EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSAMXG00000012062 (Gene tree)
Gene ID: 103038473
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 3640 bases
Position: chr25:17063557-17067196
Accession: 103038473
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000012402	RNA_pol_A_bac	PF01000.26	3e-30	1	1
ENSAMXP00000047576	RNA_pol_A_bac	PF01000.26	4.1e-27	1	1
ENSAMXP00000047576	RNA_pol_L	PF01193.24	2.8e-23	1	1
ENSAMXP00000012402	RNA_pol_L	PF01193.24	4.3e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000012402	-	1436	XM_007249462	ENSAMXP00000012402	348 (aa)	XP_007249524	W5KXU0
ENSAMXT00000047357	-	894	-	ENSAMXP00000047576	297 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000012062's gene model file

Pathways

Pathway ID	Pathway Name	Source
amex03020	RNA polymerase	KEGG
amex04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012062's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012062	polr1c	99	72.464	ENSG00000171453	POLR1C	100	79.839	Homo_sapiens
ENSAMXG00000012062	polr1c	99	81.766	ENSAPOG00000024356	polr1c	100	82.336	Acanthochromis_polyacanthus
ENSAMXG00000012062	polr1c	99	73.043	ENSAMEG00000012205	POLR1C	99	73.043	Ailuropoda_melanoleuca
ENSAMXG00000012062	polr1c	94	69.184	ENSACIG00000016268	polr1c	91	69.789	Amphilophus_citrinellus
ENSAMXG00000012062	polr1c	99	80.342	ENSAOCG00000011687	polr1c	97	80.912	Amphiprion_ocellaris
ENSAMXG00000012062	polr1c	99	81.197	ENSAPEG00000002433	polr1c	100	81.766	Amphiprion_percula
ENSAMXG00000012062	polr1c	99	83.095	ENSATEG00000005985	polr1c	99	83.095	Anabas_testudineus
ENSAMXG00000012062	polr1c	86	73.333	ENSAPLG00000002908	POLR1C	100	73.333	Anas_platyrhynchos
ENSAMXG00000012062	polr1c	89	74.026	ENSACAG00000009764	POLR1C	88	74.026	Anolis_carolinensis
ENSAMXG00000012062	polr1c	99	72.174	ENSANAG00000025805	POLR1C	99	72.174	Aotus_nancymaae
ENSAMXG00000012062	polr1c	56	30.808	ENSACLG00000004854	polr2c	80	30.808	Astatotilapia_calliptera
ENSAMXG00000012062	polr1c	100	83.502	ENSACLG00000006573	polr1c	100	83.502	Astatotilapia_calliptera
ENSAMXG00000012062	polr1c	99	73.623	ENSBTAG00000018969	POLR1C	99	73.623	Bos_taurus
ENSAMXG00000012062	polr1c	96	45.042	WBGene00019275	rpac-40	94	45.042	Caenorhabditis_elegans
ENSAMXG00000012062	polr1c	99	71.884	ENSCJAG00000005594	POLR1C	99	71.884	Callithrix_jacchus
ENSAMXG00000012062	polr1c	99	72.754	ENSCAFG00000001872	POLR1C	99	72.754	Canis_familiaris
ENSAMXG00000012062	polr1c	99	72.754	ENSCAFG00020012018	POLR1C	99	72.754	Canis_lupus_dingo
ENSAMXG00000012062	polr1c	60	30.806	ENSCAFG00020007660	POLR2C	60	30.806	Canis_lupus_dingo
ENSAMXG00000012062	polr1c	99	73.121	ENSCHIG00000004352	POLR1C	99	73.121	Capra_hircus
ENSAMXG00000012062	polr1c	99	72.754	ENSTSYG00000011921	POLR1C	99	72.754	Carlito_syrichta
ENSAMXG00000012062	polr1c	86	74.582	ENSCAPG00000015364	POLR1C	88	74.582	Cavia_aperea
ENSAMXG00000012062	polr1c	99	73.333	ENSCPOG00000038098	POLR1C	99	73.333	Cavia_porcellus
ENSAMXG00000012062	polr1c	99	72.464	ENSCCAG00000020169	POLR1C	99	72.464	Cebus_capucinus
ENSAMXG00000012062	polr1c	99	72.464	ENSCATG00000044045	POLR1C	99	72.464	Cercocebus_atys
ENSAMXG00000012062	polr1c	60	30.806	ENSCLAG00000013676	POLR2C	52	30.806	Chinchilla_lanigera
ENSAMXG00000012062	polr1c	99	73.913	ENSCLAG00000009266	POLR1C	99	73.913	Chinchilla_lanigera
ENSAMXG00000012062	polr1c	99	71.594	ENSCSAG00000011913	POLR1C	99	71.594	Chlorocebus_sabaeus
ENSAMXG00000012062	polr1c	61	68.396	ENSCHOG00000006601	POLR1C	100	68.396	Choloepus_hoffmanni
ENSAMXG00000012062	polr1c	98	78.006	ENSCPBG00000025203	POLR1C	99	78.006	Chrysemys_picta_bellii
ENSAMXG00000012062	polr1c	99	55.814	ENSCING00000003563	-	99	55.814	Ciona_intestinalis
ENSAMXG00000012062	polr1c	99	72.174	ENSCANG00000043167	POLR1C	99	72.174	Colobus_angolensis_palliatus
ENSAMXG00000012062	polr1c	99	72.464	ENSCGRG00001017533	Polr1c	99	72.464	Cricetulus_griseus_chok1gshd
ENSAMXG00000012062	polr1c	86	73.244	ENSCGRG00000013225	Polr1c	100	73.244	Cricetulus_griseus_crigri
ENSAMXG00000012062	polr1c	99	81.556	ENSCSEG00000018097	polr1c	100	81.556	Cynoglossus_semilaevis
ENSAMXG00000012062	polr1c	56	30.808	ENSCVAG00000017931	polr2c	76	30.808	Cyprinodon_variegatus
ENSAMXG00000012062	polr1c	61	83.491	ENSCVAG00000005684	polr1c	88	81.818	Cyprinodon_variegatus
ENSAMXG00000012062	polr1c	99	87.896	ENSDARG00000039400	polr1c	96	87.896	Danio_rerio
ENSAMXG00000012062	polr1c	99	71.884	ENSDNOG00000042693	POLR1C	99	71.884	Dasypus_novemcinctus
ENSAMXG00000012062	polr1c	99	73.043	ENSDORG00000000429	Polr1c	99	73.043	Dipodomys_ordii
ENSAMXG00000012062	polr1c	90	52.548	FBgn0031657	CG3756	93	52.548	Drosophila_melanogaster
ENSAMXG00000012062	polr1c	100	69.828	ENSETEG00000010807	POLR1C	100	69.828	Echinops_telfairi
ENSAMXG00000012062	polr1c	98	69.298	ENSEBUG00000013725	polr1c	98	69.298	Eptatretus_burgeri
ENSAMXG00000012062	polr1c	99	72.754	ENSEASG00005003338	POLR1C	99	72.754	Equus_asinus_asinus
ENSAMXG00000012062	polr1c	99	72.754	ENSECAG00000023516	POLR1C	99	72.203	Equus_caballus
ENSAMXG00000012062	polr1c	99	73.913	ENSEEUG00000005471	POLR1C	99	73.913	Erinaceus_europaeus
ENSAMXG00000012062	polr1c	100	84.175	ENSELUG00000013027	polr1c	100	84.438	Esox_lucius
ENSAMXG00000012062	polr1c	99	73.043	ENSFCAG00000009735	POLR1C	99	73.043	Felis_catus
ENSAMXG00000012062	polr1c	93	74.303	ENSFALG00000012111	POLR1C	100	74.303	Ficedula_albicollis
ENSAMXG00000012062	polr1c	99	73.043	ENSFDAG00000008428	POLR1C	99	73.043	Fukomys_damarensis
ENSAMXG00000012062	polr1c	100	81.818	ENSFHEG00000000262	polr1c	100	81.818	Fundulus_heteroclitus
ENSAMXG00000012062	polr1c	57	77.326	ENSFHEG00000013867	-	84	77.326	Fundulus_heteroclitus
ENSAMXG00000012062	polr1c	93	80.556	ENSGMOG00000013878	polr1c	100	80.556	Gadus_morhua
ENSAMXG00000012062	polr1c	99	73.913	ENSGALG00000010349	POLR1C	99	73.913	Gallus_gallus
ENSAMXG00000012062	polr1c	99	80.342	ENSGAFG00000010153	polr1c	100	80.627	Gambusia_affinis
ENSAMXG00000012062	polr1c	99	77.493	ENSGACG00000002453	polr1c	100	78.348	Gasterosteus_aculeatus
ENSAMXG00000012062	polr1c	98	77.713	ENSGAGG00000010640	POLR1C	99	77.713	Gopherus_agassizii
ENSAMXG00000012062	polr1c	99	72.464	ENSGGOG00000010903	POLR1C	99	72.464	Gorilla_gorilla
ENSAMXG00000012062	polr1c	99	76.657	ENSHBUG00000017816	polr1c	100	76.657	Haplochromis_burtoni
ENSAMXG00000012062	polr1c	56	30.808	ENSHBUG00000023040	polr2c	80	30.808	Haplochromis_burtoni
ENSAMXG00000012062	polr1c	99	72.464	ENSHGLG00000019441	POLR1C	100	71.538	Heterocephalus_glaber_female
ENSAMXG00000012062	polr1c	99	72.754	ENSHGLG00100005970	POLR1C	99	72.754	Heterocephalus_glaber_male
ENSAMXG00000012062	polr1c	98	77.391	ENSHCOG00000002179	polr1c	99	77.391	Hippocampus_comes
ENSAMXG00000012062	polr1c	99	89.080	ENSIPUG00000024464	polr1c	100	89.080	Ictalurus_punctatus
ENSAMXG00000012062	polr1c	60	30.806	ENSSTOG00000015150	-	50	30.806	Ictidomys_tridecemlineatus
ENSAMXG00000012062	polr1c	99	72.754	ENSSTOG00000010631	POLR1C	99	72.754	Ictidomys_tridecemlineatus
ENSAMXG00000012062	polr1c	99	73.043	ENSJJAG00000023110	Polr1c	99	73.043	Jaculus_jaculus
ENSAMXG00000012062	polr1c	100	79.461	ENSKMAG00000014305	polr1c	100	79.461	Kryptolebias_marmoratus
ENSAMXG00000012062	polr1c	99	82.621	ENSLBEG00000014925	polr1c	100	83.191	Labrus_bergylta
ENSAMXG00000012062	polr1c	94	58.308	ENSLACG00000012567	POLR1C	98	58.308	Latimeria_chalumnae
ENSAMXG00000012062	polr1c	99	81.556	ENSLOCG00000016710	polr1c	96	81.556	Lepisosteus_oculatus
ENSAMXG00000012062	polr1c	60	30.806	ENSLAFG00000027230	POLR2C	74	30.806	Loxodonta_africana
ENSAMXG00000012062	polr1c	86	72.757	ENSLAFG00000026248	POLR1C	100	72.757	Loxodonta_africana
ENSAMXG00000012062	polr1c	99	72.174	ENSMFAG00000046295	POLR1C	99	72.174	Macaca_fascicularis
ENSAMXG00000012062	polr1c	99	72.174	ENSMMUG00000015192	POLR1C	99	72.174	Macaca_mulatta
ENSAMXG00000012062	polr1c	99	72.174	ENSMNEG00000028073	POLR1C	99	72.174	Macaca_nemestrina
ENSAMXG00000012062	polr1c	99	72.174	ENSMLEG00000034818	POLR1C	99	72.174	Mandrillus_leucophaeus
ENSAMXG00000012062	polr1c	100	83.838	ENSMAMG00000008700	polr1c	100	83.838	Mastacembelus_armatus
ENSAMXG00000012062	polr1c	100	83.165	ENSMZEG00005018545	polr1c	100	83.165	Maylandia_zebra
ENSAMXG00000012062	polr1c	84	70.447	ENSMGAG00000011020	POLR1C	100	70.447	Meleagris_gallopavo
ENSAMXG00000012062	polr1c	99	72.174	ENSMAUG00000014329	Polr1c	99	72.174	Mesocricetus_auratus
ENSAMXG00000012062	polr1c	99	72.464	ENSMICG00000005027	POLR1C	99	72.964	Microcebus_murinus
ENSAMXG00000012062	polr1c	99	73.043	ENSMOCG00000017549	Polr1c	99	73.043	Microtus_ochrogaster
ENSAMXG00000012062	polr1c	100	79.125	ENSMMOG00000005380	polr1c	100	79.125	Mola_mola
ENSAMXG00000012062	polr1c	84	76.289	ENSMODG00000018964	POLR1C	100	76.289	Monodelphis_domestica
ENSAMXG00000012062	polr1c	100	84.512	ENSMALG00000011711	polr1c	100	84.512	Monopterus_albus
ENSAMXG00000012062	polr1c	99	63.768	MGP_CAROLIEiJ_G0021662	Polr1c	100	71.538	Mus_caroli
ENSAMXG00000012062	polr1c	99	72.754	ENSMUSG00000067148	Polr1c	98	75.248	Mus_musculus
ENSAMXG00000012062	polr1c	99	72.754	MGP_PahariEiJ_G0020654	Polr1c	98	76.238	Mus_pahari
ENSAMXG00000012062	polr1c	99	72.754	MGP_SPRETEiJ_G0022574	Polr1c	98	75.248	Mus_spretus
ENSAMXG00000012062	polr1c	99	73.333	ENSMPUG00000012916	POLR1C	91	73.333	Mustela_putorius_furo
ENSAMXG00000012062	polr1c	99	73.333	ENSMLUG00000017751	POLR1C	99	73.333	Myotis_lucifugus
ENSAMXG00000012062	polr1c	99	71.884	ENSNGAG00000023487	Polr1c	100	73.196	Nannospalax_galili
ENSAMXG00000012062	polr1c	100	82.828	ENSNBRG00000018742	polr1c	100	82.828	Neolamprologus_brichardi
ENSAMXG00000012062	polr1c	99	72.464	ENSNLEG00000004035	POLR1C	99	72.464	Nomascus_leucogenys
ENSAMXG00000012062	polr1c	51	30.387	ENSNLEG00000003034	POLR2C	65	30.387	Nomascus_leucogenys
ENSAMXG00000012062	polr1c	98	63.824	ENSMEUG00000006778	POLR1C	98	63.824	Notamacropus_eugenii
ENSAMXG00000012062	polr1c	77	73.783	ENSOPRG00000000145	POLR1C	99	73.783	Ochotona_princeps
ENSAMXG00000012062	polr1c	99	73.913	ENSODEG00000015831	-	99	73.913	Octodon_degus
ENSAMXG00000012062	polr1c	63	70.776	ENSODEG00000017109	-	100	70.776	Octodon_degus
ENSAMXG00000012062	polr1c	99	82.336	ENSONIG00000013133	polr1c	98	82.906	Oreochromis_niloticus
ENSAMXG00000012062	polr1c	99	71.304	ENSOANG00000003043	POLR1C	99	71.304	Ornithorhynchus_anatinus
ENSAMXG00000012062	polr1c	99	72.174	ENSOCUG00000005504	POLR1C	99	72.174	Oryctolagus_cuniculus
ENSAMXG00000012062	polr1c	99	77.586	ENSORLG00000019743	polr1c	99	77.586	Oryzias_latipes
ENSAMXG00000012062	polr1c	76	62.774	ENSORLG00020005555	polr1c	81	62.774	Oryzias_latipes_hni
ENSAMXG00000012062	polr1c	99	78.448	ENSORLG00020006489	POLR1C	99	78.448	Oryzias_latipes_hni
ENSAMXG00000012062	polr1c	99	77.874	ENSORLG00015013322	polr1c	99	77.874	Oryzias_latipes_hsok
ENSAMXG00000012062	polr1c	99	78.161	ENSOMEG00000016527	polr1c	99	78.161	Oryzias_melastigma
ENSAMXG00000012062	polr1c	99	73.199	ENSOGAG00000016318	POLR1C	99	73.199	Otolemur_garnettii
ENSAMXG00000012062	polr1c	99	73.333	ENSOARG00000007503	POLR1C	99	73.333	Ovis_aries
ENSAMXG00000012062	polr1c	99	72.464	ENSPPAG00000043678	POLR1C	99	72.464	Pan_paniscus
ENSAMXG00000012062	polr1c	99	73.043	ENSPPRG00000009760	POLR1C	99	73.043	Panthera_pardus
ENSAMXG00000012062	polr1c	99	73.043	ENSPTIG00000014813	POLR1C	99	73.043	Panthera_tigris_altaica
ENSAMXG00000012062	polr1c	99	72.464	ENSPTRG00000018202	POLR1C	99	72.464	Pan_troglodytes
ENSAMXG00000012062	polr1c	99	72.464	ENSPANG00000009025	POLR1C	99	72.464	Papio_anubis
ENSAMXG00000012062	polr1c	100	83.165	ENSPKIG00000009858	polr1c	100	83.573	Paramormyrops_kingsleyae
ENSAMXG00000012062	polr1c	98	77.941	ENSPSIG00000012580	POLR1C	93	77.941	Pelodiscus_sinensis
ENSAMXG00000012062	polr1c	59	30.435	ENSPMGG00000021249	polr2c	81	30.435	Periophthalmus_magnuspinnatus
ENSAMXG00000012062	polr1c	100	81.145	ENSPMGG00000012121	polr1c	100	81.145	Periophthalmus_magnuspinnatus
ENSAMXG00000012062	polr1c	99	72.754	ENSPEMG00000006970	Polr1c	99	72.754	Peromyscus_maniculatus_bairdii
ENSAMXG00000012062	polr1c	99	70.402	ENSPMAG00000005560	polr1c	99	70.402	Petromyzon_marinus
ENSAMXG00000012062	polr1c	60	31.019	ENSPMAG00000004827	polr2c	88	31.019	Petromyzon_marinus
ENSAMXG00000012062	polr1c	98	75.588	ENSPCIG00000028137	POLR1C	98	75.517	Phascolarctos_cinereus
ENSAMXG00000012062	polr1c	99	80.342	ENSPFOG00000014342	POLR1C	100	80.627	Poecilia_formosa
ENSAMXG00000012062	polr1c	99	80.342	ENSPFOG00000014357	polr1c	98	80.627	Poecilia_formosa
ENSAMXG00000012062	polr1c	61	82.547	ENSPLAG00000004111	polr1c	99	76.151	Poecilia_latipinna
ENSAMXG00000012062	polr1c	100	80.808	ENSPMEG00000011877	-	100	80.808	Poecilia_mexicana
ENSAMXG00000012062	polr1c	100	80.808	ENSPMEG00000008420	polr1c	100	80.808	Poecilia_mexicana
ENSAMXG00000012062	polr1c	99	81.556	ENSPREG00000007985	polr1c	100	81.556	Poecilia_reticulata
ENSAMXG00000012062	polr1c	99	72.174	ENSPPYG00000016645	POLR1C	99	72.174	Pongo_abelii
ENSAMXG00000012062	polr1c	99	73.043	ENSPCOG00000024628	POLR1C	99	73.043	Propithecus_coquereli
ENSAMXG00000012062	polr1c	99	66.377	ENSPVAG00000005689	POLR1C	99	66.377	Pteropus_vampyrus
ENSAMXG00000012062	polr1c	99	82.153	ENSPNYG00000003620	polr1c	100	82.621	Pundamilia_nyererei
ENSAMXG00000012062	polr1c	99	93.084	ENSPNAG00000008443	polr1c	100	93.084	Pygocentrus_nattereri
ENSAMXG00000012062	polr1c	99	72.174	ENSRNOG00000019079	Polr1c	99	72.174	Rattus_norvegicus
ENSAMXG00000012062	polr1c	99	72.464	ENSRBIG00000007155	POLR1C	99	72.464	Rhinopithecus_bieti
ENSAMXG00000012062	polr1c	99	72.464	ENSRROG00000000257	POLR1C	99	72.464	Rhinopithecus_roxellana
ENSAMXG00000012062	polr1c	90	50.158	YPR110C	RPC40	94	50.158	Saccharomyces_cerevisiae
ENSAMXG00000012062	polr1c	99	72.464	ENSSBOG00000025735	POLR1C	99	73.203	Saimiri_boliviensis_boliviensis
ENSAMXG00000012062	polr1c	98	68.824	ENSSHAG00000014456	POLR1C	98	68.824	Sarcophilus_harrisii
ENSAMXG00000012062	polr1c	99	85.879	ENSSFOG00015019860	polr1c	100	85.879	Scleropages_formosus
ENSAMXG00000012062	polr1c	99	83.285	ENSSMAG00000018865	polr1c	100	83.285	Scophthalmus_maximus
ENSAMXG00000012062	polr1c	100	83.838	ENSSDUG00000015745	polr1c	100	83.838	Seriola_dumerili
ENSAMXG00000012062	polr1c	100	83.502	ENSSLDG00000018285	polr1c	100	83.502	Seriola_lalandi_dorsalis
ENSAMXG00000012062	polr1c	98	71.848	ENSSPUG00000011822	POLR1C	99	71.848	Sphenodon_punctatus
ENSAMXG00000012062	polr1c	99	80.912	ENSSPAG00000022369	polr1c	100	81.481	Stegastes_partitus
ENSAMXG00000012062	polr1c	99	73.043	ENSSSCG00000028007	POLR1C	98	73.043	Sus_scrofa
ENSAMXG00000012062	polr1c	95	75.000	ENSTGUG00000009159	POLR1C	99	75.000	Taeniopygia_guttata
ENSAMXG00000012062	polr1c	100	77.852	ENSTRUG00000006264	polr1c	100	78.348	Takifugu_rubripes
ENSAMXG00000012062	polr1c	51	69.101	ENSTBEG00000002254	POLR1C	100	69.101	Tupaia_belangeri
ENSAMXG00000012062	polr1c	76	70.342	ENSTTRG00000006344	POLR1C	76	70.342	Tursiops_truncatus
ENSAMXG00000012062	polr1c	99	72.754	ENSUAMG00000025602	POLR1C	99	72.754	Ursus_americanus
ENSAMXG00000012062	polr1c	99	72.754	ENSUMAG00000005938	POLR1C	99	72.754	Ursus_maritimus
ENSAMXG00000012062	polr1c	99	72.203	ENSVVUG00000028922	POLR1C	99	72.203	Vulpes_vulpes
ENSAMXG00000012062	polr1c	99	69.253	ENSXETG00000010882	polr1c	100	69.253	Xenopus_tropicalis
ENSAMXG00000012062	polr1c	99	81.322	ENSXCOG00000014185	polr1c	100	81.322	Xiphophorus_couchianus
ENSAMXG00000012062	polr1c	99	80.627	ENSXMAG00000015076	polr1c	100	80.912	Xiphophorus_maculatus