EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSAMXG00000012270 (Gene tree)
Gene ID: 103034094
Gene Symbol: grsf1
Alias: wu:fb62c04|zgc:153305
Full Name: G-rich sequence factor 1
Gene Type: protein_coding
Species: Astyanax_mexicanus
Status: putative
Strand: Plus strand
Length: 18238 bases
Position: chrAPWO02000029.1:1567482-1585719
Accession: 103034094
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSAMXP00000054164	RRM_1	PF00076.22	2.8e-50	1	5
ENSAMXP00000054164	RRM_1	PF00076.22	2.8e-50	2	5
ENSAMXP00000054164	RRM_1	PF00076.22	2.8e-50	3	5
ENSAMXP00000054164	RRM_1	PF00076.22	2.8e-50	4	5
ENSAMXP00000054164	RRM_1	PF00076.22	2.8e-50	5	5
ENSAMXP00000036162	RRM_1	PF00076.22	1.4e-49	1	5
ENSAMXP00000036162	RRM_1	PF00076.22	1.4e-49	2	5
ENSAMXP00000036162	RRM_1	PF00076.22	1.4e-49	3	5
ENSAMXP00000036162	RRM_1	PF00076.22	1.4e-49	4	5
ENSAMXP00000036162	RRM_1	PF00076.22	1.4e-49	5	5
ENSAMXP00000034938	RRM_1	PF00076.22	8.4e-49	1	5
ENSAMXP00000034938	RRM_1	PF00076.22	8.4e-49	2	5
ENSAMXP00000034938	RRM_1	PF00076.22	8.4e-49	3	5
ENSAMXP00000034938	RRM_1	PF00076.22	8.4e-49	4	5
ENSAMXP00000034938	RRM_1	PF00076.22	8.4e-49	5	5
ENSAMXP00000012620	RRM_1	PF00076.22	4.6e-47	1	5
ENSAMXP00000012620	RRM_1	PF00076.22	4.6e-47	2	5
ENSAMXP00000012620	RRM_1	PF00076.22	4.6e-47	3	5
ENSAMXP00000012620	RRM_1	PF00076.22	4.6e-47	4	5
ENSAMXP00000012620	RRM_1	PF00076.22	4.6e-47	5	5
ENSAMXP00000044095	RRM_1	PF00076.22	6.7e-46	1	5
ENSAMXP00000044095	RRM_1	PF00076.22	6.7e-46	2	5
ENSAMXP00000044095	RRM_1	PF00076.22	6.7e-46	3	5
ENSAMXP00000044095	RRM_1	PF00076.22	6.7e-46	4	5
ENSAMXP00000044095	RRM_1	PF00076.22	6.7e-46	5	5
ENSAMXP00000050902	RRM_1	PF00076.22	2.4e-44	1	4
ENSAMXP00000050902	RRM_1	PF00076.22	2.4e-44	2	4
ENSAMXP00000050902	RRM_1	PF00076.22	2.4e-44	3	4
ENSAMXP00000050902	RRM_1	PF00076.22	2.4e-44	4	4
ENSAMXP00000052747	RRM_1	PF00076.22	2.1e-41	1	4
ENSAMXP00000052747	RRM_1	PF00076.22	2.1e-41	2	4
ENSAMXP00000052747	RRM_1	PF00076.22	2.1e-41	3	4
ENSAMXP00000052747	RRM_1	PF00076.22	2.1e-41	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSAMXT00000031861	-	2761	XM_022664861	ENSAMXP00000054164	635 (aa)	XP_022520582	UPI000BBDF554
ENSAMXT00000044816	-	2767	-	ENSAMXP00000044095	637 (aa)	-	-
ENSAMXT00000035455	-	2767	-	ENSAMXP00000034938	637 (aa)	-	-
ENSAMXT00000040653	-	1914	-	ENSAMXP00000036162	637 (aa)	-	-
ENSAMXT00000056672	-	1773	-	ENSAMXP00000050902	590 (aa)	-	-
ENSAMXT00000012620	-	1725	XM_022664862	ENSAMXP00000012620	574 (aa)	XP_022520583	W5KYF8
ENSAMXT00000040908	-	2570	-	ENSAMXP00000052747	500 (aa)	-	-

Gene Model

Click here to download ENSAMXG00000012270's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSAMXG00000012270's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSAMXG00000012270	grsf1	99	40.432	ENSAMXG00000002483	hnrnph1	87	40.303
ENSAMXG00000012270	grsf1	99	40.785	ENSAMXG00000030703	hnrnph1l	69	40.785
ENSAMXG00000012270	grsf1	99	51.852	ENSAMXG00000021323	hnrnph3	93	43.617

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSAMXG00000012270	grsf1	98	53.125	ENSAPOG00000012487	grsf1	85	53.125	Acanthochromis_polyacanthus
ENSAMXG00000012270	grsf1	98	51.780	ENSACIG00000005871	grsf1	86	53.094	Amphilophus_citrinellus
ENSAMXG00000012270	grsf1	98	51.242	ENSAOCG00000017462	-	86	51.242	Amphiprion_ocellaris
ENSAMXG00000012270	grsf1	99	51.875	ENSAPEG00000007240	-	99	51.875	Amphiprion_percula
ENSAMXG00000012270	grsf1	98	49.679	ENSATEG00000007185	grsf1	83	49.359	Anabas_testudineus
ENSAMXG00000012270	grsf1	99	50.610	ENSACLG00000003685	-	86	50.610	Astatotilapia_calliptera
ENSAMXG00000012270	grsf1	98	47.389	ENSCSEG00000019209	-	92	47.323	Cynoglossus_semilaevis
ENSAMXG00000012270	grsf1	98	50.000	ENSCVAG00000004476	grsf1	86	48.297	Cyprinodon_variegatus
ENSAMXG00000012270	grsf1	99	50.804	ENSDARG00000053021	grsf1	94	50.804	Danio_rerio
ENSAMXG00000012270	grsf1	96	39.873	ENSFHEG00000013358	-	88	39.319	Fundulus_heteroclitus
ENSAMXG00000012270	grsf1	99	54.605	ENSGMOG00000014047	grsf1	100	56.923	Gadus_morhua
ENSAMXG00000012270	grsf1	98	48.265	ENSGAFG00000004496	grsf1	81	48.265	Gambusia_affinis
ENSAMXG00000012270	grsf1	99	44.272	ENSGACG00000014447	grsf1	99	44.272	Gasterosteus_aculeatus
ENSAMXG00000012270	grsf1	99	50.926	ENSHBUG00000006284	grsf1	87	50.926	Haplochromis_burtoni
ENSAMXG00000012270	grsf1	99	45.110	ENSHCOG00000007715	-	85	45.110	Hippocampus_comes
ENSAMXG00000012270	grsf1	99	57.567	ENSIPUG00000010533	grsf1	99	57.567	Ictalurus_punctatus
ENSAMXG00000012270	grsf1	99	47.812	ENSKMAG00000004528	grsf1	99	47.812	Kryptolebias_marmoratus
ENSAMXG00000012270	grsf1	98	44.257	ENSLBEG00000018100	grsf1	93	45.517	Labrus_bergylta
ENSAMXG00000012270	grsf1	99	50.932	ENSMAMG00000002627	grsf1	99	50.932	Mastacembelus_armatus
ENSAMXG00000012270	grsf1	99	50.610	ENSMZEG00005020633	-	86	50.610	Maylandia_zebra
ENSAMXG00000012270	grsf1	98	52.542	ENSMMOG00000014231	grsf1	98	49.401	Mola_mola
ENSAMXG00000012270	grsf1	99	48.171	ENSMALG00000000251	grsf1	82	48.171	Monopterus_albus
ENSAMXG00000012270	grsf1	98	50.926	ENSNBRG00000017774	grsf1	83	50.926	Neolamprologus_brichardi
ENSAMXG00000012270	grsf1	98	52.160	ENSONIG00000014119	grsf1	100	46.328	Oreochromis_niloticus
ENSAMXG00000012270	grsf1	98	47.896	ENSORLG00000030211	grsf1	98	47.896	Oryzias_latipes
ENSAMXG00000012270	grsf1	98	48.571	ENSORLG00020014383	grsf1	98	48.571	Oryzias_latipes_hni
ENSAMXG00000012270	grsf1	98	46.926	ENSORLG00015006520	grsf1	98	47.896	Oryzias_latipes_hsok
ENSAMXG00000012270	grsf1	99	46.893	ENSOMEG00000009181	grsf1	94	47.458	Oryzias_melastigma
ENSAMXG00000012270	grsf1	99	47.321	ENSPKIG00000019432	grsf1	84	49.216	Paramormyrops_kingsleyae
ENSAMXG00000012270	grsf1	98	49.544	ENSPMGG00000013654	grsf1	95	49.544	Periophthalmus_magnuspinnatus
ENSAMXG00000012270	grsf1	98	45.231	ENSPFOG00000006122	grsf1	86	45.231	Poecilia_formosa
ENSAMXG00000012270	grsf1	98	45.794	ENSPLAG00000020977	grsf1	86	45.794	Poecilia_latipinna
ENSAMXG00000012270	grsf1	98	46.154	ENSPMEG00000012485	grsf1	86	46.154	Poecilia_mexicana
ENSAMXG00000012270	grsf1	98	46.440	ENSPREG00000013383	grsf1	85	46.440	Poecilia_reticulata
ENSAMXG00000012270	grsf1	99	51.863	ENSPNYG00000005379	grsf1	86	51.863	Pundamilia_nyererei
ENSAMXG00000012270	grsf1	99	70.833	ENSPNAG00000014912	grsf1	100	70.833	Pygocentrus_nattereri
ENSAMXG00000012270	grsf1	99	37.685	ENSSFOG00015014620	grsf1	95	39.157	Scleropages_formosus
ENSAMXG00000012270	grsf1	99	51.242	ENSSMAG00000014181	grsf1	70	51.582	Scophthalmus_maximus
ENSAMXG00000012270	grsf1	98	54.754	ENSSDUG00000009397	-	96	54.514	Seriola_dumerili
ENSAMXG00000012270	grsf1	98	53.974	ENSSLDG00000025494	grsf1	99	48.837	Seriola_lalandi_dorsalis
ENSAMXG00000012270	grsf1	99	46.108	ENSSPAG00000023296	grsf1	99	46.108	Stegastes_partitus
ENSAMXG00000012270	grsf1	98	50.325	ENSTRUG00000015354	grsf1	99	50.325	Takifugu_rubripes
ENSAMXG00000012270	grsf1	98	46.154	ENSTNIG00000015350	-	97	48.621	Tetraodon_nigroviridis
ENSAMXG00000012270	grsf1	99	46.729	ENSXMAG00000029710	grsf1	81	46.729	Xiphophorus_maculatus