	52.045	ENSPMAG00000007790	srsf5b	91	54.412	Petromyzon_marinus
ENSAMXG00000011932	srsf5b	84	79.200	ENSPCIG00000011877	SRSF5	68	83.243	Phascolarctos_cinereus
ENSAMXG00000011932	srsf5b	84	94.531	ENSPFOG00000017700	srsf5b	63	94.709	Poecilia_formosa
ENSAMXG00000011932	srsf5b	84	93.798	ENSPLAG00000006480	srsf5b	63	94.211	Poecilia_latipinna
ENSAMXG00000011932	srsf5b	100	89.474	ENSPMEG00000012751	srsf5b	100	90.132	Poecilia_mexicana
ENSAMXG00000011932	srsf5b	84	94.531	ENSPREG00000010381	srsf5b	63	94.180	Poecilia_reticulata
ENSAMXG00000011932	srsf5b	84	80.000	ENSPPYG00000005945	SRSF5	92	66.923	Pongo_abelii
ENSAMXG00000011932	srsf5b	84	78.400	ENSPCAG00000004405	SRSF5	100	82.550	Procavia_capensis
ENSAMXG00000011932	srsf5b	88	78.626	ENSPCOG00000014442	SRSF5	92	79.389	Propithecus_coquereli
ENSAMXG00000011932	srsf5b	84	94.531	ENSPNYG00000002669	srsf5b	94	94.531	Pundamilia_nyererei
ENSAMXG00000011932	srsf5b	100	99.324	ENSPNAG00000011262	srsf5b	100	99.324	Pygocentrus_nattereri
ENSAMXG00000011932	srsf5b	84	80.000	ENSRNOG00000005513	Srsf5	68	82.703	Rattus_norvegicus
ENSAMXG00000011932	srsf5b	88	77.863	ENSRBIG00000013003	SRSF5	92	79.389	Rhinopithecus_bieti
ENSAMXG00000011932	srsf5b	88	77.863	ENSRROG00000043407	SRSF5	92	79.389	Rhinopithecus_roxellana
ENSAMXG00000011932	srsf5b	88	77.863	ENSSBOG00000030784	SRSF5	92	79.389	Saimiri_boliviensis_boliviensis
ENSAMXG00000011932	srsf5b	84	79.200	ENSSHAG00000002871	SRSF5	68	83.243	Sarcophilus_harrisii
ENSAMXG00000011932	srsf5b	84	82.979	ENSSMAG00000019728	srsf5b	84	76.296	Scophthalmus_maximus
ENSAMXG00000011932	srsf5b	84	94.531	ENSSDUG00000005766	srsf5b	66	94.180	Seriola_dumerili
ENSAMXG00000011932	srsf5b	100	86.842	ENSSLDG00000023255	srsf5b	100	90.132	Seriola_lalandi_dorsalis
ENSAMXG00000011932	srsf5b	70	73.077	ENSSARG00000001059	SRSF5	92	58.077	Sorex_araneus
ENSAMXG00000011932	srsf5b	88	78.102	ENSSPUG00000002464	SRSF5	93	75.000	Sphenodon_punctatus
ENSAMXG00000011932	srsf5b	84	94.531	ENSSPAG00000015325	srsf5b	65	94.180	Stegastes_partitus
ENSAMXG00000011932	srsf5b	84	80.000	ENSSSCG00000032583	SRSF5	67	82.703	Sus_scrofa
ENSAMXG00000011932	srsf5b	84	77.419	ENSTGUG00000011425	SRSF5	68	82.609	Taeniopygia_guttata
ENSAMXG00000011932	srsf5b	84	86.508	ENSTRUG00000017811	srsf5b	60	93.048	Takifugu_rubripes
ENSAMXG00000011932	srsf5b	84	84.127	ENSTNIG00000016411	srsf5b	87	75.188	Tetraodon_nigroviridis
ENSAMXG00000011932	srsf5b	84	82.400	ENSTBEG00000001972	SRSF5	66	80.541	Tupaia_belangeri
ENSAMXG00000011932	srsf5b	83	79.839	ENSTTRG00000003318	SRSF5	66	82.609	Tursiops_truncatus
ENSAMXG00000011932	srsf5b	84	80.000	ENSUAMG00000014184	SRSF5	67	82.703	Ursus_americanus
ENSAMXG00000011932	srsf5b	84	82.400	ENSUMAG00000009827	SRSF5	71	83.333	Ursus_maritimus
ENSAMXG00000011932	srsf5b	84	80.000	ENSVPAG00000006448	SRSF5	67	82.703	Vicugna_pacos
ENSAMXG00000011932	srsf5b	84	80.000	ENSVVUG00000003790	SRSF5	67	82.703	Vulpes_vulpes
ENSAMXG00000011932	srsf5b	84	80.645	ENSXETG00000002211	srsf5	92	67.843	Xenopus_tropicalis
ENSAMXG00000011932	srsf5b	84	93.798	ENSXCOG00000001570	srsf5b	99	71.821	Xiphophorus_couchianus
ENSAMXG00000011932	srsf5b	100	88.235	ENSXMAG00000026416	srsf5b	100	88.235	Xiphophorus_maculatus